Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010110

Physical Location & Seq

Genomic Coordinates Forward (+)

12018829 .. 12021782

Gene Structure 2954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGATAAAGACTTTGGTCTCTCCTTATAGTGGATTTGGATCTCAGAAGTTGAAGTTTGACAGATCTTCTGAGAAAGTGAAGACGAGAGCAGTAAGAATGGAGCTCACAATCACTCAACCTGATGATTGGCATCTTCATCTCCGTGACGGTGATCTTCTTCATGCTGTTGTTCCCCACAGTGCGAGTAATTTTAAGAGAGCGATTGTGATGCCGAATCTGAAGCCTCCTGTCACCTCCACTGCAGCTGCCATTATTTACCGGAAATTTATCATGAAAGCTTTGCCATCTGAGAGTAGCTTTGATCCACTTATGACACTTTATTTGACTGACAAAACTCTACCTGAAGAGATCAGGCTTGCAAGGGAAAGTGGTGTGGTTTATGCGGTGAAGCTGTACCCTGCCGGAGCAACAACCAACTCTCAAGATGGTGTCACGGATCTCTTTGGAAAATGCTTACCGGTACTAGAAGAGATGGTCAAACAAAACATGCCTTTGCTGGTTCATGGGGAGGTCACAGATCCGAGTATCGATGTCTTTGACCGCGAGAAAATCTTCATTGAGACAGTTCTGCAGCCTCTAATCCAACGCCTTCCGCAGCTGAAAGTAGTGATGGAACACATCACAACCATGGATGCTGTGAATTTTGTTGAATCTTGCAAAGAAGGGTCTGTGGGTGCAACAGTCACACCACAACATCTCCTTCTCAACAGGAACGCCCTTTTCCAAGGTGGATTACAACCTCACAACTACTGTCTTCCCGTTCTCAAAAGAGAAATACATAGAGAAGCCATTGTCAAAGCTGTAACTAGTGGAAGCAAGAAGTTCTTCCTCGGCACAGATAGTGCTCCACATGAACGGAGTAGAAAAGAATCATCCTGCGGATGTGCTGGTATTTACAGCGCTCCCATTGCCTTGTCCCTATACGCCAAGGTCTTTGATGAGGCGGGTGCGCTGGACAAGTTGGAAGCTTTCACCAGTTTCAATGGACCTGATTTCTATGGCCTTCCGAGAAACTCGTCAAAGATCACACTGAAGAAATCTCCTTGGAAGGTTCCAGACGTTTTCAACTTCCCATTCGGAGAGATCGTCCCTATGTTTGCTGGAGAAACCCTTCAATGGCAACCGTTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006207 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016810 GO:0016812 GO:0018130 GO:0019438 GO:0019637 GO:0019856 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Amidohydro_1

Protein Analysis

377

Amino Acids

41.95

Weight (kDa)

