Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009221

Physical Location & Seq

Genomic Coordinates Forward (+)

9619669 .. 9626031

Gene Structure 6363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1070300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCAATATTGTATATTTTTTATTTGAATTTCTCAAGCCTTGCACGTCAACTGTTTGGGAATCAATATCGTTCACTGTTCACCCTTGTAGAGAGAAAGATGGGAGCTTTGACTGCTGCTTCTGTGCTTCCTTGGGATTTCAAGCCTTCAGTCTCTCTCTCTCGTCATAGAGGCTCTTTGTTTCACTATACAAGAACTCCCAAGAAAAGAAACAGGGCCGTAGTTCCTGTTGCGAGGCTATTTGGGCCAGCAATATTTGAAGCATCGAAGCTGAAGGTTCTGTTTTTAGGAGTGGATGAAAAGAAGCACCCAGGGAAGCTTCCAAGAACTTACACACTCACTCATAGTGATATCACCTCAAAGCTCACTCTGGCAATTTCACAAACAATCGACAACTCTCAGTTGCAAGGGTGGTACAGCAAGTTGCAAAGGGATGAAGTTGTTGCTCAGTGGAAGAAAGTTAAGGACAAGATGTCTCTCCATGTTCACTGTCACATAAGTGGAGGTCATTTCCTCTTAGATTTGTTTGCAAGGCTCAGATACTTCATCTTCTGCAAAGAATTACCTGTGGTTTTGAAGGCCTTTGTCCATGGGGACGGCAACTTGTTCAACAGCTACCCAGAACTGCAGGACGCTATGGTATGGATCTACTTCCACTCGAGCATTCCCGAATTCAACAAGGTGGAGTGCTGGGGCCCACTAGTCGACGCAGCAGCACCTTCAAGTGGGTCATCAGGCGGTGCCCACCACCAGGAAAACAACAGCGGCGGGGAGGGGGAGGAGGCAACTTCTCCAAGCAACTGGGACTTGCCAGAGACGTGTCAAGAGGAGTGCAACTGTTGCTTCCCACAACTGACTTCGATTGCATGGTCCCAAGAGCTTCCCCGTATAAATCAAACTAGGGTTGGGACCCACCAGAGCTTTCAGGGGCAAACCCAGGAAACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Staygreen

Protein Analysis

317

Amino Acids

35.72

Weight (kDa)

