Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009221

Physical Location & Seq

Genomic Coordinates Forward (+)

11004585 .. 11005857

Gene Structure 1273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g06840.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGCGTTCTGGCTGCTGCTTCTGTGCTTCCTTCAGATTTCAAGCCTTCACTCTCTCTCTCTCATCACATTACCAGAACACCGAAGAAAAGAAACAGGGCCATATTTCCTGTTAATGCAAGGCTATTTGGGCCAGCAATATTTGAAGCATCAAAGCTGAAGGTTTTGTTTTTAGGAGTGGATGAAAAGAAGCACCCAGGAAAGCTTCCAAGAACTTACACACTCACTCATAGTGATGTCACCTCAAAACTCACTCTGGCAATTTCACAAACAATCGACAGCTCTCAGTTGCAAGGGTGGTACAACAGGATGCAAAGAGATGAAGTTGTGGCTCAGTGGAAGAAAGTCAAGAACAAGATGTCTCTCCATGTTCACTGTCACATAAGTGGAGGCCATTTTCTCTTGGATTTGTTTGCAAGGCTCAGATACTTCATCTTCTGCAAAGAATTACCTGTGGTTTTGAAGGCCTTTGTTCATGGGGACCGCAACTTGTTCAACGGCTACCCAGAACTGCAGGAGGCTTTGGTATGGGTCTACTTCCACTCGAGCGTTCCAGAATTCAACAAGGTGGAGTGCTGGGGCACACTCATAGACGCCGCCGCCGCCGCACCTTCTAGCGAATCATCAGGCGGGGCCCACCACCAGGAAAACAAGGGCAAGGGGGAGGAGGCCACTTCTCCAAGCAACTGGGCGTTACCACAGCCGTGCCAAGAGGACTGCGACTGTTGCTTCCCACCAGCGACTTGGATTGCATGGCCCCAACAGCTTCACCAGGCAAATCAAACTAGGGTTGGGACCCACCAGAGGTTTCAGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Staygreen

Protein Analysis

273

Amino Acids

30.54

Weight (kDa)