8.64

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidohydro_1	PF01979	42 - 355	1.3e-29	Amidohydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22930 AT4G22930
fragaria_vesca	FvH4_6g26410 FvH4_6g26410 FvH4_6g26410 FvH4_6g26410
malus_domestica	MD09G1233100.v1.1
prunus_persica	Prupe.3G131200_v2.0.a1
pyrus_communis	pycom09g16330
rosa_chinensis	RchiOBHm_Chr2g0127911
rosa_laevigata	RLG00000018930
rosa_multiflora	Rmu_ssc0000093.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116850
rosa_rugosa	Rorug02G0270300 Rorug02G0270300 Rorug02G0270400
rosa_samantha	Rh2AG322800 Rh2BG331700 Rh2CG310800 Rh2DG350300
rosa_wichuraiana	Rw2G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	543
AciI	CCGC	5 cut(s)	383, 541, 593, 879, 944
AclWI	GGATC	4 cut(s)	46, 296, 444, 512
AcsI	RAATTY	2 cut(s)	263, 640
AcuI	CTGAAG	3 cut(s)	239, 363, 1052
AfaI	GTAC	2 cut(s)	395, 462
AfeI	AGCGCT	1 cut(s)	901
AfiI	CCNNNNNNNGG	2 cut(s)	29, 1116
AgeI	ACCGGT	1 cut(s)	457
AgsI	TTSAA	6 cut(s)	52, 650, 982, 1066, 1115, 1129
AhlI	ACTAGT	1 cut(s)	806
AluBI	AGCT	8 cut(s)	103, 245, 278, 297, 391, 598, 800, 968
AluI	AGCT	8 cut(s)	103, 245, 278, 297, 391, 598, 800, 968
Alw21I	GWGCWC	2 cut(s)	105, 847
Alw26I	GTCTC	2 cut(s)	22, 554
AlwI	GGATC	4 cut(s)	46, 296, 444, 512
Aor51HI	AGCGCT	1 cut(s)	901
AoxI	GGCC	1 cut(s)	1000
ApeKI	GCWGC	4 cut(s)	242, 245, 571, 595
ApoI	RAATTY	2 cut(s)	263, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	304, 336
AsiGI	ACCGGT	1 cut(s)	457
Asp700I	GAANNNNTTC	3 cut(s)	551, 824, 1110
AspLEI	GCGC	2 cut(s)	902, 952
AspS9I	GGNCC	1 cut(s)	986
AsuHPI	GGTGA	4 cut(s)	161, 223, 397, 964
AvaII	GGWCC	1 cut(s)	986
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	2 cut(s)	86, 746
Bbv12I	GWGCWC	2 cut(s)	105, 847
BbvI	GCAGC	4 cut(s)	232, 254, 583, 607
BccI	CCATC	4 cut(s)	292, 419, 466, 604
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BcoDI	GTCTC	2 cut(s)	22, 554
BcuI	ACTAGT	1 cut(s)	806
BfaI	CTAG	2 cut(s)	464, 807
BfmI	CTRYAG	2 cut(s)	240, 569
BfoI	RGCGCY	1 cut(s)	903
BglII	AGATCT	1 cut(s)	62
BisI	GCNGC	4 cut(s)	243, 246, 572, 596
BlsI	GCNGC	4 cut(s)	244, 247, 573, 597
Bme18I	GGWCC	1 cut(s)	986
BmgT120I	GGNCC	1 cut(s)	986
BmiI	GGNNCC	1 cut(s)	1053
BmsI	GCATC	3 cut(s)	139, 198, 622
BoxI	GACNNNNGTC	1 cut(s)	14
BpiI	GAAGAC	2 cut(s)	86, 746
BpmI	CTGGAG	1 cut(s)	1122
BpuEI	CTTGAG	1 cut(s)	405
Bsa29I	ATCGAT	1 cut(s)	528
BsaBI	GATNNNNATC	2 cut(s)	37, 129
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	5 cut(s)	627, 724, 829, 927, 1043
BsaWI	WCCGGW	2 cut(s)	258, 457
BsaXI	ACNNNNNCTCC	4 cut(s)	681, 711, 1071, 1101
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 1116
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	975
Bse3DI	GCAATG	1 cut(s)	906
Bse8I	GATNNNNATC	2 cut(s)	37, 129
BseCI	ATCGAT	1 cut(s)	528
BseDI	CCNNGG	5 cut(s)	627, 724, 829, 927, 1043
BseGI	GGATG	3 cut(s)	637, 872, 887
BseJI	GATNNNNATC	2 cut(s)	37, 129
BseLI	CCNNNNNNNGG	2 cut(s)	29, 1116
BseMI	GCAATG	1 cut(s)	906
BseMII	CTCAG	3 cut(s)	56, 60, 279
BseNI	ACTGG	1 cut(s)	975
BseXI	GCAGC	4 cut(s)	232, 254, 583, 607
Bsh1236I	CGCG	1 cut(s)	543
BshFI	GGCC	1 cut(s)	1002
BshTI	ACCGGT	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	528
BsiHKAI	GWGCWC	2 cut(s)	105, 847
BsiSI	CCGG	3 cut(s)	259, 402, 458
BslFI	GGGAC	2 cut(s)	901, 1073
BslI	CCNNNNNNNGG	2 cut(s)	29, 1116
BsmAI	GTCTC	2 cut(s)	22, 554
BsmFI	GGGAC	2 cut(s)	901, 1073
BsnI	GGCC	1 cut(s)	1002
Bso31I	GGTCTC	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	105, 847
