Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009221

Physical Location & Seq

Genomic Coordinates Reverse (-)

9857698 .. 9859939

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G087400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGTACTTTGACTGCTGCTTCCTCTGTGCTTCCTTCGGATTTCAAACCTTCACTCTCTCTATCTGATCACAGAGGCTCTCTCCTGCACTGTACAAAAATACCCAAGAAACGAAACAGGGCCATGGTTCCTGTTGCAAGGCTATTTGGGCCAGCCATATTTGAAGCATCAAAGCTGAAGGTTCTGTTTTTAGGAGTGGATGAGAAGAAGCACCCAGGGAAGCTTCCAAGAACTTACACCCTTACTCACAGTGATATCACCTCAAAACTCACTCTGGCAGTTTCACAGACAATAGACAACTCTCAGTTGCAAGGGTGGTACAACAAGTTACAGAGAGATGAAGTTGTGGCTGAGTGGAAGAAAGTTAAGGACAAGATGTCTCTTCATGTTCACTGCCACATAAGTGGAGGTCATTTCCTTCTAGATCTGTTTGCAAGGCTGAGATTCTTCATCTTCTGCAAAGAACTTCCTGTTGTTTTGAAGGCCTTTGTTCATGGGGATGGCAATCTGTTCAGCAAGTACCCAGAATTGCAGGAGGCTTCGGTTTGGGTTTACTTCCACTCTAGCATTCCAGAATTCAACAAGGTGGAATGTTGGGGTCCACTCAGTGATGCAGCAGCACCTTGTAGAAGCGAACCAGGTGGGGTCCACCAGGAAAACAGGAAGGAAACTTCTCCAAGCAACTGGGACTTGCCAGAGCCATGCCAAGAAGAGTGTAGCTGTTGCTTCCCACCATTGAGTTTGGTTCCGTGGCCCCAAGAGCTTCCCCATGTAAGTGAAACTAGATATGGGCCCCAGCAGCGCTTTGAGGGCCAAACCCAAGAAACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Staygreen

Protein Analysis

278

Amino Acids

31.28

Weight (kDa)