9.05

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11911 AT4G11911 AT4G22920 AT4G22920
fragaria_vesca	FvH4_5g01230
malus_domestica	MD00G1131800.v1.1 MD04G1070300.v1.1
prunus_persica	Prupe.5G087400_v2.0.a1 Prupe.5G087400_v2.0.a1 Prupe.5G087400_v2.0.a1
pyrus_communis	pycom04g06370 pycom06g06840
rosa_chinensis	RchiOBHm_Chr7g0199861
rosa_laevigata	RLG00000003765
rosa_multiflora	Rmu_sc0002748.1_g000016
rosa_roxburghii	Rroxscaffold_3G00256430
rosa_rugosa	Rorug07G0056600
rosa_samantha	Rh7AG181800 Rh7BG184800 Rh7CG191400 Rh7DG184600
rosa_wichuraiana	Rw7G015950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	534
AciI	CCGC	6 cut(s)	484, 597, 600, 603, 606, 630
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	2 cut(s)	18, 179
AcyI	GRCGYC	1 cut(s)	594
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	643, 804
AgsI	TTSAA	5 cut(s)	43, 146, 463, 496, 562
AjnI	CCWGG	3 cut(s)	196, 642, 771
AleI	CACNNNNGTG	2 cut(s)	384, 703
AluBI	AGCT	4 cut(s)	157, 205, 282, 766
AluI	AGCT	4 cut(s)	157, 205, 282, 766
Alw26I	GTCTC	1 cut(s)	366
Ama87I	CYCGRG	1 cut(s)	544
AoxI	GGCC	7 cut(s)	99, 131, 391, 465, 633, 669, 755
ApaI	GGGCCC	1 cut(s)	637
ApeKI	GCWGC	2 cut(s)	14, 17
ApoI	RAATTY	1 cut(s)	557
AspS9I	GGNCC	7 cut(s)	99, 131, 481, 633, 634, 756, 795
AsuHPI	GGTGA	2 cut(s)	232, 761
AvaI	CYCGRG	1 cut(s)	544
AvaII	GGWCC	2 cut(s)	481, 795
BaeGI	GKGCMC	2 cut(s)	584, 637
BanII	GRGCYC	1 cut(s)	637
BbvI	GCAGC	1 cut(s)	4
BceAI	ACGGC	2 cut(s)	514, 688
BciT130I	CCWGG	3 cut(s)	198, 644, 773
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	2 cut(s)	615, 786
BfmI	CTRYAG	1 cut(s)	512
BisI	GCNGC	6 cut(s)	15, 18, 597, 600, 603, 606
BlsI	GCNGC	6 cut(s)	16, 19, 598, 601, 604, 607
Bme1390I	CCNGG	3 cut(s)	198, 644, 773
Bme18I	GGWCC	2 cut(s)	481, 795
BmeT110I	CYCGRG	1 cut(s)	544
BmgT120I	GGNCC	7 cut(s)	99, 131, 481, 633, 634, 756, 795
BmiI	GGNNCC	6 cut(s)	482, 634, 635, 758, 796, 797
BmrFI	CCNGG	3 cut(s)	198, 644, 773
BmrI	ACTGGG	1 cut(s)	697
BmsI	GCATC	2 cut(s)	158, 300
BmuI	ACTGGG	1 cut(s)	697
BsaHI	GRCGYC	1 cut(s)	594
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	2 cut(s)	643, 804
Bse1I	ACTGG	1 cut(s)	692
BseBI	CCWGG	3 cut(s)	198, 644, 773
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	187, 315
BseLI	CCNNNNNNNGG	2 cut(s)	643, 804
BseMII	CTCAG	3 cut(s)	299, 347, 436
BseNI	ACTGG	1 cut(s)	692
BseRI	GAGGAG	1 cut(s)	680
BseSI	GKGCMC	2 cut(s)	584, 637
BseXI	GCAGC	1 cut(s)	4
BseYI	CCCAGC	1 cut(s)	576
BshFI	GGCC	7 cut(s)	101, 133, 393, 467, 635, 671, 757
BsiHKCI	CYCGRG	1 cut(s)	544
BslFI	GGGAC	2 cut(s)	494, 808
BslI	CCNNNNNNNGG	2 cut(s)	643, 804
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	2 cut(s)	494, 808
BsnI	GGCC	7 cut(s)	101, 133, 393, 467, 635, 671, 757
BsoBI	CYCGRG	1 cut(s)	544
Bsp120I	GGGCCC	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	584, 637
BspACI	CCGC	6 cut(s)	484, 597, 600, 603, 606, 630
BspANI	GGCC	7 cut(s)	101, 133, 393, 467, 635, 671, 757
BspCNI	CTCAG	3 cut(s)	298, 346, 435
BspLI	GGNNCC	6 cut(s)	482, 634, 635, 758, 796, 797
BspMAI	CTGCAG	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	692
BssECI	CCNNGG	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	594
Bst2UI	CCWGG	3 cut(s)	198, 644, 773
Bst4CI	ACNGT	2 cut(s)	377, 725
BstACI	GRCGYC	1 cut(s)	594
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	3 cut(s)	285, 333, 422
BstF5I	GGATG	2 cut(s)	187, 315
BstMAI	GTCTC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 602, 605, 726, 763
BstNI	CCWGG	3 cut(s)	198, 644, 773
BstSCI	CCNGG	3 cut(s)	196, 642, 771
BstSFI	CTRYAG	1 cut(s)	512
BstSLI	GKGCMC	2 cut(s)	584, 637
BstV1I	GCAGC	1 cut(s)	4
BstXI	CCANNNNNNTGG	2 cut(s)	687, 744
BsuRI	GGCC	7 cut(s)	101, 133, 393, 467, 635, 671, 757
BtsCI	GGATG	2 cut(s)	187, 315
BtsIMutI	CAGTG	2 cut(s)	341, 373
Cac8I	GCNNGC	1 cut(s)	135
Cfr13I	GGNCC	7 cut(s)	99, 131, 481, 633, 634, 756, 795
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	3 cut(s)	368, 476, 753
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	3 cut(s)	285, 333, 422
