Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012288.1

Orthogroup ID

OG0006279

Physical Location & Seq

Genomic Coordinates Reverse (-)

79 .. 783

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012288.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggagttcgagaagcgaaaagcggcgacgctgacgtcactgagatcggaggtgacggacaagtcgccgaagggcacggtggacactccgatcattcctctcctcgacgtcatcaacggccaccgcgactacttcaccaccagctcctgctccggccgaatctccatcctctctcagcccgctcgccgggtctccaagaagaaagcctccggcggcgggtggctttacatctctcacgacccggccgatcccgactccgtcctcgacctcgtcttctgctcctccgatcagaatgagcaggagctccaagacgaccaaaacgacgttgttttcagattcgagccactgattatcgccgtcgagtgcagggacgtggcggcggcgcaggttctggtgtcgaaagccatagcgtccgggttcagagagtccggcattacgagttcgaacaagcgtgtgattatcgcgattcgctgctcgatacgattggaggttccgctggggagtagtcgcgagattatggtgtcttgcgagtatttgaggttccttgtgggcgtggcgaacgagaaattcgaggctaaccggaagaggaccgaggcttttctggaggctctgcagagtggggagagcggaggagggtttgcggtggctcctgctggtggaaattacgagaatgccccttccggtacggttttccgatcattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0031590 GO:0031591 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_3 Kelch_4 Kelch_5 Kelch_6 Met_10 TYW3

Protein Analysis

234

Amino Acids

25.47

Weight (kDa)