8.05

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11911 AT4G11911 AT4G22920 AT4G22920
fragaria_vesca	FvH4_5g01230
malus_domestica	MD00G1131800.v1.1 MD04G1070300.v1.1
prunus_persica	Prupe.5G087400_v2.0.a1 Prupe.5G087400_v2.0.a1 Prupe.5G087400_v2.0.a1
pyrus_communis	pycom04g06370 pycom06g06840
rosa_chinensis	RchiOBHm_Chr7g0199861
rosa_laevigata	RLG00000003765
rosa_multiflora	Rmu_sc0002748.1_g000016
rosa_roxburghii	Rroxscaffold_3G00256430
rosa_rugosa	Rorug07G0056600
rosa_samantha	Rh7AG181800 Rh7BG184800 Rh7CG191400 Rh7DG184600
rosa_wichuraiana	Rw7G015950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	575
AcuI	CTGAAG	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	608
AfaI	GTAC	4 cut(s)	7, 94, 320, 521
AfeI	AGCGCT	1 cut(s)	803
AgsI	TTSAA	4 cut(s)	46, 164, 481, 580
AhdI	GACNNNNNGTC	1 cut(s)	376
AjnI	CCWGG	3 cut(s)	214, 637, 651
AleI	CACNNNNGTG	1 cut(s)	402
AluBI	AGCT	4 cut(s)	175, 223, 720, 763
AluI	AGCT	4 cut(s)	175, 223, 720, 763
Alw26I	GTCTC	1 cut(s)	384
Aor51HI	AGCGCT	1 cut(s)	803
AoxI	GGCC	6 cut(s)	120, 149, 483, 752, 791, 811
ApaI	GGGCCC	1 cut(s)	795
ApeKI	GCWGC	4 cut(s)	17, 614, 617, 799
ApoI	RAATTY	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	804
AspS9I	GGNCC	8 cut(s)	120, 149, 599, 646, 753, 791, 792, 811
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	2 cut(s)	599, 646
BaeGI	GKGCMC	1 cut(s)	795
BanII	GRGCYC	1 cut(s)	795
BbvI	GCAGC	4 cut(s)	4, 626, 629, 811
BccI	CCATC	1 cut(s)	494
BciT130I	CCWGG	3 cut(s)	216, 639, 653
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	3 cut(s)	422, 564, 783
BfoI	RGCGCY	1 cut(s)	805
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	4 cut(s)	18, 615, 618, 800
BlsI	GCNGC	4 cut(s)	19, 616, 619, 801
Bme1390I	CCNGG	3 cut(s)	216, 639, 653
Bme18I	GGWCC	2 cut(s)	599, 646
BmeRI	GACNNNNNGTC	1 cut(s)	376
BmgT120I	GGNCC	8 cut(s)	120, 149, 599, 646, 753, 791, 792, 811
BmiI	GGNNCC	7 cut(s)	129, 600, 647, 747, 755, 793, 794
BmrFI	CCNGG	3 cut(s)	216, 639, 653
BmrI	ACTGGG	1 cut(s)	694
BmsI	GCATC	2 cut(s)	176, 601
BmuI	ACTGGG	1 cut(s)	694
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	4 cut(s)	123, 214, 215, 749
Bse1I	ACTGG	1 cut(s)	689
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	3 cut(s)	216, 639, 653
BseDI	CCNNGG	4 cut(s)	123, 214, 215, 749
BseGI	GGATG	2 cut(s)	205, 505
BseJI	GATNNNNATC	1 cut(s)	504
BseMII	CTCAG	4 cut(s)	317, 342, 431, 619
BseNI	ACTGG	1 cut(s)	689
BseSI	GKGCMC	1 cut(s)	795
BseXI	GCAGC	4 cut(s)	4, 626, 629, 811
BseYI	CCCAGC	1 cut(s)	795
BsgI	GTGCAG	1 cut(s)	71
BshFI	GGCC	6 cut(s)	122, 151, 485, 754, 793, 813
BslFI	GGGAC	1 cut(s)	701
BsmAI	GTCTC	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	701
BsmI	GAATGC	1 cut(s)	567
BsnI	GGCC	6 cut(s)	122, 151, 485, 754, 793, 813
Bsp120I	GGGCCC	1 cut(s)	791
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp1407I	TGTACA	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	67, 424
Bsp19I	CCATGG	1 cut(s)	123
BspANI	GGCC	6 cut(s)	122, 151, 485, 754, 793, 813
BspCNI	CTCAG	4 cut(s)	316, 343, 432, 618
BspLI	GGNNCC	7 cut(s)	129, 600, 647, 747, 755, 793, 794
BsrGI	TGTACA	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	689
BssECI	CCNNGG	4 cut(s)	123, 214, 215, 749
BssMI	GATC	2 cut(s)	67, 424
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	3 cut(s)	216, 639, 653
Bst4CI	ACNGT	2 cut(s)	92, 251
Bst6I	CTCTTC	2 cut(s)	387, 705
BstAUI	TGTACA	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	4 cut(s)	303, 351, 440, 605
BstDSI	CCRYGG	2 cut(s)	123, 749
BstF5I	GGATG	2 cut(s)	205, 505
BstH2I	RGCGCY	1 cut(s)	805
BstHHI	GCGC	1 cut(s)	804
BstKTI	GATC	2 cut(s)	70, 427
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	2 cut(s)	67, 424
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 760, 799, 810
BstNI	CCWGG	3 cut(s)	216, 639, 653
BstSCI	CCNGG	3 cut(s)	214, 637, 651
BstSLI	GKGCMC	1 cut(s)	795
BstV1I	GCAGC	4 cut(s)	4, 626, 629, 811
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	2 cut(s)	404, 684
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	6 cut(s)	122, 151, 485, 754, 793, 813
BtgI	CCRYGG	2 cut(s)	123, 749
BtsCI	GGATG	2 cut(s)	205, 505
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	4 cut(s)	88, 256, 391, 613
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	804
Cfr13I	GGNCC	8 cut(s)	120, 149, 599, 646, 753, 791, 792, 811
CsiI	ACCWGGT	1 cut(s)	637
Csp6I	GTAC	4 cut(s)	6, 93, 319, 520
CviAII	CATG	5 cut(s)	124, 386, 494, 702, 770
CviQI	GTAC	4 cut(s)	6, 93, 319, 520
