Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009221

Physical Location & Seq

Genomic Coordinates Reverse (-)

52413258 .. 52414954

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003765

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGTACTCTTGCTGCTGCTTCTTTGCTTCCTTCAGAGTTTAAACCTTCACTCTCTTTATCTGACCCCAAAAGCTCTCTGTTTTACCATAGAGGAATACCGAAGAAGAGGAACCAAGCGTTAGTTCCTGTTGCAAGGATATTTGGGCCAGCCATATTTGAAGCATCAAAGCTAAAGGTTCTGTTCTTAGGAGTGGATGAAAAGAAACATCCTGGGAATCTTCCAAGGACTTACACACTTACTCATAGTGATGTGACCTCAAAGCTCACTCTGGCCATCTCACAGACTATAAACAATTCTCAGTTGCAAGGGTGGTACAACAAATTACAAAGAGATGAGGTTGTGGCAGAGTGGAGGAAAGTAAAGGACAAGATGTCTCTCCATGTTCATTGCCATATAAGTGGAGGTCATTTCCTTTTGGATTTGTTTTCAAGGCTGAGATACTTCATCTTCTGCAAAGAGCTTCCTGTTGTTTTGAAGGCCTTTATTCATGGAGATGGCGACCTGTTCAACAGTTACCCAGAATTGGAGGAGGCTTTGGTTTGGGTTTACTTTCACTCCAACATTCCAGAATTTAACAAGGTTGAATGTTGGGGCCCACTCAGGAATGCAACATCACCGTCCGGTAGGGGACACCAGAAGGCAGCTTCCTCAAGCAACCAGGAGGACTTGGTGCCAGAAACATGCCAAGAGGACTGCAGCTGTTGCTTCCCACCACTGAGCTCCATCCCGTGGCCCCAAGAGCTTCCCCAGCCAGATGGAACTGGATATGGGGCCCAGCAGAGCTTTCTGGGGCAAACTCAAGAACCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Staygreen

Protein Analysis

272

Amino Acids

30.38

Weight (kDa)