Bsp143I	GATC	9 cut(s)	38, 62, 151, 301, 348, 436, 517, 1023, 1083
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	5 cut(s)	383, 541, 593, 879, 944
BspANI	GGCC	1 cut(s)	1002
BspCNI	CTCAG	3 cut(s)	55, 61, 280
BspDI	ATCGAT	1 cut(s)	528
BspFNI	CGCG	1 cut(s)	543
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	1053
BspMAI	CTGCAG	2 cut(s)	244, 573
BspPI	GGATC	4 cut(s)	46, 296, 444, 512
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	906
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	975
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	5 cut(s)	627, 724, 829, 927, 1043
BssMI	GATC	9 cut(s)	38, 62, 151, 301, 348, 436, 517, 1023, 1083
BssT1I	CCWWGG	4 cut(s)	627, 724, 927, 1043
Bst4CI	ACNGT	6 cut(s)	149, 179, 565, 682, 752, 1125
Bst6I	CTCTTC	2 cut(s)	339, 462
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	3 cut(s)	42, 69, 288
BstDSI	CCRYGG	1 cut(s)	627
BstF5I	GGATG	3 cut(s)	637, 872, 887
BstFNI	CGCG	1 cut(s)	543
BstH2I	RGCGCY	1 cut(s)	903
BstHHI	GCGC	2 cut(s)	902, 952
BstKTI	GATC	9 cut(s)	41, 65, 154, 304, 351, 439, 520, 1026, 1086
BstMAI	GTCTC	2 cut(s)	22, 554
BstMBI	GATC	9 cut(s)	38, 62, 151, 301, 348, 436, 517, 1023, 1083
BstMWI	GCNNNNNNNGC	1 cut(s)	908
BstNSI	RCATGY	1 cut(s)	490
BstPAI	GACNNNNGTC	1 cut(s)	14
BstSFI	CTRYAG	2 cut(s)	240, 569
BstUI	CGCG	1 cut(s)	543
BstV1I	GCAGC	4 cut(s)	232, 254, 583, 607
BstV2I	GAAGAC	2 cut(s)	86, 746
BstX2I	RGATCY	4 cut(s)	38, 62, 436, 517
BstYI	RGATCY	4 cut(s)	38, 62, 436, 517
Bsu15I	ATCGAT	1 cut(s)	528
BsuRI	GGCC	1 cut(s)	1002
BsuTUI	ATCGAT	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	627
BtsCI	GGATG	3 cut(s)	637, 872, 887
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	3 cut(s)	184, 237, 1028
Cac8I	GCNNGC	1 cut(s)	357
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	2 cut(s)	902, 952
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	986
ClaI	ATCGAT	1 cut(s)	528
Csp6I	GTAC	2 cut(s)	394, 461
CspAI	ACCGGT	1 cut(s)	457
CviAII	CATG	6 cut(s)	161, 271, 487, 503, 628, 851
CviQI	GTAC	2 cut(s)	394, 461
DdeI	CTNAG	3 cut(s)	42, 69, 288
DpnI	GATC	9 cut(s)	40, 64, 153, 303, 350, 438, 519, 1025, 1085
DpnII	GATC	9 cut(s)	38, 62, 151, 301, 348, 436, 517, 1023, 1083
Eam1104I	CTCTTC	2 cut(s)	339, 462
EarI	CTCTTC	2 cut(s)	339, 462
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	4 cut(s)	627, 724, 927, 1043
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	986
Eco47III	AGCGCT	1 cut(s)	901
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	239, 363, 1052
EcoICRI	GAGCTC	1 cut(s)	103
EcoT14I	CCWWGG	4 cut(s)	627, 724, 927, 1043
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	4 cut(s)	627, 724, 927, 1043
FaeI	CATG	6 cut(s)	164, 274, 490, 506, 631, 854
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	2 cut(s)	901, 1073
FatI	CATG	6 cut(s)	160, 270, 486, 502, 627, 850
FauI	CCCGC	1 cut(s)	937
Fnu4HI	GCNGC	4 cut(s)	243, 246, 572, 596
FokI	GGATG	3 cut(s)	644, 859, 894
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	4 cut(s)	243, 246, 572, 596
FspBI	CTAG	2 cut(s)	464, 807
GlaI	GCGC	2 cut(s)	901, 951
GluI	GCNGC	4 cut(s)	243, 246, 572, 596
GsuI	CTGGAG	1 cut(s)	1122
HaeII	RGCGCY	1 cut(s)	903
HaeIII	GGCC	1 cut(s)	1002
HapII	CCGG	3 cut(s)	259, 402, 458
HhaI	GCGC	2 cut(s)	902, 952
Hin1II	CATG	6 cut(s)	164, 274, 490, 506, 631, 854
Hin6I	GCGC	2 cut(s)	900, 950
HinP1I	GCGC	2 cut(s)	900, 950
HindIII	AAGCTT	2 cut(s)	276, 966
HinfI	GANTC	3 cut(s)	214, 650, 869
