Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009221

Physical Location & Seq

Genomic Coordinates Reverse (-)

12016420 .. 12018643

Gene Structure 2224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTGTAGTTTGTCGGCGATTATGTTGTTACCAACGAAGCTGAAACCAGCTTATTCAGACAAACGGAGTAACAGTAGCAGCAGCAGCTCACTCTTCTTCAACAATAGAAGATCCAAGAAGAAGAACCAATCGATTGTTCCCGTTGCAAGGTTGTTTGGACCGGCGATTTTCGAATCATCCAAATTGAAAGTACTCTTCTTAGGGGTTGATGAGAAGAAGCATCCTTCAACGCTCCCTAGGACTTACACACTCACTCACAGTGACATTACAGCTAAACTAACCTTAGCTATTTCTCAATCCATAAACAACTCTCAGTTGCAAGGATGGGCAAATAGGCTATACCGGGATGAAGTTGTGGCAGAATGGAAGAAAGTGAAAGGGAAAATGTCGCTTCACGTTCATTGTCACATAAGCGGTGGCCATTTCCTTTTAGATCTCTTTGCAAAGTTTCGATATTTCATCTTTTGCAAAGAACTACCTGTGGTGTTGAAGGCTTTTGTGCATGGAGATGGGAACTTGTTGAACAACTATCCTGAGCTACAAGAAGCTCTTGTTTGGGTCTATTTCCATTCTAATGTCAATGAGTTCAACAAAGTCGAGTGTTGGGGTCCGCTTTGGGAAGCTGTTTCGCCTGATGGTCACAAGACTGAGACTCTTCCCGAGGCTCGGTGTGCGGACGAGTGTAGTTGTTGTTTTCCAACCGTTAGCTCGATTCCATGGTCTCATAGTCTTAGTAATGAAGGTGTAAATGGTTACTCTGGGACTCAGACTGAGGGAATTGCTACTCCAAATCCGGAGAAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009536 GO:0009579 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010271 GO:0015994 GO:0015996 GO:0016020 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051186 GO:0051187 GO:0051193 GO:0051195 GO:0055035 GO:0065007 GO:0071704 GO:0090056 GO:1901360 GO:1901361 GO:1901401 GO:1901402 GO:1901404 GO:1901405 GO:1901564 GO:1901565 GO:1901575 GO:1903647

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Staygreen

Protein Analysis

268

Amino Acids

30.05

Weight (kDa)

