Rw5G002400

tRNA wybutosine-synthesizing protein 2 3

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
2109316 .. 2114241
4926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G002400.1

Sequence Viewer

Length: 1347 bp
ATGCACTCGTTGACGACTTATATCTCTAAACTCTCAATTCTATCACAAGTATCAAGTTTTGAAAAGAAGCTTTCTGATTGGCTCCATTTACAAACAGAGCCATATGAACCAATAGAACAACGACATCCCGTTCTCCCGTCTGATGCGCGACGCGTGCCCCAAAAAGGGCCAACTTTTTATGCCTCTAGGGTTCCCCTCGATAAAAATCTTCCTCGTCCGGCGGCGCACCCGTGTCGGCGTGGGCCTCTGGTCTCGTCGGCGTTTGGCGCGTGCAGCCGGACGGGCACTTTCCTCCTCGGAATTCTCAGATTTCTGGCAACTTTGGCAGGTTTCAATCTCAAGCGTGGTCTAGGAGAGATGGAAGGGAGGTGGATGTCAGGGTGGGTAGATCGATTTCGATCTGACCTTCTATGGTCGTGGGCGATCGTAGGTGCAGAGTGGCACTGGAGTGGGGTTGATCGGCGGCGGGATTGGGGTTCTCCTATCAGTGGTGATTCCAAAAGGGATATGCTGCTCTTTTGGGTTCGATCACTGATTGGGCGGAGGTCTATGAAGAAATGCGAAGTACGTTGTGCTTGTGTGCTTCCAGTGACATCATTCAAGAATCCGTTATGGGACTCAATTGCTGAGGAGCTTTGGCCCGCTGTTGCCAAATCAGTAAATGCTGTTCGCCTTGCTCGCCAAGGCCGAGTTGCATCAACTGGTACAAGGGACAGTACTTTGGAGATTCTTATAGGAGATAATGGTTGGGTTGATCATCGTGAAAATGGAATTCTCTATTCTTTTGATGCTACTAAGTGCATGTTCTCCTGGGGCAACCTTTCTGAGAAGCTCCGCATGGGCTCTCTAGATTGTAGAGATGAGATCATTGTGGATTTATTTGCTGGAATTGGATATTTTGTGCTGCCATTTCTTGTCAGGGCCAAGGCAAAACTAGTTTATGCTTGTGAATGGAATCCTCATGCTGTTGCGGCACTCCGGAGAAACGTACTAGCCAATTCTGTCAGTGATCGATGCATCATTCTTGAAGGAGATAACCGGACAACGGCACCTACAGGAGTGGCTGATCGGGTCTGCCTTGGTCTCATTCCATCAAGTGAATCAAGCTGGGCCACTGCTGTTAGGGCATTAAGGGGTGAGGGTGGGATGCTACATGTGCATGGGAATGTGGTGGACTCAGAGGAGAATTCATGGACCAAGCACGTAACAGAATCAATAGCTGAAACTGCTAGATCTCAAGGTCATTGTTGGGAGGTTTCAATAGAACATTTGGAGAGAGTGAAATGGTACGCCCCACACATCCGCCACGTTGTTGCAGATGTAAGATGTAGACAGACCCAGAAATAA

Protein Analysis

448

Amino Acids

50.42

Weight (kDa)