5.83

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04670
fragaria_vesca	FvH4_3g02080 FvH4_3g02080 FvH4_3g02080 FvH4_3g02080 FvH4_3g02080 FvH4_3g02080
malus_domestica	MD10G1321300.v1.1
prunus_persica	Prupe.4G021000_v2.0.a1 Prupe.4G021000_v2.0.a1 Prupe.4G021000_v2.0.a1 Prupe.4G021000_v2.0.a1 Prupe.4G021000_v2.0.a1
pyrus_communis	pycom10g27200
rosa_chinensis	RchiOBHm_Chr5g0003171
rosa_laevigata	RLG00000031082
rosa_multiflora	Rmu_sc0012288.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072840
rosa_rugosa	Rorug04G0401000 Rorug04G0401100
rosa_samantha	Rh5AG025900 Rh5BG027100 Rh5CG028700 Rh5DG025500
rosa_wichuraiana	Rw0G010910 Rw5G002390 Rw5G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	34, 61
AatII	GACGTC	2 cut(s)	38, 111
Acc36I	ACCTGC	1 cut(s)	376
AccBSI	CCGCTC	2 cut(s)	182, 627
AccII	CGCG	3 cut(s)	126, 464, 510
AclWI	GGATC	1 cut(s)	242
AcoI	YGGCCR	3 cut(s)	118, 154, 243
AcsI	RAATTY	1 cut(s)	566
AcyI	GRCGYC	2 cut(s)	35, 108
AfaI	GTAC	1 cut(s)	685
AfiI	CCNNNNNNNGG	3 cut(s)	186, 216, 656
AjiI	CACGTC	1 cut(s)	373
AluBI	AGCT	2 cut(s)	144, 304
AluI	AGCT	2 cut(s)	144, 304
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	2 cut(s)	147, 391
AoxI	GGCC	3 cut(s)	118, 154, 243
ApeKI	GCWGC	1 cut(s)	471
ApoI	RAATTY	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	588
AsuC2I	CCSGG	3 cut(s)	188, 242, 415
AsuHPI	GGTGA	2 cut(s)	64, 127
AsuII	TTCGAA	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	588
BaeGI	GKGCMC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	2 cut(s)	133, 341
BcnI	CCSGG	3 cut(s)	188, 242, 415
BcoDI	GTCTC	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	611
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	5 cut(s)	24, 214, 378, 381, 472
BlsI	GCNGC	5 cut(s)	25, 215, 379, 382, 473
Bme1390I	CCNGG	3 cut(s)	188, 242, 415
Bme18I	GGWCC	1 cut(s)	588
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	588
BmiI	GGNNCC	3 cut(s)	492, 542, 648
BmrFI	CCNGG	3 cut(s)	188, 242, 415
BpiI	GAAGAC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	623
Bpu14I	TTCGAA	1 cut(s)	443
BpuMI	CCSGG	3 cut(s)	188, 242, 415
BsaHI	GRCGYC	2 cut(s)	35, 108
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	591
BsaWI	WCCGGW	2 cut(s)	579, 680
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 216, 656
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	186, 216, 656
BseMII	CTCAG	2 cut(s)	32, 188
BseRI	GAGGAG	3 cut(s)	92, 271, 645
BseSI	GKGCMC	1 cut(s)	77
BseX3I	CGGCCG	2 cut(s)	154, 243
BseXI	GCAGC	1 cut(s)	458
BseYI	CCCAGC	1 cut(s)	496
BsgI	GTGCAG	1 cut(s)	385
Bsh1236I	CGCG	3 cut(s)	126, 464, 510
Bsh1285I	CGRYCG	2 cut(s)	157, 246
BshFI	GGCC	3 cut(s)	120, 156, 245
BsiEI	CGRYCG	2 cut(s)	157, 246
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	8 cut(s)	153, 187, 210, 242, 414, 429, 580, 681
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	3 cut(s)	186, 216, 656
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	3 cut(s)	120, 156, 245
Bso31I	GGTCTC	1 cut(s)	196
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	77, 306
Bsp143I	GATC	5 cut(s)	44, 90, 247, 286, 695
Bsp68I	TCGCGA	2 cut(s)	464, 510
BspANI	GGCC	3 cut(s)	120, 156, 245
BspCNI	CTCAG	2 cut(s)	33, 187
BspFNI	CGCG	3 cut(s)	126, 464, 510
BspLI	GGNNCC	3 cut(s)	492, 542, 648
BspMAI	CTGCAG	1 cut(s)	615
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	1 cut(s)	242
BspT104I	TTCGAA	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	196
BsrBI	CCGCTC	2 cut(s)	182, 627
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	5 cut(s)	44, 90, 247, 286, 695
BssNI	GRCGYC	2 cut(s)	35, 108
Bst4CI	ACNGT	2 cut(s)	79, 688
Bst6I	CTCTTC	1 cut(s)	578
BstACI	GRCGYC	2 cut(s)	35, 108
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	180, 184
BstDEI	CTNAG	2 cut(s)	41, 174
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	3 cut(s)	126, 464, 510
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	5 cut(s)	47, 93, 250, 289, 698
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	5 cut(s)	44, 90, 247, 286, 695
BstMCI	CGRYCG	2 cut(s)	157, 246
BstSCI	CCNGG	3 cut(s)	186, 240, 413
BstSFI	CTRYAG	1 cut(s)	611
BstSLI	GKGCMC	1 cut(s)	77
BstUI	CGCG	3 cut(s)	126, 464, 510
BstV1I	GCAGC	1 cut(s)	458
BstV2I	GAAGAC	1 cut(s)	265
BstZI	CGGCCG	2 cut(s)	154, 243
BsuRI	GGCC	3 cut(s)	120, 156, 245
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	38, 344
BtuMI	TCGCGA	2 cut(s)	464, 510
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	2 cut(s)	180, 184