7.13

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Staygreen	PF12638	53 - 204	2.3e-56	Staygreen protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11911 AT4G11911 AT4G22920 AT4G22920
fragaria_vesca	FvH4_5g01230
malus_domestica	MD00G1131800.v1.1 MD04G1070300.v1.1
prunus_persica	Prupe.5G087400_v2.0.a1 Prupe.5G087400_v2.0.a1 Prupe.5G087400_v2.0.a1
pyrus_communis	pycom04g06370 pycom06g06840
rosa_chinensis	RchiOBHm_Chr7g0199861
rosa_laevigata	RLG00000003765
rosa_multiflora	Rmu_sc0002748.1_g000016
rosa_roxburghii	Rroxscaffold_3G00256430
rosa_rugosa	Rorug07G0056600
rosa_samantha	Rh7AG181800 Rh7BG184800 Rh7CG191400 Rh7DG184600
rosa_wichuraiana	Rw7G015950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	673
AccB7I	CCANNNNNTGG	1 cut(s)	732
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	572
AcuI	CTGAAG	1 cut(s)	18
AfaI	GTAC	2 cut(s)	7, 317
AfiI	CCNNNNNNNGG	2 cut(s)	526, 732
AgsI	TTSAA	5 cut(s)	161, 432, 478, 511, 587
AhdI	GACNNNNNGTC	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	211, 660
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AluBI	AGCT	9 cut(s)	75, 172, 265, 463, 647, 702, 723, 745, 786
AluI	AGCT	9 cut(s)	75, 172, 265, 463, 647, 702, 723, 745, 786
Alw21I	GWGCWC	1 cut(s)	725
Alw26I	GTCTC	1 cut(s)	381
AoxI	GGCC	6 cut(s)	146, 273, 480, 595, 734, 774
ApaI	GGGCCC	2 cut(s)	599, 778
ApeKI	GCWGC	4 cut(s)	14, 17, 644, 699
ApoI	RAATTY	1 cut(s)	572
AspS9I	GGNCC	6 cut(s)	146, 595, 596, 735, 774, 775
AsuHPI	GGTGA	1 cut(s)	609
BaeGI	GKGCMC	2 cut(s)	599, 778
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	673
BanII	GRGCYC	3 cut(s)	599, 725, 778
Bbv12I	GWGCWC	1 cut(s)	725
BbvI	GCAGC	3 cut(s)	4, 656, 711
BccI	CCATC	4 cut(s)	284, 491, 734, 752
BciT130I	CCWGG	2 cut(s)	213, 662
BcoDI	GTCTC	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	697
BisI	GCNGC	4 cut(s)	15, 18, 645, 700
BlsI	GCNGC	4 cut(s)	16, 19, 646, 701
BmcAI	AGTACT	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	213, 662
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmgT120I	GGNCC	6 cut(s)	146, 595, 596, 735, 774, 775
BmiI	GGNNCC	7 cut(s)	113, 596, 597, 675, 737, 775, 776
BmrFI	CCNGG	2 cut(s)	213, 662
BmsI	GCATC	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	637, 786
BsaJI	CCNNGG	3 cut(s)	212, 224, 731
BsaWI	WCCGGW	1 cut(s)	623
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 732
Bse1I	ACTGG	1 cut(s)	769
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	213, 662
BseDI	CCNNGG	3 cut(s)	212, 224, 731
BseGI	GGATG	3 cut(s)	202, 208, 726
BseLI	CCNNNNNNNGG	2 cut(s)	526, 732
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	4 cut(s)	314, 428, 616, 710
BseNI	ACTGG	1 cut(s)	769
BseRI	GAGGAG	1 cut(s)	545
BseSI	GKGCMC	2 cut(s)	599, 778
BseXI	GCAGC	3 cut(s)	4, 656, 711
BseYI	CCCAGC	2 cut(s)	750, 777
BshFI	GGCC	6 cut(s)	148, 275, 482, 597, 736, 776
BshNI	GGYRCC	1 cut(s)	673
BsiHKAI	GWGCWC	1 cut(s)	725
BsiSI	CCGG	1 cut(s)	624
BslFI	GGGAC	1 cut(s)	645
BslI	CCNNNNNNNGG	2 cut(s)	526, 732
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	645
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	6 cut(s)	148, 275, 482, 597, 736, 776
Bsp120I	GGGCCC	2 cut(s)	595, 774
Bsp1286I	GDGCHC	3 cut(s)	599, 725, 778
BspANI	GGCC	6 cut(s)	148, 275, 482, 597, 736, 776
BspCNI	CTCAG	4 cut(s)	313, 429, 615, 711
BspLI	GGNNCC	7 cut(s)	113, 596, 597, 675, 737, 775, 776
BspMAI	CTGCAG	1 cut(s)	701
BspT107I	GGYRCC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	769
BssECI	CCNNGG	3 cut(s)	212, 224, 731
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	2 cut(s)	213, 662
Bst4CI	ACNGT	2 cut(s)	515, 621
Bst6I	CTCTTC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	705
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	5 cut(s)	187, 300, 437, 602, 719
BstDSI	CCRYGG	1 cut(s)	731
BstF5I	GGATG	3 cut(s)	202, 208, 726
BstMAI	GTCTC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	3 cut(s)	705, 742, 751
BstNI	CCWGG	2 cut(s)	213, 662
BstNSI	RCATGY	1 cut(s)	687
BstSCI	CCNGG	2 cut(s)	211, 660
BstSFI	CTRYAG	1 cut(s)	697
BstSLI	GKGCMC	2 cut(s)	599, 778
BstV1I	GCAGC	3 cut(s)	4, 656, 711
BstXI	CCANNNNNNTGG	2 cut(s)	401, 758
BsuRI	GGCC	6 cut(s)	148, 275, 482, 597, 736, 776
BtgI	CCRYGG	1 cut(s)	731
BtsCI	GGATG	3 cut(s)	202, 208, 726