9.21

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRM5-TYW2_MTfase PF02475 253 - 407 1.2e-31 TRM5/TYW2 methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 1048
AccI GTMKAC 1 cut(s) 1330
AccII CGCG 3 cut(s) 148, 153, 269
AccIII TCCGGA 1 cut(s) 978
AciI CCGC 8 cut(s) 221, 463, 466, 541, 642, 835, 971, 1303
AcsI RAATTY 3 cut(s) 300, 771, 1186
AfaI GTAC 5 cut(s) 567, 706, 718, 990, 1289
AfiI CCNNNNNNNGG 4 cut(s) 164, 165, 488, 1045
AflIII ACRYGT 2 cut(s) 151, 1153
AgsI TTSAA 5 cut(s) 62, 334, 601, 1028, 1260
AhlI ACTAGT 1 cut(s) 934
AjnI CCWGG 1 cut(s) 809
AleI CACNNNNGTG 1 cut(s) 447
AluBI AGCT 5 cut(s) 70, 634, 832, 1107, 1220
AluI AGCT 5 cut(s) 70, 634, 832, 1107, 1220
Alw26I GTCTC 2 cut(s) 256, 1088
Aor13HI TCCGGA 1 cut(s) 978
AoxI GGCC 6 cut(s) 167, 242, 638, 685, 921, 1110
ApeKI GCWGC 3 cut(s) 273, 511, 904
ApoI RAATTY 3 cut(s) 300, 771, 1186
AspLEI GCGC 3 cut(s) 148, 226, 269
AspS9I GGNCC 6 cut(s) 167, 242, 639, 921, 1110, 1194
AsuHPI GGTGA 2 cut(s) 503, 1148
AvaII GGWCC 1 cut(s) 1194
BaeGI GKGCMC 2 cut(s) 159, 287
BanI GGYRCC 1 cut(s) 1048
BanII GRGCYC 1 cut(s) 845
BbvCI CCTCAGC 1 cut(s) 627
BbvI GCAGC 3 cut(s) 285, 498, 891
BccI CCATC 2 cut(s) 352, 1099
BceAI ACGGC 1 cut(s) 1062
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 811
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 2 cut(s) 256, 1088
BcuI ACTAGT 1 cut(s) 934
BfaI CTAG 6 cut(s) 186, 350, 848, 935, 992, 1230
BfmI CTRYAG 1 cut(s) 1053
BfuAI ACCTGC 1 cut(s) 317
BglI GCCNNNNNGGC 1 cut(s) 282
BglII AGATCT 1 cut(s) 1232
BisI GCNGC 6 cut(s) 222, 274, 464, 512, 905, 972
BlsI GCNGC 6 cut(s) 223, 275, 465, 513, 906, 973
BmcAI AGTACT 1 cut(s) 718
Bme1390I CCNGG 1 cut(s) 811
Bme18I GGWCC 1 cut(s) 1194
BmgT120I GGNCC 6 cut(s) 167, 242, 639, 921, 1110, 1194
BmiI GGNNCC 3 cut(s) 83, 192, 1050
BmrFI CCNGG 1 cut(s) 811
BmsI GCATC 6 cut(s) 133, 704, 778, 1004, 1026, 1137
BpmI CTGGAG 1 cut(s) 466
Bpu10I CCTNAGC 1 cut(s) 627
BpuEI CTTGAG 2 cut(s) 323, 1221
Bsa29I ATCGAT 2 cut(s) 391, 1012
BsaAI YACGTR 1 cut(s) 1204
BsaBI GATNNNNATC 2 cut(s) 204, 397
BsaI GGTCTC 2 cut(s) 256, 1088
BsaJI CCNNGG 5 cut(s) 295, 682, 810, 924, 1078
BsaWI WCCGGW 2 cut(s) 978, 1038
Bsc4I CCNNNNNNNGG 4 cut(s) 164, 165, 488, 1045
Bse1I ACTGG 3 cut(s) 449, 587, 706
Bse8I GATNNNNATC 2 cut(s) 204, 397
BseAI TCCGGA 1 cut(s) 978
BseBI CCWGG 1 cut(s) 811
BseCI ATCGAT 2 cut(s) 391, 1012
BseDI CCNNGG 5 cut(s) 295, 682, 810, 924, 1078
BseGI GGATG 4 cut(s) 124, 378, 1152, 1299
BseJI GATNNNNATC 2 cut(s) 204, 397
BseLI CCNNNNNNNGG 4 cut(s) 164, 165, 488, 1045
BseMII CTCAG 4 cut(s) 319, 618, 816, 1191
BseNI ACTGG 3 cut(s) 449, 587, 706