8.83

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Staygreen	PF12638	57 - 207	1.4e-56	Staygreen protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11911 AT4G11911 AT4G22920 AT4G22920
fragaria_vesca	FvH4_5g01230
malus_domestica	MD00G1131800.v1.1 MD04G1070300.v1.1
prunus_persica	Prupe.5G087400_v2.0.a1 Prupe.5G087400_v2.0.a1 Prupe.5G087400_v2.0.a1
pyrus_communis	pycom04g06370 pycom06g06840
rosa_chinensis	RchiOBHm_Chr7g0199861
rosa_laevigata	RLG00000003765
rosa_multiflora	Rmu_sc0002748.1_g000016
rosa_roxburghii	Rroxscaffold_3G00256430
rosa_rugosa	Rorug07G0056600
rosa_samantha	Rh7AG181800 Rh7BG184800 Rh7CG191400 Rh7DG184600
rosa_wichuraiana	Rw7G015950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	793
AciI	CCGC	3 cut(s)	414, 611, 674
AclWI	GGATC	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	418
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	147, 666
AgsI	TTSAA	6 cut(s)	100, 187, 228, 490, 523, 589
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	9 cut(s)	40, 50, 87, 272, 287, 538, 548, 623, 708
AluI	AGCT	9 cut(s)	40, 50, 87, 272, 287, 538, 548, 623, 708
Alw26I	GTCTC	2 cut(s)	644, 726
AlwI	GGATC	1 cut(s)	105
Ama87I	CYCGRG	1 cut(s)	659
Aor13HI	TCCGGA	1 cut(s)	793
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	3 cut(s)	78, 81, 84
AspA2I	CCTAGG	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	158, 608
AsuC2I	CCSGG	1 cut(s)	344
AsuII	TTCGAA	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	2 cut(s)	158, 608
AvrII	CCTAGG	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	420
BbvI	GCAGC	3 cut(s)	90, 93, 96
BccI	CCATC	3 cut(s)	318, 503, 629
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	644, 726
BfaI	CTAG	2 cut(s)	237, 805
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	3 cut(s)	79, 82, 85
BlnI	CCTAGG	1 cut(s)	236
BlsI	GCNGC	3 cut(s)	80, 83, 86
BmcAI	AGTACT	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	2 cut(s)	158, 608
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	2 cut(s)	158, 608
BmiI	GGNNCC	1 cut(s)	609
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	229
Bpu10I	CCTNAGC	2 cut(s)	283, 534
Bpu14I	TTCGAA	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	344
Bsa29I	ATCGAT	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	726
BsaJI	CCNNGG	3 cut(s)	236, 660, 716
BsaWI	WCCGGW	1 cut(s)	793
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 666
Bse118I	RCCGGY	1 cut(s)	160
BseAI	TCCGGA	1 cut(s)	793
BseCI	ATCGAT	1 cut(s)	131
BseDI	CCNNGG	3 cut(s)	236, 660, 716
BseGI	GGATG	4 cut(s)	176, 220, 329, 352
BseLI	CCNNNNNNNGG	2 cut(s)	147, 666
BseMII	CTCAG	5 cut(s)	326, 525, 639, 762, 779
BseXI	GCAGC	3 cut(s)	90, 93, 96
BshFI	GGCC	1 cut(s)	420
BshVI	ATCGAT	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	3 cut(s)	161, 343, 794
BslFI	GGGAC	1 cut(s)	775
BslI	CCNNNNNNNGG	2 cut(s)	147, 666
BsmAI	GTCTC	2 cut(s)	644, 726
BsmFI	GGGAC	1 cut(s)	775
BsnI	GGCC	1 cut(s)	420
Bso31I	GGTCTC	1 cut(s)	726
BsoBI	CYCGRG	1 cut(s)	659
Bsp119I	TTCGAA	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	793
Bsp143I	GATC	2 cut(s)	110, 433
Bsp19I	CCATGG	1 cut(s)	716
BspACI	CCGC	3 cut(s)	414, 611, 674
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	5 cut(s)	325, 526, 640, 763, 778
BspDI	ATCGAT	1 cut(s)	131
BspEI	TCCGGA	1 cut(s)	793
BspLI	GGNNCC	1 cut(s)	609
BspPI	GGATC	1 cut(s)	105
BspT104I	TTCGAA	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	726
BsrFI	RCCGGY	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	3 cut(s)	236, 660, 716
BssMI	GATC	2 cut(s)	110, 433
BssT1I	CCWWGG	2 cut(s)	236, 716
Bst4CI	ACNGT	3 cut(s)	74, 260, 703
Bst6I	CTCTTC	3 cut(s)	98, 200, 660
BstBI	TTCGAA	1 cut(s)	171
BstDEI	CTNAG	8 cut(s)	199, 283, 312, 534, 648, 731, 765, 771
BstDSI	CCRYGG	1 cut(s)	716
BstF5I	GGATG	4 cut(s)	176, 220, 329, 352
BstKTI	GATC	2 cut(s)	113, 436
BstMAI	GTCTC	2 cut(s)	644, 726
BstMBI	GATC	2 cut(s)	110, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 671
BstSCI	CCNGG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	90, 93, 96
BstX2I	RGATCY	2 cut(s)	110, 433
BstYI	RGATCY	2 cut(s)	110, 433
Bsu15I	ATCGAT	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	420