8.76

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Staygreen	PF12638	86 - 236	1.6e-56	Staygreen protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11911 AT4G11911 AT4G22920 AT4G22920
fragaria_vesca	FvH4_5g01230
malus_domestica	MD00G1131800.v1.1 MD04G1070300.v1.1
prunus_persica	Prupe.5G087400_v2.0.a1 Prupe.5G087400_v2.0.a1 Prupe.5G087400_v2.0.a1
pyrus_communis	pycom04g06370 pycom06g06840
rosa_chinensis	RchiOBHm_Chr7g0199861
rosa_laevigata	RLG00000003765
rosa_multiflora	Rmu_sc0002748.1_g000016
rosa_roxburghii	Rroxscaffold_3G00256430
rosa_rugosa	Rorug07G0056600
rosa_samantha	Rh7AG181800 Rh7BG184800 Rh7CG191400 Rh7DG184600
rosa_wichuraiana	Rw7G015950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	740
AccI	GTMKAC	1 cut(s)	705
AciI	CCGC	3 cut(s)	738, 765, 768
AclWI	GGATC	1 cut(s)	653
AcsI	RAATTY	2 cut(s)	28, 671
AcuI	CTGAAG	2 cut(s)	132, 293
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	2 cut(s)	725, 751
AflIII	ACRYGT	1 cut(s)	818
AgsI	TTSAA	7 cut(s)	28, 142, 260, 577, 610, 676, 723
AhdI	GACNNNNNGTC	1 cut(s)	472
AhlI	ACTAGT	1 cut(s)	700
AjiI	CACGTC	2 cut(s)	47, 819
AjnI	CCWGG	3 cut(s)	310, 750, 936
AleI	CACNNNNGTG	1 cut(s)	498
AluBI	AGCT	7 cut(s)	107, 271, 319, 364, 615, 880, 921
AluI	AGCT	7 cut(s)	107, 271, 319, 364, 615, 880, 921
Alw26I	GTCTC	3 cut(s)	157, 480, 809
AlwI	GGATC	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	658
AoxI	GGCC	4 cut(s)	216, 245, 579, 694
ApaI	GGGCCC	1 cut(s)	698
ApeKI	GCWGC	3 cut(s)	116, 710, 713
ApoI	RAATTY	2 cut(s)	28, 671
AspS9I	GGNCC	6 cut(s)	216, 245, 694, 695, 870, 909
AsuHPI	GGTGA	2 cut(s)	73, 346
AvaI	CYCGRG	1 cut(s)	658
AvaII	GGWCC	2 cut(s)	870, 909
BaeGI	GKGCMC	2 cut(s)	698, 745
BanI	GGYRCC	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	698
BbvI	GCAGC	3 cut(s)	103, 722, 725
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	2 cut(s)	203, 613
BciT130I	CCWGG	3 cut(s)	312, 752, 938
BcoDI	GTCTC	3 cut(s)	157, 480, 809
BcuI	ACTAGT	1 cut(s)	700
BfaI	CTAG	2 cut(s)	701, 900
BfmI	CTRYAG	1 cut(s)	626
BisI	GCNGC	4 cut(s)	117, 711, 714, 766
BlsI	GCNGC	4 cut(s)	118, 712, 715, 767
Bme1390I	CCNGG	3 cut(s)	312, 752, 938
Bme18I	GGWCC	2 cut(s)	870, 909
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	658
BmgBI	CACGTC	2 cut(s)	47, 819
BmgT120I	GGNCC	6 cut(s)	216, 245, 694, 695, 870, 909
BmiI	GGNNCC	6 cut(s)	695, 696, 742, 872, 910, 911
BmrFI	CCNGG	3 cut(s)	312, 752, 938
BmrI	ACTGGG	1 cut(s)	811
BmsI	GCATC	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	811
BpuEI	CTTGAG	1 cut(s)	19
BsaJI	CCNNGG	5 cut(s)	131, 310, 311, 589, 936
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	725, 751
Bse1I	ACTGG	1 cut(s)	806
BseBI	CCWGG	3 cut(s)	312, 752, 938
BseDI	CCNNGG	5 cut(s)	131, 310, 311, 589, 936
BseGI	GGATG	2 cut(s)	301, 439
BseLI	CCNNNNNNNGG	2 cut(s)	725, 751
BseMII	CTCAG	3 cut(s)	413, 461, 550
BseNI	ACTGG	1 cut(s)	806
BseRI	GAGGAG	2 cut(s)	794, 842
BseSI	GKGCMC	2 cut(s)	698, 745
BseXI	GCAGC	3 cut(s)	103, 722, 725
BseYI	CCCAGC	1 cut(s)	690
BshFI	GGCC	4 cut(s)	218, 247, 581, 696
BshNI	GGYRCC	1 cut(s)	740
BsiHKCI	CYCGRG	1 cut(s)	658
BslFI	GGGAC	4 cut(s)	608, 818, 856, 922
BslI	CCNNNNNNNGG	2 cut(s)	725, 751
BsmAI	GTCTC	3 cut(s)	157, 480, 809
BsmBI	CGTCTC	1 cut(s)	809
BsmFI	GGGAC	4 cut(s)	608, 818, 856, 922