BseRI GAGGAG 3 cut(s) 284, 644, 1196
BseSI GKGCMC 2 cut(s) 159, 287
BseXI GCAGC 3 cut(s) 285, 498, 891
BseYI CCCAGC 1 cut(s) 1107
BsgI GTGCAG 2 cut(s) 292, 453
Bsh1236I CGCG 3 cut(s) 148, 153, 269
Bsh1285I CGRYCG 1 cut(s) 426
BshFI GGCC 6 cut(s) 169, 244, 640, 687, 923, 1112
BshNI GGYRCC 1 cut(s) 1048
BshVI ATCGAT 2 cut(s) 391, 1012
BsiEI CGRYCG 1 cut(s) 426
BsiSI CCGG 4 cut(s) 218, 277, 979, 1039
BslFI GGGAC 2 cut(s) 629, 725
BslI CCNNNNNNNGG 4 cut(s) 164, 165, 488, 1045
BsmAI GTCTC 2 cut(s) 256, 1088
BsmFI GGGAC 2 cut(s) 629, 725
BsnI GGCC 6 cut(s) 169, 244, 640, 687, 923, 1112
Bso31I GGTCTC 2 cut(s) 256, 1088
Bsp1286I GDGCHC 3 cut(s) 159, 287, 845
Bsp13I TCCGGA 1 cut(s) 978
BspACI CCGC 8 cut(s) 221, 463, 466, 541, 642, 835, 971, 1303
BspANI GGCC 6 cut(s) 169, 244, 640, 687, 923, 1112
BspCNI CTCAG 4 cut(s) 318, 619, 817, 1190
BspDI ATCGAT 2 cut(s) 391, 1012
BspEI TCCGGA 1 cut(s) 978
BspFNI CGCG 3 cut(s) 148, 153, 269
BspLI GGNNCC 3 cut(s) 83, 192, 1050
BspMI ACCTGC 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 1048
BspTNI GGTCTC 2 cut(s) 256, 1088
BsrI ACTGG 3 cut(s) 449, 587, 706
BssECI CCNNGG 5 cut(s) 295, 682, 810, 924, 1078
BssT1I CCWWGG 3 cut(s) 682, 924, 1078
Bst2UI CCWGG 1 cut(s) 811
Bst4CI ACNGT 1 cut(s) 716
BstBAI YACGTR 1 cut(s) 1204
BstC8I GCNNGC 4 cut(s) 155, 271, 642, 679
BstDEI CTNAG 5 cut(s) 305, 627, 795, 825, 1177
BstF5I GGATG 4 cut(s) 124, 378, 1152, 1299
BstFNI CGCG 3 cut(s) 148, 153, 269
BstHHI GCGC 3 cut(s) 148, 226, 269
BstMAI GTCTC 2 cut(s) 256, 1088
BstMCI CGRYCG 1 cut(s) 426
BstNI CCWGG 1 cut(s) 811
BstNSI RCATGY 2 cut(s) 805, 1157
BstSCI CCNGG 1 cut(s) 809
BstSFI CTRYAG 1 cut(s) 1053
BstSLI GKGCMC 2 cut(s) 159, 287
BstUI CGCG 3 cut(s) 148, 153, 269
BstV1I GCAGC 3 cut(s) 285, 498, 891
BstX2I RGATCY 1 cut(s) 1232
BstYI RGATCY 1 cut(s) 1232
Bsu15I ATCGAT 2 cut(s) 391, 1012
BsuRI GGCC 6 cut(s) 169, 244, 640, 687, 923, 1112
BsuTUI ATCGAT 2 cut(s) 391, 1012
BtsCI GGATG 4 cut(s) 124, 378, 1152, 1299
BtsI GCAGTG 1 cut(s) 1113
BtsIMutI CAGTG 6 cut(s) 442, 493, 530, 594, 1012, 1113
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 4 cut(s) 155, 271, 642, 679
CfoI GCGC 3 cut(s) 148, 226, 269
Cfr13I GGNCC 6 cut(s) 167, 242, 639, 921, 1110, 1194
ClaI ATCGAT 2 cut(s) 391, 1012
CseI GACGC 1 cut(s) 159
Csp6I GTAC 5 cut(s) 566, 705, 717, 989, 1288
CviAII CATG 6 cut(s) 802, 838, 962, 1154, 1160, 1191
CviQI GTAC 5 cut(s) 566, 705, 717, 989, 1288
DdeI CTNAG 5 cut(s) 305, 627, 795, 825, 1177
EciI GGCGGA 2 cut(s) 556, 1292
Eco130I CCWWGG 3 cut(s) 682, 924, 1078
Eco24I GRGCYC 1 cut(s) 845
Eco31I GGTCTC 2 cut(s) 256, 1088
Eco47I GGWCC 1 cut(s) 1194