BtsIMutI	CAGTG	1 cut(s)	716
Cac8I	GCNNGC	1 cut(s)	150
Cfr13I	GGNCC	6 cut(s)	146, 595, 596, 735, 774, 775
Csp6I	GTAC	2 cut(s)	6, 316
CviAII	CATG	3 cut(s)	383, 491, 684
CviQI	GTAC	2 cut(s)	6, 316
DdeI	CTNAG	5 cut(s)	187, 300, 437, 602, 719
DraI	TTTAAA	1 cut(s)	43
DriI	GACNNNNNGTC	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	101
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	723
Eco130I	CCWWGG	1 cut(s)	224
Eco147I	AGGCCT	1 cut(s)	482
Eco24I	GRGCYC	3 cut(s)	599, 725, 778
Eco53kI	GAGCTC	1 cut(s)	723
Eco57I	CTGAAG	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	723
EcoO109I	RGGNCCY	2 cut(s)	595, 774
EcoRII	CCWGG	2 cut(s)	211, 660
EcoT14I	CCWWGG	1 cut(s)	224
EcoT38I	GRGCYC	3 cut(s)	599, 725, 778
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	3 cut(s)	386, 494, 687
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	3 cut(s)	382, 490, 683
Fnu4HI	GCNGC	4 cut(s)	15, 18, 645, 700
FokI	GGATG	3 cut(s)	195, 209, 713
FriOI	GRGCYC	3 cut(s)	599, 725, 778
Fsp4HI	GCNGC	4 cut(s)	15, 18, 645, 700
GluI	GCNGC	4 cut(s)	15, 18, 645, 700
GsaI	CCCAGC	2 cut(s)	754, 781
HaeIII	GGCC	6 cut(s)	148, 275, 482, 597, 736, 776
HapII	CCGG	1 cut(s)	624
Hin1II	CATG	3 cut(s)	386, 494, 687
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	624
HphI	GGTGA	1 cut(s)	609
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	2 cut(s)	37, 64
Hpy188III	TCNNGA	3 cut(s)	569, 604, 803
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	4 cut(s)	42, 57, 472, 634
HpyCH4III	ACNGT	2 cut(s)	515, 621
HpyCH4V	TGCA	5 cut(s)	134, 307, 456, 611, 699
HpyF10VI	GCNNNNNNNGC	3 cut(s)	705, 742, 751
HpyF3I	CTNAG	5 cut(s)	187, 300, 437, 602, 719
Hsp92II	CATG	3 cut(s)	386, 494, 687
LmnI	GCTCC	1 cut(s)	728
Lsp1109I	GCAGC	3 cut(s)	4, 656, 711
LweI	GCATC	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	253, 515
MboII	GAAGA	4 cut(s)	115, 118, 212, 442
MhlI	GDGCHC	3 cut(s)	599, 725, 778
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	4 cut(s)	295, 323, 524, 572
MluNI	TGGCCA	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	585
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	2 cut(s)	42, 576
MslI	CAYNNNNRTG	3 cut(s)	249, 399, 495
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	702
MspI	CCGG	1 cut(s)	624
MspR9I	CCNGG	2 cut(s)	213, 662
MssI	GTTTAAAC	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	2 cut(s)	213, 662
MwoI	GCNNNNNNNGC	3 cut(s)	705, 742, 751
NlaIII	CATG	3 cut(s)	386, 494, 687
NlaIV	GGNNCC	7 cut(s)	113, 596, 597, 675, 737, 775, 776
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	687
PceI	AGGCCT	1 cut(s)	482
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	732
PkrI	GCNGC	4 cut(s)	16, 19, 646, 701
PmeI	GTTTAAAC	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	725
Psp6I	CCWGG	2 cut(s)	211, 660
PspFI	CCCAGC	2 cut(s)	750, 777
PspGI	CCWGG	2 cut(s)	211, 660
PspN4I	GGNNCC	7 cut(s)	113, 596, 597, 675, 737, 775, 776
PspOMI	GGGCCC	2 cut(s)	595, 774
PspPI	GGNCC	6 cut(s)	146, 595, 596, 735, 774, 775
PstI	CTGCAG	1 cut(s)	701
PvuII	CAGCTG	1 cut(s)	702
RsaI	GTAC	2 cut(s)	7, 317
RsaNI	GTAC	2 cut(s)	6, 316
RseI	CAYNNNNRTG	3 cut(s)	249, 399, 495
SacI	GAGCTC	1 cut(s)	725
SaqAI	TTAA	2 cut(s)	42, 576
SatI	GCNGC	4 cut(s)	15, 18, 645, 700
Sau96I	GGNCC	6 cut(s)	146, 595, 596, 735, 774, 775
ScaI	AGTACT	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	213, 662
SduI	GDGCHC	3 cut(s)	599, 725, 778
SfaNI	GCATC	1 cut(s)	173
SfcI	CTRYAG	1 cut(s)	697
SmiMI	CAYNNNNRTG	3 cut(s)	249, 399, 495
SmlI	CTYRAG	2 cut(s)	652, 801
SmoI	CTYRAG	2 cut(s)	652, 801
Sse9I	AATT	4 cut(s)	295, 323, 524, 572
SseBI	AGGCCT	1 cut(s)	482
SstI	GAGCTC	1 cut(s)	725
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	211, 660
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	515, 621
TasI	AATT	4 cut(s)	295, 323, 524, 572
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	2 cut(s)	42, 576
Tru9I	TTAA	2 cut(s)	42, 576
TscAI	CASTG	1 cut(s)	723
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	4 cut(s)	14, 17, 644, 699
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	4 cut(s)	213, 377, 436, 479
TspRI	CASTG	1 cut(s)	723
Van91I	CCANNNNNTGG	1 cut(s)	732
XapI	RAATTY	1 cut(s)	572
XceI	RCATGY	1 cut(s)	687
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.