BsmI	GAATGC	1 cut(s)	663
BsnI	GGCC	4 cut(s)	218, 247, 581, 696
BsoBI	CYCGRG	1 cut(s)	658
Bsp120I	GGGCCC	1 cut(s)	694
Bsp1286I	GDGCHC	2 cut(s)	698, 745
Bsp143I	GATC	1 cut(s)	645
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	3 cut(s)	738, 765, 768
BspANI	GGCC	4 cut(s)	218, 247, 581, 696
BspCNI	CTCAG	3 cut(s)	412, 460, 549
BspLI	GGNNCC	6 cut(s)	695, 696, 742, 872, 910, 911
BspMAI	CTGCAG	1 cut(s)	630
BspPI	GGATC	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	740
BsrI	ACTGG	1 cut(s)	806
BssECI	CCNNGG	5 cut(s)	131, 310, 311, 589, 936
BssMI	GATC	1 cut(s)	645
BssT1I	CCWWGG	2 cut(s)	131, 589
Bst2UI	CCWGG	3 cut(s)	312, 752, 938
Bst4CI	ACNGT	4 cut(s)	54, 78, 491, 839
BstAPI	GCANNNNNTGC	1 cut(s)	840
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	4 cut(s)	399, 447, 517, 536
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	2 cut(s)	301, 439
BstKTI	GATC	1 cut(s)	648
BstMAI	GTCTC	3 cut(s)	157, 480, 809
BstMBI	GATC	1 cut(s)	645
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 244, 840
BstNI	CCWGG	3 cut(s)	312, 752, 938
BstSCI	CCNGG	3 cut(s)	310, 750, 936
BstSFI	CTRYAG	1 cut(s)	626
BstSLI	GKGCMC	2 cut(s)	698, 745
BstV1I	GCAGC	3 cut(s)	103, 722, 725
BstX2I	RGATCY	1 cut(s)	645
BstXI	CCANNNNNNTGG	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	645
BsuRI	GGCC	4 cut(s)	218, 247, 581, 696
BtgI	CCRYGG	1 cut(s)	589
BtrI	CACGTC	2 cut(s)	47, 819
BtsCI	GGATG	2 cut(s)	301, 439
BtsIMutI	CAGTG	3 cut(s)	74, 455, 487
Cac8I	GCNNGC	1 cut(s)	249
Cfr13I	GGNCC	6 cut(s)	216, 245, 694, 695, 870, 909
CseI	GACGC	2 cut(s)	641, 716
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	3 cut(s)	482, 590, 867
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	4 cut(s)	399, 447, 517, 536
DpnI	GATC	1 cut(s)	647
DpnII	GATC	1 cut(s)	645
DriI	GACNNNNNGTC	1 cut(s)	472
Eam1105I	GACNNNNNGTC	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	131, 589
Eco147I	AGGCCT	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	698
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	870, 909
Eco57I	CTGAAG	2 cut(s)	132, 293
Eco88I	CYCGRG	1 cut(s)	658
EcoO109I	RGGNCCY	2 cut(s)	694, 909
EcoRI	GAATTC	1 cut(s)	671
EcoRII	CCWGG	3 cut(s)	310, 750, 936
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	2 cut(s)	131, 589
EcoT38I	GRGCYC	1 cut(s)	698
ErhI	CCWWGG	2 cut(s)	131, 589
Esp3I	CGTCTC	1 cut(s)	809
FaeI	CATG	3 cut(s)	485, 593, 870
FaqI	GGGAC	4 cut(s)	608, 818, 856, 922
FatI	CATG	3 cut(s)	481, 589, 866
FauI	CCCGC	1 cut(s)	761
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	4 cut(s)	117, 711, 714, 766
FokI	GGATG	2 cut(s)	308, 446
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	4 cut(s)	117, 711, 714, 766
FspBI	CTAG	2 cut(s)	701, 900
GluI	GCNGC	4 cut(s)	117, 711, 714, 766
GsaI	CCCAGC	1 cut(s)	694
HaeIII	GGCC	4 cut(s)	218, 247, 581, 696
HgaI	GACGC	2 cut(s)	641, 716
Hin1II	CATG	3 cut(s)	485, 593, 870
HincII	GTYRAC	2 cut(s)	50, 706
HindII	GTYRAC	2 cut(s)	50, 706
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	1 cut(s)	61
HphI	GGTGA	2 cut(s)	73, 346
Hpy166II	GTNNAC	5 cut(s)	50, 74, 81, 487, 706
Hpy188I	TCNGA	1 cut(s)	539
Hpy188III	TCNNGA	2 cut(s)	668, 824
Hpy8I	GTNNAC	5 cut(s)	50, 74, 81, 487, 706
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	4 cut(s)	156, 268, 571, 729