HpaII	CCGG	3 cut(s)	259, 402, 458
HphI	GGTGA	4 cut(s)	161, 223, 397, 964
Hpy188I	TCNGA	7 cut(s)	45, 70, 219, 289, 522, 1008, 1079
Hpy188III	TCNNGA	3 cut(s)	271, 422, 1055
HpyAV	CCTTC	6 cut(s)	599, 656, 710, 1013, 1042, 1121
HpyCH4III	ACNGT	6 cut(s)	149, 179, 565, 682, 752, 1125
HpyCH4IV	ACGT	1 cut(s)	1059
HpyCH4V	TGCA	5 cut(s)	242, 359, 571, 657, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	908
HpyF3I	CTNAG	3 cut(s)	42, 69, 288
HpySE526I	ACGT	1 cut(s)	1059
Hsp92II	CATG	6 cut(s)	164, 274, 490, 506, 631, 854
HspAI	GCGC	2 cut(s)	900, 950
Kzo9I	GATC	9 cut(s)	38, 62, 151, 301, 348, 436, 517, 1023, 1083
LmnI	GCTCC	4 cut(s)	100, 404, 850, 907
Lsp1109I	GCAGC	4 cut(s)	232, 254, 583, 607
LweI	GCATC	3 cut(s)	139, 198, 622
MaeI	CTAG	2 cut(s)	464, 807
MaeII	ACGT	1 cut(s)	1059
MaeIII	GTNAC	6 cut(s)	143, 229, 430, 511, 682, 802
MalI	GATC	9 cut(s)	40, 64, 153, 303, 350, 438, 519, 1025, 1085
MboI	GATC	9 cut(s)	38, 62, 151, 301, 348, 436, 517, 1023, 1083
MflI	RGATCY	4 cut(s)	38, 62, 436, 517
MhlI	GDGCHC	2 cut(s)	105, 847
MluCI	AATT	3 cut(s)	187, 263, 640
MmeI	TCCRAC	2 cut(s)	607, 942
MnlI	CCTC	7 cut(s)	234, 244, 502, 585, 750, 839, 934
MroXI	GAANNNNTTC	3 cut(s)	551, 824, 1110
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	2 cut(s)	141, 626
MspA1I	CMGCKG	2 cut(s)	245, 598
MspI	CCGG	3 cut(s)	259, 402, 458
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	1 cut(s)	908
NcoI	CCATGG	1 cut(s)	627
NdeII	GATC	9 cut(s)	38, 62, 151, 301, 348, 436, 517, 1023, 1083
NlaIII	CATG	6 cut(s)	164, 274, 490, 506, 631, 854
NlaIV	GGNNCC	1 cut(s)	1053
NmeAIII	GCCGAG	1 cut(s)	810
NmuCI	GTSAC	5 cut(s)	143, 229, 430, 511, 682
NspI	RCATGY	1 cut(s)	490
PagI	TCATGA	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	1083
PdmI	GAANNNNTTC	3 cut(s)	551, 824, 1110
PfeI	GAWTC	3 cut(s)	214, 650, 869
PinAI	ACCGGT	1 cut(s)	457
PkrI	GCNGC	4 cut(s)	244, 247, 573, 597
PshAI	GACNNNNGTC	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	1053
PspPI	GGNCC	1 cut(s)	986
PstI	CTGCAG	2 cut(s)	244, 573
PsuI	RGATCY	4 cut(s)	38, 62, 436, 517
PvuII	CAGCTG	2 cut(s)	245, 598
RsaI	GTAC	2 cut(s)	395, 462
RsaNI	GTAC	2 cut(s)	394, 461
RseI	CAYNNNNRTG	2 cut(s)	141, 626
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	4 cut(s)	243, 246, 572, 596
Sau3AI	GATC	9 cut(s)	38, 62, 151, 301, 348, 436, 517, 1023, 1083
Sau96I	GGNCC	1 cut(s)	986
SduI	GDGCHC	2 cut(s)	105, 847
SfaNI	GCATC	3 cut(s)	139, 198, 622
SfcI	CTRYAG	2 cut(s)	240, 569
SinI	GGWCC	1 cut(s)	986
SmiMI	CAYNNNNRTG	2 cut(s)	141, 626
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
SpeI	ACTAGT	1 cut(s)	806
Sse9I	AATT	3 cut(s)	187, 263, 640
SsiI	CCGC	5 cut(s)	383, 541, 593, 879, 944
SspMI	CTAG	2 cut(s)	464, 807
SstI	GAGCTC	1 cut(s)	105
StyI	CCWWGG	4 cut(s)	627, 724, 927, 1043
TaaI	ACNGT	6 cut(s)	149, 179, 565, 682, 752, 1125
TaiI	ACGT	1 cut(s)	1062
TaqI	TCGA	1 cut(s)	528
TasI	AATT	3 cut(s)	187, 263, 640
TfiI	GAWTC	3 cut(s)	214, 650, 869
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	3 cut(s)	184, 244, 1035
TseFI	GTSAC	5 cut(s)	143, 229, 430, 511, 682
TseI	GCWGC	4 cut(s)	242, 245, 571, 595
Tsp45I	GTSAC	5 cut(s)	143, 229, 430, 511, 682
TspDTI	ATGAA	6 cut(s)	125, 149, 287, 491, 544, 867
TspGWI	ACGGA	3 cut(s)	131, 449, 871
TspRI	CASTG	3 cut(s)	184, 244, 1035
VpaK11BI	GGWCC	1 cut(s)	986
XapI	RAATTY	2 cut(s)	263, 640
XceI	RCATGY	1 cut(s)	490
XmnI	GAANNNNTTC	3 cut(s)	551, 824, 1110
XspI	CTAG	2 cut(s)	464, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.