EcoRI GAATTC 3 cut(s) 300, 771, 1186
EcoRII CCWGG 1 cut(s) 809
EcoT14I CCWWGG 3 cut(s) 682, 924, 1078
EcoT22I ATGCAT 1 cut(s) 1019
EcoT38I GRGCYC 1 cut(s) 845
ErhI CCWWGG 3 cut(s) 682, 924, 1078
FaeI CATG 6 cut(s) 805, 841, 965, 1157, 1163, 1194
FaqI GGGAC 2 cut(s) 629, 725
FatI CATG 6 cut(s) 801, 837, 961, 1153, 1159, 1190
FauI CCCGC 2 cut(s) 459, 649
FauNDI CATATG 1 cut(s) 103
FbaI TGATCA 1 cut(s) 754
FblI GTMKAC 1 cut(s) 1330
Fnu4HI GCNGC 6 cut(s) 222, 274, 464, 512, 905, 972
FokI GGATG 4 cut(s) 111, 385, 1159, 1286
FriOI GRGCYC 1 cut(s) 845
Fsp4HI GCNGC 6 cut(s) 222, 274, 464, 512, 905, 972
FspBI CTAG 6 cut(s) 186, 350, 848, 935, 992, 1230
GlaI GCGC 3 cut(s) 147, 225, 268
GluI GCNGC 6 cut(s) 222, 274, 464, 512, 905, 972
GsaI CCCAGC 1 cut(s) 1111
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 6 cut(s) 169, 244, 640, 687, 923, 1112
HapII CCGG 4 cut(s) 218, 277, 979, 1039
HgaI GACGC 1 cut(s) 159
HhaI GCGC 3 cut(s) 148, 226, 269
Hin1II CATG 6 cut(s) 805, 841, 965, 1157, 1163, 1194
Hin6I GCGC 3 cut(s) 146, 224, 267
HinP1I GCGC 3 cut(s) 146, 224, 267
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 8 cut(s) 494, 604, 617, 727, 955, 1100, 1175, 1211
HpaII CCGG 4 cut(s) 218, 277, 979, 1039
HphI GGTGA 2 cut(s) 503, 1148
Hpy166II GTNNAC 3 cut(s) 12, 1174, 1331
Hpy188I TCNGA 7 cut(s) 76, 142, 299, 308, 403, 826, 1180
Hpy188III TCNNGA 5 cut(s) 601, 761, 848, 979, 1025
Hpy8I GTNNAC 3 cut(s) 12, 1174, 1331
Hpy99I CGWCG 2 cut(s) 153, 259
HpyAV CCTTC 3 cut(s) 356, 416, 1022
HpyCH4III ACNGT 1 cut(s) 716
HpyCH4IV ACGT 4 cut(s) 568, 987, 1203, 1308
HpyCH4V TGCA 8 cut(s) 4, 273, 434, 695, 801, 1017, 1159, 1316
HpyF3I CTNAG 5 cut(s) 305, 627, 795, 825, 1177
HpySE526I ACGT 4 cut(s) 568, 987, 1203, 1308
Hsp92II CATG 6 cut(s) 805, 841, 965, 1157, 1163, 1194
HspAI GCGC 3 cut(s) 146, 224, 267
Kpn2I TCCGGA 1 cut(s) 978
Ksp22I TGATCA 1 cut(s) 754
LmnI GCTCC 3 cut(s) 87, 631, 837
Lsp1109I GCAGC 3 cut(s) 285, 498, 891
LweI GCATC 6 cut(s) 133, 704, 778, 1004, 1026, 1137
MaeI CTAG 6 cut(s) 186, 350, 848, 935, 992, 1230
MaeII ACGT 4 cut(s) 568, 987, 1203, 1308
MaeIII GTNAC 2 cut(s) 589, 1204
MboII GAAGA 2 cut(s) 200, 565
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 1 cut(s) 1232
MhlI GDGCHC 3 cut(s) 159, 287, 845
MluCI AATT 7 cut(s) 36, 300, 621, 771, 888, 997, 1186
MluI ACGCGT 1 cut(s) 151
MlyI GAGTC 2 cut(s) 611, 1169
Mph1103I ATGCAT 1 cut(s) 1019
MroI TCCGGA 1 cut(s) 978
MseI TTAA 1 cut(s) 1130
MslI CAYNNNNRTG 3 cut(s) 447, 1158, 1164
MspA1I CMGCKG 1 cut(s) 644
MspI CCGG 4 cut(s) 218, 277, 979, 1039
MspR9I CCNGG 1 cut(s) 811
MunI CAATTG 1 cut(s) 621