DdeI	CTNAG	4 cut(s)	303, 351, 440, 605
DpnI	GATC	2 cut(s)	69, 426
DpnII	GATC	2 cut(s)	67, 424
DraIII	CACNNNGTG	1 cut(s)	608
DriI	GACNNNNNGTC	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	387, 705
Eam1105I	GACNNNNNGTC	1 cut(s)	376
EarI	CTCTTC	2 cut(s)	387, 705
Eco130I	CCWWGG	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	485
Eco24I	GRGCYC	1 cut(s)	795
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	599, 646
Eco47III	AGCGCT	1 cut(s)	803
Eco57I	CTGAAG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	792
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	3 cut(s)	214, 637, 651
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	795
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	5 cut(s)	127, 389, 497, 705, 773
FaiI	YATR	8 cut(s)	125, 158, 387, 401, 495, 703, 771, 789
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	5 cut(s)	123, 385, 493, 701, 769
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	4 cut(s)	18, 615, 618, 800
FokI	GGATG	2 cut(s)	212, 512
FriOI	GRGCYC	1 cut(s)	795
Fsp4HI	GCNGC	4 cut(s)	18, 615, 618, 800
FspBI	CTAG	3 cut(s)	422, 564, 783
GlaI	GCGC	1 cut(s)	803
GluI	GCNGC	4 cut(s)	18, 615, 618, 800
GsaI	CCCAGC	1 cut(s)	799
HaeII	RGCGCY	1 cut(s)	805
HaeIII	GGCC	6 cut(s)	122, 151, 485, 754, 793, 813
HhaI	GCGC	1 cut(s)	804
Hin1II	CATG	5 cut(s)	127, 389, 497, 705, 773
Hin6I	GCGC	1 cut(s)	802
HinP1I	GCGC	1 cut(s)	802
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	1 cut(s)	444
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	4 cut(s)	391, 553, 602, 649
Hpy188I	TCNGA	2 cut(s)	40, 67
Hpy188III	TCNNGA	2 cut(s)	422, 572
Hpy8I	GTNNAC	4 cut(s)	391, 553, 602, 649
HpyAV	CCTTC	6 cut(s)	45, 60, 172, 428, 475, 658
HpyCH4III	ACNGT	2 cut(s)	92, 251
HpyCH4V	TGCA	7 cut(s)	88, 137, 310, 434, 459, 532, 614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 760, 799, 810
HpyF3I	CTNAG	4 cut(s)	303, 351, 440, 605
Hsp92II	CATG	5 cut(s)	127, 389, 497, 705, 773
HspAI	GCGC	1 cut(s)	802
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	67, 424
Lsp1109I	GCAGC	4 cut(s)	4, 626, 629, 811
LweI	GCATC	2 cut(s)	176, 601
MabI	ACCWGGT	1 cut(s)	637
MaeI	CTAG	3 cut(s)	422, 564, 783
MaeIII	GTNAC	1 cut(s)	327
MalI	GATC	2 cut(s)	69, 426
MboI	GATC	2 cut(s)	67, 424
MboII	GAAGA	6 cut(s)	217, 370, 374, 439, 445, 722
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	795
MluCI	AATT	2 cut(s)	527, 575
MnlI	CCTC	6 cut(s)	34, 68, 271, 401, 529, 802
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	3 cut(s)	402, 498, 774
MspR9I	CCNGG	3 cut(s)	216, 639, 653
Mva1269I	GAATGC	1 cut(s)	567
MvaI	CCWGG	3 cut(s)	216, 639, 653
MwoI	GCNNNNNNNGC	4 cut(s)	148, 760, 799, 810
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	67, 424
NlaIII	CATG	5 cut(s)	127, 389, 497, 705, 773
NlaIV	GGNNCC	7 cut(s)	129, 600, 647, 747, 755, 793, 794
OliI	CACNNNNGTG	1 cut(s)	402
PasI	CCCWGGG	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	485
PctI	GAATGC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	444
PkrI	GCNGC	4 cut(s)	19, 616, 619, 801
Psp6I	CCWGG	3 cut(s)	214, 637, 651
PspFI	CCCAGC	1 cut(s)	795
PspGI	CCWGG	3 cut(s)	214, 637, 651
PspN4I	GGNNCC	7 cut(s)	129, 600, 647, 747, 755, 793, 794
PspOMI	GGGCCC	1 cut(s)	791
PspPI	GGNCC	8 cut(s)	120, 149, 599, 646, 753, 791, 792, 811
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	4 cut(s)	7, 94, 320, 521
RsaNI	GTAC	4 cut(s)	6, 93, 319, 520
RseI	CAYNNNNRTG	3 cut(s)	402, 498, 774
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	4 cut(s)	18, 615, 618, 800
Sau3AI	GATC	2 cut(s)	67, 424
Sau96I	GGNCC	8 cut(s)	120, 149, 599, 646, 753, 791, 792, 811
ScrFI	CCNGG	3 cut(s)	216, 639, 653
SduI	GDGCHC	1 cut(s)	795
SexAI	ACCWGGT	1 cut(s)	637
SfaNI	GCATC	2 cut(s)	176, 601
SinI	GGWCC	2 cut(s)	599, 646
SmiMI	CAYNNNNRTG	3 cut(s)	402, 498, 774
Sse9I	AATT	2 cut(s)	527, 575
SseBI	AGGCCT	1 cut(s)	485
SspMI	CTAG	3 cut(s)	422, 564, 783
StuI	AGGCCT	1 cut(s)	485
StyD4I	CCNGG	3 cut(s)	214, 637, 651
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	92, 251
TasI	AATT	2 cut(s)	527, 575
TatI	WGTACW	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	4 cut(s)	95, 256, 398, 613
TseI	GCWGC	4 cut(s)	17, 614, 617, 799
TspDTI	ATGAA	4 cut(s)	354, 374, 439, 482
TspGWI	ACGGA	1 cut(s)	738
TspRI	CASTG	4 cut(s)	95, 256, 398, 613
VpaK11BI	GGWCC	2 cut(s)	599, 646
XapI	RAATTY	1 cut(s)	575
XbaI	TCTAGA	1 cut(s)	421
XspI	CTAG	3 cut(s)	422, 564, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.