CaiI	CAGNNNCTG	2 cut(s)	147, 391
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	588
CseI	GACGC	2 cut(s)	37, 399
Csp6I	GTAC	1 cut(s)	684
CviQI	GTAC	1 cut(s)	684
DdeI	CTNAG	2 cut(s)	41, 174
DpnI	GATC	5 cut(s)	46, 92, 249, 288, 697
DpnII	GATC	5 cut(s)	44, 90, 247, 286, 695
DrdI	GACNNNNNNGTC	2 cut(s)	34, 61
DseDI	GACNNNNNNGTC	2 cut(s)	34, 61
EaeI	YGGCCR	3 cut(s)	118, 154, 243
EagI	CGGCCG	2 cut(s)	154, 243
Eam1104I	CTCTTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	578
Ecl136II	GAGCTC	1 cut(s)	304
EclXI	CGGCCG	2 cut(s)	154, 243
Eco24I	GRGCYC	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	588
Eco52I	CGGCCG	2 cut(s)	154, 243
Eco53kI	GAGCTC	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	306
FaiI	YATR	2 cut(s)	407, 518
FaqI	GGGAC	1 cut(s)	383
FauI	CCCGC	2 cut(s)	187, 209
Fnu4HI	GCNGC	5 cut(s)	24, 214, 378, 381, 472
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	5 cut(s)	24, 214, 378, 381, 472
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	5 cut(s)	24, 214, 378, 381, 472
GsaI	CCCAGC	1 cut(s)	500
GsuI	CTGGAG	1 cut(s)	623
HaeIII	GGCC	3 cut(s)	120, 156, 245
HapII	CCGG	8 cut(s)	153, 187, 210, 242, 414, 429, 580, 681
HgaI	GACGC	2 cut(s)	37, 399
HhaI	GCGC	1 cut(s)	385
Hin1I	GRCGYC	2 cut(s)	35, 108
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HinfI	GANTC	5 cut(s)	159, 254, 336, 425, 466
HpaII	CCGG	8 cut(s)	153, 187, 210, 242, 414, 429, 580, 681
HphI	GGTGA	2 cut(s)	64, 127
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	8 cut(s)	49, 90, 286, 291, 335, 422, 695, 704
Hpy188III	TCNNGA	6 cut(s)	10, 236, 251, 463, 509, 602
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	4 cut(s)	31, 110, 326, 362
HpyAV	CCTTC	2 cut(s)	64, 687
HpyCH4III	ACNGT	2 cut(s)	79, 688
HpyCH4IV	ACGT	4 cut(s)	35, 108, 324, 372
HpyCH4V	TGCA	2 cut(s)	366, 613
HpyF3I	CTNAG	2 cut(s)	41, 174
HpySE526I	ACGT	4 cut(s)	35, 108, 324, 372
Hsp92I	GRCGYC	2 cut(s)	35, 108
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	5 cut(s)	44, 90, 247, 286, 695
LmnI	GCTCC	6 cut(s)	149, 155, 284, 301, 309, 652
Lsp1109I	GCAGC	1 cut(s)	458
MaeII	ACGT	4 cut(s)	35, 108, 324, 372
MaeIII	GTNAC	2 cut(s)	36, 52
MalI	GATC	5 cut(s)	46, 92, 249, 288, 697
MbiI	CCGCTC	2 cut(s)	182, 627
MboI	GATC	5 cut(s)	44, 90, 247, 286, 695
MboII	GAAGA	3 cut(s)	211, 265, 595
MhlI	GDGCHC	2 cut(s)	77, 306
MluCI	AATT	2 cut(s)	566, 661
MlyI	GAGTC	2 cut(s)	248, 434
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	8 cut(s)	153, 187, 210, 242, 414, 429, 580, 681
MspR9I	CCNGG	3 cut(s)	188, 242, 415
Mva1269I	GAATGC	1 cut(s)	676
MvnI	CGCG	3 cut(s)	126, 464, 510
NciI	CCSGG	3 cut(s)	188, 242, 415
NdeII	GATC	5 cut(s)	44, 90, 247, 286, 695
NlaIV	GGNNCC	3 cut(s)	492, 542, 648
NmuCI	GTSAC	2 cut(s)	36, 52
NruI	TCGCGA	2 cut(s)	464, 510
NspV	TTCGAA	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	4 cut(s)	123, 243, 318, 567
PctI	GAATGC	1 cut(s)	676
PfeI	GAWTC	3 cut(s)	159, 336, 466
PflFI	GACNNNGTC	2 cut(s)	257, 269
PkrI	GCNGC	5 cut(s)	25, 215, 379, 382, 473
PleI	GAGTC	2 cut(s)	248, 433
PpsI	GAGTC	2 cut(s)	248, 433
Psp124BI	GAGCTC	1 cut(s)	306
PspFI	CCCAGC	1 cut(s)	496
PspN4I	GGNNCC	3 cut(s)	492, 542, 648
PspPI	GGNCC	1 cut(s)	588
PsrI	GAACNNNNNNTAC	2 cut(s)	524, 556
PstI	CTGCAG	1 cut(s)	615
PstNI	CAGNNNCTG	2 cut(s)	147, 391
PsyI	GACNNNGTC	2 cut(s)	257, 269
RruI	TCGCGA	2 cut(s)	464, 510
RsaI	GTAC	1 cut(s)	685
RsaNI	GTAC	1 cut(s)	684
SacI	GAGCTC	1 cut(s)	306
SatI	GCNGC	5 cut(s)	24, 214, 378, 381, 472
Sau3AI	GATC	5 cut(s)	44, 90, 247, 286, 695
Sau96I	GGNCC	1 cut(s)	588
SchI	GAGTC	2 cut(s)	248, 434
ScrFI	CCNGG	3 cut(s)	188, 242, 415
SduI	GDGCHC	2 cut(s)	77, 306
SfcI	CTRYAG	1 cut(s)	611
SfuI	TTCGAA	1 cut(s)	443
SinI	GGWCC	1 cut(s)	588
Sse9I	AATT	2 cut(s)	566, 661
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	3 cut(s)	186, 240, 413
TaaI	ACNGT	2 cut(s)	79, 688
TaiI	ACGT	4 cut(s)	38, 111, 327, 375
TaqI	TCGA	9 cut(s)	9, 105, 264, 339, 360, 398, 443, 476, 570
TaqII	GACCGA	1 cut(s)	605
TasI	AATT	2 cut(s)	566, 661
TauI	GCSGC	4 cut(s)	26, 216, 380, 383
TfiI	GAWTC	3 cut(s)	159, 336, 466
TscAI	CASTG	2 cut(s)	45, 351
TseFI	GTSAC	2 cut(s)	36, 52
TseI	GCWGC	1 cut(s)	471
Tsp45I	GTSAC	2 cut(s)	36, 52
TspGWI	ACGGA	2 cut(s)	71, 247
TspRI	CASTG	2 cut(s)	45, 351
Tth111I	GACNNNGTC	2 cut(s)	257, 269
VpaK11BI	GGWCC	1 cut(s)	588
XapI	RAATTY	1 cut(s)	566
ZraI	GACGTC	2 cut(s)	36, 109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.