HpyCH4III	ACNGT	4 cut(s)	54, 78, 491, 839
HpyCH4IV	ACGT	2 cut(s)	46, 818
HpyCH4V	TGCA	8 cut(s)	44, 406, 427, 530, 555, 628, 834, 866
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 244, 840
HpyF3I	CTNAG	4 cut(s)	399, 447, 517, 536
HpySE526I	ACGT	2 cut(s)	46, 818
Hsp92II	CATG	3 cut(s)	485, 593, 870
KflI	GGGWCCC	1 cut(s)	909
Kzo9I	GATC	1 cut(s)	645
LmnI	GCTCC	1 cut(s)	104
Lsp1109I	GCAGC	3 cut(s)	103, 722, 725
LweI	GCATC	1 cut(s)	272
MaeI	CTAG	2 cut(s)	701, 900
MaeII	ACGT	2 cut(s)	46, 818
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	1 cut(s)	647
MboI	GATC	1 cut(s)	645
MboII	GAAGA	2 cut(s)	466, 541
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	2 cut(s)	698, 745
MluCI	AATT	4 cut(s)	28, 375, 560, 671
MnlI	CCTC	9 cut(s)	164, 228, 367, 497, 524, 766, 772, 775, 820
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	765
MspR9I	CCNGG	3 cut(s)	312, 752, 938
Mva1269I	GAATGC	1 cut(s)	663
MvaI	CCWGG	3 cut(s)	312, 752, 938
MwoI	GCNNNNNNNGC	3 cut(s)	113, 244, 840
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	1 cut(s)	645
NlaIII	CATG	3 cut(s)	485, 593, 870
NlaIV	GGNNCC	6 cut(s)	695, 696, 742, 872, 910, 911
NmuCI	GTSAC	1 cut(s)	491
OliI	CACNNNNGTG	1 cut(s)	498
PaeR7I	CTCGAG	1 cut(s)	658
PasI	CCCWGGG	1 cut(s)	311
PceI	AGGCCT	1 cut(s)	581
PctI	GAATGC	1 cut(s)	663
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	4 cut(s)	118, 712, 715, 767
PpuMI	RGGWCCY	1 cut(s)	909
Psp5II	RGGWCCY	1 cut(s)	909
Psp6I	CCWGG	3 cut(s)	310, 750, 936
PspFI	CCCAGC	1 cut(s)	690
PspGI	CCWGG	3 cut(s)	310, 750, 936
PspN4I	GGNNCC	6 cut(s)	695, 696, 742, 872, 910, 911
PspOMI	GGGCCC	1 cut(s)	694
PspPI	GGNCC	6 cut(s)	216, 245, 694, 695, 870, 909
PspPPI	RGGWCCY	1 cut(s)	909
PspXI	VCTCGAGB	1 cut(s)	658
PstI	CTGCAG	1 cut(s)	630
PsuI	RGATCY	1 cut(s)	645
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	498
SalI	GTCGAC	1 cut(s)	704
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	4 cut(s)	117, 711, 714, 766
Sau3AI	GATC	1 cut(s)	645
Sau96I	GGNCC	6 cut(s)	216, 245, 694, 695, 870, 909
ScrFI	CCNGG	3 cut(s)	312, 752, 938
SduI	GDGCHC	2 cut(s)	698, 745
SfaNI	GCATC	1 cut(s)	272
SfcI	CTRYAG	1 cut(s)	626
Sfr274I	CTCGAG	1 cut(s)	658
SinI	GGWCC	2 cut(s)	870, 909
SlaI	CTCGAG	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	34, 658
SmoI	CTYRAG	2 cut(s)	34, 658
SpeI	ACTAGT	1 cut(s)	700
Sse9I	AATT	4 cut(s)	28, 375, 560, 671
SseBI	AGGCCT	1 cut(s)	581
SsiI	CCGC	3 cut(s)	738, 765, 768
SspI	AATATT	2 cut(s)	9, 255
SspMI	CTAG	2 cut(s)	701, 900
StuI	AGGCCT	1 cut(s)	581
StyD4I	CCNGG	3 cut(s)	310, 750, 936
StyI	CCWWGG	2 cut(s)	131, 589
TaaI	ACNGT	4 cut(s)	54, 78, 491, 839
TaiI	ACGT	2 cut(s)	49, 821
TaqI	TCGA	5 cut(s)	266, 390, 659, 705, 860
TasI	AATT	4 cut(s)	28, 375, 560, 671
TauI	GCSGC	1 cut(s)	768
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	3 cut(s)	81, 455, 494
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	3 cut(s)	116, 710, 713
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	3 cut(s)	312, 450, 535
TspRI	CASTG	3 cut(s)	81, 455, 494
VpaK11BI	GGWCC	2 cut(s)	870, 909
XapI	RAATTY	2 cut(s)	28, 671
XhoI	CTCGAG	1 cut(s)	658
XmiI	GTMKAC	1 cut(s)	705
XspI	CTAG	2 cut(s)	701, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.