BsuTUI	ATCGAT	1 cut(s)	131
BtgI	CCRYGG	1 cut(s)	716
BtsCI	GGATG	4 cut(s)	176, 220, 329, 352
BtsIMutI	CAGTG	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	158, 608
ClaI	ATCGAT	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	2 cut(s)	503, 717
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	8 cut(s)	199, 283, 312, 534, 648, 731, 765, 771
DpnI	GATC	2 cut(s)	112, 435
DpnII	GATC	2 cut(s)	110, 433
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	3 cut(s)	98, 200, 660
EarI	CTCTTC	3 cut(s)	98, 200, 660
Eco130I	CCWWGG	2 cut(s)	236, 716
Eco31I	GGTCTC	1 cut(s)	726
Eco47I	GGWCC	2 cut(s)	158, 608
Eco88I	CYCGRG	1 cut(s)	659
EcoT14I	CCWWGG	2 cut(s)	236, 716
ErhI	CCWWGG	2 cut(s)	236, 716
FaeI	CATG	2 cut(s)	506, 720
FaiI	YATR	7 cut(s)	23, 302, 340, 410, 504, 718, 726
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FaqI	GGGAC	1 cut(s)	775
FatI	CATG	2 cut(s)	502, 716
Fnu4HI	GCNGC	3 cut(s)	79, 82, 85
FokI	GGATG	4 cut(s)	163, 207, 336, 359
Fsp4HI	GCNGC	3 cut(s)	79, 82, 85
FspBI	CTAG	2 cut(s)	237, 805
GluI	GCNGC	3 cut(s)	79, 82, 85
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	3 cut(s)	161, 343, 794
Hin1II	CATG	2 cut(s)	506, 720
HinfI	GANTC	4 cut(s)	173, 652, 712, 763
HpaII	CCGG	3 cut(s)	161, 343, 794
Hpy188I	TCNGA	2 cut(s)	58, 768
Hpy188III	TCNNGA	3 cut(s)	533, 659, 794
HpyAV	CCTTC	3 cut(s)	234, 484, 734
HpyCH4III	ACNGT	3 cut(s)	74, 260, 703
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	5 cut(s)	146, 319, 443, 468, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 671
HpyF3I	CTNAG	8 cut(s)	199, 283, 312, 534, 648, 731, 765, 771
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	2 cut(s)	506, 720
Kpn2I	TCCGGA	1 cut(s)	793
Kzo9I	GATC	2 cut(s)	110, 433
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	7 cut(s)	60, 174, 356, 492, 546, 645, 744
Lsp1109I	GCAGC	3 cut(s)	90, 93, 96
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	237, 805
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	6 cut(s)	27, 68, 260, 404, 638, 752
MalI	GATC	2 cut(s)	112, 435
MboI	GATC	2 cut(s)	110, 433
MboII	GAAGA	9 cut(s)	85, 88, 120, 130, 133, 187, 226, 379, 647
MflI	RGATCY	2 cut(s)	110, 433
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	2 cut(s)	182, 777
MluNI	TGGCCA	1 cut(s)	420
MlyI	GAGTC	2 cut(s)	646, 757
MmeI	TCCRAC	1 cut(s)	722
MnlI	CCTC	2 cut(s)	655, 766
Mox20I	TGGCCA	1 cut(s)	420
MroI	TCCGGA	1 cut(s)	793
MscI	TGGCCA	1 cut(s)	420
MslI	CAYNNNNRTG	2 cut(s)	507, 573
Msp20I	TGGCCA	1 cut(s)	420
MspI	CCGG	3 cut(s)	161, 343, 794
MspR9I	CCNGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	84, 671
NciI	CCSGG	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	716
NdeII	GATC	2 cut(s)	110, 433
NlaIII	CATG	2 cut(s)	506, 720
NlaIV	GGNNCC	1 cut(s)	609
NmuCI	GTSAC	3 cut(s)	260, 404, 638
NspV	TTCGAA	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	173, 712
PkrI	GCNGC	3 cut(s)	80, 83, 86
PleI	GAGTC	2 cut(s)	646, 757
PpsI	GAGTC	2 cut(s)	646, 757
PspN4I	GGNNCC	1 cut(s)	609
PspPI	GGNCC	2 cut(s)	158, 608
PsuI	RGATCY	2 cut(s)	110, 433
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	2 cut(s)	507, 573
SatI	GCNGC	3 cut(s)	79, 82, 85
Sau3AI	GATC	2 cut(s)	110, 433
Sau96I	GGNCC	2 cut(s)	158, 608
ScaI	AGTACT	1 cut(s)	192
SchI	GAGTC	2 cut(s)	646, 757
ScrFI	CCNGG	1 cut(s)	344
SfaNI	GCATC	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	171
SinI	GGWCC	2 cut(s)	158, 608
SmiMI	CAYNNNNRTG	2 cut(s)	507, 573
Sse9I	AATT	2 cut(s)	182, 777
SsiI	CCGC	3 cut(s)	414, 611, 674
SspMI	CTAG	2 cut(s)	237, 805
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	2 cut(s)	236, 716
TaaI	ACNGT	3 cut(s)	74, 260, 703
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	5 cut(s)	131, 171, 451, 597, 710
TasI	AATT	2 cut(s)	182, 777
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	173, 712
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	3 cut(s)	260, 404, 638
TseI	GCWGC	3 cut(s)	78, 81, 84
Tsp45I	GTSAC	3 cut(s)	260, 404, 638
TspDTI	ATGAA	4 cut(s)	363, 389, 448, 753
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	2 cut(s)	158, 608
XmaJI	CCTAGG	1 cut(s)	236
XspI	CTAG	2 cut(s)	237, 805
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.