MvaI CCWGG 1 cut(s) 811
MvnI CGCG 3 cut(s) 148, 153, 269
NdeI CATATG 1 cut(s) 103
NlaIII CATG 6 cut(s) 805, 841, 965, 1157, 1163, 1194
NlaIV GGNNCC 3 cut(s) 83, 192, 1050
NmeAIII GCCGAG 1 cut(s) 713
NmuCI GTSAC 1 cut(s) 589
NsiI ATGCAT 1 cut(s) 1019
NspI RCATGY 2 cut(s) 805, 1157
OliI CACNNNNGTG 1 cut(s) 447
PciI ACATGT 1 cut(s) 1153
PcsI WCGNNNNNNNCGW 1 cut(s) 685
PfeI GAWTC 6 cut(s) 494, 604, 727, 955, 1100, 1211
PkrI GCNGC 6 cut(s) 223, 275, 465, 513, 906, 973
Ple19I CGATCG 1 cut(s) 426
PleI GAGTC 2 cut(s) 611, 1169
PpsI GAGTC 2 cut(s) 611, 1169
Ppu21I YACGTR 1 cut(s) 1204
PscI ACATGT 1 cut(s) 1153
Psp6I CCWGG 1 cut(s) 809
PspFI CCCAGC 1 cut(s) 1107
PspGI CCWGG 1 cut(s) 809
PspN4I GGNNCC 3 cut(s) 83, 192, 1050
PspPI GGNCC 6 cut(s) 167, 242, 639, 921, 1110, 1194
PsrI GAACNNNNNNTAC 2 cut(s) 651, 683
PsuI RGATCY 1 cut(s) 1232
PvuI CGATCG 1 cut(s) 426
RsaI GTAC 5 cut(s) 567, 706, 718, 990, 1289
RsaNI GTAC 5 cut(s) 566, 705, 717, 989, 1288
RseI CAYNNNNRTG 3 cut(s) 447, 1158, 1164
SaqAI TTAA 1 cut(s) 1130
SatI GCNGC 6 cut(s) 222, 274, 464, 512, 905, 972
Sau96I GGNCC 6 cut(s) 167, 242, 639, 921, 1110, 1194
ScaI AGTACT 1 cut(s) 718
SchI GAGTC 2 cut(s) 611, 1169
ScrFI CCNGG 1 cut(s) 811
SduI GDGCHC 3 cut(s) 159, 287, 845
SfaNI GCATC 6 cut(s) 133, 704, 778, 1004, 1026, 1137
SfcI CTRYAG 1 cut(s) 1053
SinI GGWCC 1 cut(s) 1194
SmiMI CAYNNNNRTG 3 cut(s) 447, 1158, 1164
SmlI CTYRAG 2 cut(s) 338, 1236
SmoI CTYRAG 2 cut(s) 338, 1236
SpeI ACTAGT 1 cut(s) 934
Sse9I AATT 7 cut(s) 36, 300, 621, 771, 888, 997, 1186
SsiI CCGC 8 cut(s) 221, 463, 466, 541, 642, 835, 971, 1303
SspMI CTAG 6 cut(s) 186, 350, 848, 935, 992, 1230
StyD4I CCNGG 1 cut(s) 809
StyI CCWWGG 3 cut(s) 682, 924, 1078
TaaI ACNGT 1 cut(s) 716
TaiI ACGT 4 cut(s) 571, 990, 1206, 1311
TaqI TCGA 5 cut(s) 198, 391, 397, 526, 1012
TasI AATT 7 cut(s) 36, 300, 621, 771, 888, 997, 1186
TatI WGTACW 1 cut(s) 716
TauI GCSGC 3 cut(s) 224, 466, 974
TfiI GAWTC 6 cut(s) 494, 604, 727, 955, 1100, 1211
Tru1I TTAA 1 cut(s) 1130
Tru9I TTAA 1 cut(s) 1130
TscAI CASTG 6 cut(s) 449, 493, 537, 594, 1012, 1120
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 3 cut(s) 273, 511, 904
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 3 cut(s) 120, 566, 1179
TspGWI ACGGA 1 cut(s) 597
TspRI CASTG 6 cut(s) 449, 493, 537, 594, 1012, 1120
VpaK11BI GGWCC 1 cut(s) 1194
XapI RAATTY 3 cut(s) 300, 771, 1186
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 2 cut(s) 805, 1157
XmiI GTMKAC 1 cut(s) 1330
XspI CTAG 6 cut(s) 186, 350, 848, 935, 992, 1230
ZrmI AGTACT 1 cut(s) 718
Zsp2I ATGCAT 1 cut(s) 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.