Eco147I	AGGCCT	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	637
Eco47I	GGWCC	2 cut(s)	481, 795
Eco57I	CTGAAG	2 cut(s)	18, 179
Eco88I	CYCGRG	1 cut(s)	544
EcoO109I	RGGNCCY	2 cut(s)	633, 795
EcoRI	GAATTC	1 cut(s)	557
EcoRII	CCWGG	3 cut(s)	196, 642, 771
EcoT38I	GRGCYC	1 cut(s)	637
FaeI	CATG	3 cut(s)	371, 479, 756
FaiI	YATR	8 cut(s)	104, 231, 369, 383, 477, 529, 590, 754
FaqI	GGGAC	2 cut(s)	494, 808
FatI	CATG	3 cut(s)	367, 475, 752
FauI	CCCGC	1 cut(s)	623
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	6 cut(s)	15, 18, 597, 600, 603, 606
FokI	GGATG	2 cut(s)	194, 322
FriOI	GRGCYC	1 cut(s)	637
Fsp4HI	GCNGC	6 cut(s)	15, 18, 597, 600, 603, 606
FspBI	CTAG	2 cut(s)	615, 786
GluI	GCNGC	6 cut(s)	15, 18, 597, 600, 603, 606
GsaI	CCCAGC	1 cut(s)	580
HaeIII	GGCC	7 cut(s)	101, 133, 393, 467, 635, 671, 757
HgaI	GACGC	1 cut(s)	602
Hin1I	GRCGYC	1 cut(s)	594
Hin1II	CATG	3 cut(s)	371, 479, 756
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	1 cut(s)	620
HphI	GGTGA	2 cut(s)	232, 761
Hpy166II	GTNNAC	2 cut(s)	373, 535
Hpy188I	TCNGA	2 cut(s)	37, 425
Hpy188III	TCNNGA	2 cut(s)	349, 554
Hpy8I	GTNNAC	2 cut(s)	373, 535
HpyAV	CCTTC	5 cut(s)	42, 57, 154, 457, 621
HpyCH4III	ACNGT	2 cut(s)	377, 725
HpyCH4V	TGCA	7 cut(s)	119, 292, 313, 416, 441, 514, 752
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 602, 605, 726, 763
HpyF3I	CTNAG	3 cut(s)	285, 333, 422
Hsp92I	GRCGYC	1 cut(s)	594
Hsp92II	CATG	3 cut(s)	371, 479, 756
KflI	GGGWCCC	1 cut(s)	795
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	2 cut(s)	158, 300
MaeI	CTAG	2 cut(s)	615, 786
MaeIII	GTNAC	3 cut(s)	238, 377, 693
MboII	GAAGA	3 cut(s)	97, 352, 427
MhlI	GDGCHC	2 cut(s)	584, 637
MluCI	AATT	3 cut(s)	261, 446, 557
MnlI	CCTC	7 cut(s)	253, 383, 511, 658, 661, 706, 798
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	3 cut(s)	234, 384, 703
MspR9I	CCNGG	3 cut(s)	198, 644, 773
MvaI	CCWGG	3 cut(s)	198, 644, 773
MwoI	GCNNNNNNNGC	5 cut(s)	130, 602, 605, 726, 763
NlaIII	CATG	3 cut(s)	371, 479, 756
NlaIV	GGNNCC	6 cut(s)	482, 634, 635, 758, 796, 797
NmuCI	GTSAC	2 cut(s)	238, 377
OliI	CACNNNNGTG	2 cut(s)	384, 703
PaeR7I	CTCGAG	1 cut(s)	544
PceI	AGGCCT	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	620
PkrI	GCNGC	6 cut(s)	16, 19, 598, 601, 604, 607
PpuMI	RGGWCCY	1 cut(s)	795
Psp5II	RGGWCCY	1 cut(s)	795
Psp6I	CCWGG	3 cut(s)	196, 642, 771
PspFI	CCCAGC	1 cut(s)	576
PspGI	CCWGG	3 cut(s)	196, 642, 771
PspN4I	GGNNCC	6 cut(s)	482, 634, 635, 758, 796, 797
PspOMI	GGGCCC	1 cut(s)	633
PspPI	GGNCC	7 cut(s)	99, 131, 481, 633, 634, 756, 795
PspPPI	RGGWCCY	1 cut(s)	795
PspXI	VCTCGAGB	1 cut(s)	544
PstI	CTGCAG	1 cut(s)	516
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	3 cut(s)	234, 384, 703
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	6 cut(s)	15, 18, 597, 600, 603, 606
Sau96I	GGNCC	7 cut(s)	99, 131, 481, 633, 634, 756, 795
ScrFI	CCNGG	3 cut(s)	198, 644, 773
SduI	GDGCHC	2 cut(s)	584, 637
SfaNI	GCATC	2 cut(s)	158, 300
SfcI	CTRYAG	1 cut(s)	512
Sfr274I	CTCGAG	1 cut(s)	544
SinI	GGWCC	2 cut(s)	481, 795
SlaI	CTCGAG	1 cut(s)	544
SmiMI	CAYNNNNRTG	3 cut(s)	234, 384, 703
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
Sse9I	AATT	3 cut(s)	261, 446, 557
SseBI	AGGCCT	1 cut(s)	467
SsiI	CCGC	6 cut(s)	484, 597, 600, 603, 606, 630
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	2 cut(s)	615, 786
StuI	AGGCCT	1 cut(s)	467
StyD4I	CCNGG	3 cut(s)	196, 642, 771
TaaI	ACNGT	2 cut(s)	377, 725
TaqI	TCGA	2 cut(s)	276, 545
TasI	AATT	3 cut(s)	261, 446, 557
TauI	GCSGC	4 cut(s)	599, 602, 605, 608
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	2 cut(s)	341, 380
TseFI	GTSAC	2 cut(s)	238, 377
TseI	GCWGC	2 cut(s)	14, 17
Tsp45I	GTSAC	2 cut(s)	238, 377
TspDTI	ATGAA	4 cut(s)	198, 336, 421, 464
TspRI	CASTG	2 cut(s)	341, 380
VpaK11BI	GGWCC	2 cut(s)	481, 795
XapI	RAATTY	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	741
XhoI	CTCGAG	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	534
XspI	CTAG	2 cut(s)	615, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.