RchiOBHm_Chr2g0127911

Dihydroorotase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010110
Physical Location & Seq
Reverse (-)
42790961 .. 42797298
6338 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49973

Sequence Viewer

Length: 1134 bp
ATGATAAAGACTTTGGTGTTGCCGATCAAGGCAGTGAAGTTTCCCACTACAAAGTTTGAAGGGTCTAACCAGTTACAATACAAAGAAAGAAAGATGGAGCTCAATATAACACGCCCTGATGATTGGCATCTTCACCTTCGTGACGGTGAACTTCTTGAAGCTGTCGTCCCCCACAGTGCAACTCATTTTGGACGGGGAATAGTGATGCCAAATCTAAAGCCCCCTGTCACCACCACTGCTGCAGCTGTGGCTTACCGAGAATCTATCTTAAAAGCACTGCCTTCTGGTAGTGGCTTCACTCCTCTTATGACACTTTATTTGACAGATACCACTAGTCCTAAAGAGATCAAGCTTGCAAGAAAAAGTGGGGTCGTATTTGCTGTAAAGCTTTACCCTGCTGGTGCCACAACAAATTCCCAAGATGGAGTCACAGATCTTTTTGGAAAATGCCTACCTGTCCTTGAGGAGATGGTTGAACAAAATATGCCTCTGCTGGTTCATGGGGAGGTTACAGATCCTGATGTTGATGTATTTGATCGTGAAAACGTATTCATTGACTCTGTTTTACAACCTTTAATCAAAAGGCTTCCACAGCTGAAGGTCGTCATGGAGCATATAACTACTATGGATGCTGTTAAGTTTGTTCAGTCTTGCGAAGAAGGTTCTGTAGCAGCAACAGTTACTCCACAGCATCTTCTTCTGAATAGGAATGCTCTATTTCAAGGAGGATTGCAGCCTCACAACTACTGTCTGCCTGTACTCAAAAGGGAGATCCACAGACAGGCTCTTGTATCAGCTGTTACTAGTGGAAGTAAAAGATTTTTTCTTGGAACTGATAGTGCTCCACATGAAAAGCGAAGAAAAGAATGTCCTTGTGGTTGTGCTGGTATATACAGTGCCCCTGTTGCTCTATCATTGTATGCAAAGGTCTTTGAAGAGGCAGGTGCTATTGACAAGCTAGAGGCATTTACAAGCTTTAATGGGCCAGACTTTTATGGCCTTCCTCGGAATACATCAAAAACAAAGCTGAGCAGAACTTCATGGAAGGTACCAGAGTGCTTCTCATTTCCATTTGGAGACATCATACCAATGTTTGCAGGAGAAATGCTTGAGTGGCAGTCGTCCTCCAATTGA

Protein Analysis

377

Amino Acids

41.72

Weight (kDa)

7.63

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amidohydro_1 PF01979 41 - 337 3.1e-22 Amidohydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22930 AT4G22930
fragaria_vesca FvH4_6g26410 FvH4_6g26410 FvH4_6g26410 FvH4_6g26410
malus_domestica MD09G1233100.v1.1
prunus_persica Prupe.3G131200_v2.0.a1
pyrus_communis pycom09g16330
rosa_chinensis RchiOBHm_Chr2g0127911
rosa_laevigata RLG00000018930
rosa_multiflora Rmu_ssc0000093.1_g000008
rosa_roxburghii Rroxscaffold_2G00116850
rosa_rugosa Rorug02G0270300 Rorug02G0270300 Rorug02G0270400
rosa_samantha Rh2AG322800 Rh2BG331700 Rh2CG310800 Rh2DG350300
rosa_wichuraiana Rw2G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 932
Acc36I ACCTGC 1 cut(s) 932
Acc65I GGTACC 1 cut(s) 1048
AccB1I GGYRCC 2 cut(s) 401, 1048
AclWI GGATC 2 cut(s) 509, 766
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 2 cut(s) 759, 1050
AfiI CCNNNNNNNGG 1 cut(s) 781
AgsI TTSAA 5 cut(s) 59, 158, 476, 722, 935
AhlI ACTAGT 2 cut(s) 332, 803
AleI CACNNNNGTG 1 cut(s) 138
Alw21I GWGCWC 2 cut(s) 102, 844
Alw26I GTCTC 1 cut(s) 1071
AlwI GGATC 2 cut(s) 509, 766
AlwNI CAGNNNCTG 1 cut(s) 518
AoxI GGCC 2 cut(s) 983, 997
ApeKI GCWGC 4 cut(s) 239, 242, 671, 733
ApoI RAATTY 1 cut(s) 412
ArsI GACNNNNNNTTYG 2 cut(s) 301, 333
Asp718I GGTACC 1 cut(s) 1048
AspS9I GGNCC 1 cut(s) 983
AsuHPI GGTGA 3 cut(s) 125, 158, 220
BaeGI GKGCMC 1 cut(s) 901
BaeI ACNNNNGTAYC 2 cut(s) 1040, 1073
BanI GGYRCC 2 cut(s) 401, 1048
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 2 cut(s) 102, 844
BbvI GCAGC 4 cut(s) 226, 254, 683, 745
BccI CCATC 3 cut(s) 88, 416, 463
BcoDI GTCTC 1 cut(s) 1071
BcuI ACTAGT 2 cut(s) 332, 803
BfaI CTAG 3 cut(s) 333, 804, 959
BfmI CTRYAG 2 cut(s) 240, 666
BfuAI ACCTGC 1 cut(s) 932
BglII AGATCT 1 cut(s) 433
BisI GCNGC 4 cut(s) 240, 243, 672, 734
BlpI GCTNAGC 1 cut(s) 1028
BlsI GCNGC 4 cut(s) 241, 244, 673, 735
BmgT120I GGNCC 1 cut(s) 983
BmiI GGNNCC 2 cut(s) 403, 1050
BmsI GCATC 4 cut(s) 136, 195, 619, 700
BplI GAGNNNNNCTC 2 cut(s) 1046, 1078
Bpu1102I GCTNAGC 1 cut(s) 1028
BpuEI CTTGAG 2 cut(s) 482, 1130
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 1004
BsaXI ACNNNNNCTCC 2 cut(s) 667, 697
Bsc4I CCNNNNNNNGG 1 cut(s) 781
Bse1I ACTGG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 1004
BseGI GGATG 1 cut(s) 634
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 781
BseMII CTCAG 1 cut(s) 1019
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 2 cut(s) 291, 479
BseSI GKGCMC 1 cut(s) 901
BseXI GCAGC 4 cut(s) 226, 254, 683, 745
BshFI GGCC 2 cut(s) 985, 999
BshNI GGYRCC 2 cut(s) 401, 1048
BsiHKAI GWGCWC 2 cut(s) 102, 844
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 781
BsmAI GTCTC 1 cut(s) 1071
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 2 cut(s) 985, 999
Bsp1286I GDGCHC 3 cut(s) 102, 844, 901
Bsp143I GATC 6 cut(s) 24, 345, 433, 514, 535, 771
Bsp1720I GCTNAGC 1 cut(s) 1028
BspANI GGCC 2 cut(s) 985, 999
BspCNI CTCAG 1 cut(s) 1020
BspLI GGNNCC 2 cut(s) 403, 1050
BspMAI CTGCAG 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 932
BspPI GGATC 2 cut(s) 509, 766
BspT107I GGYRCC 2 cut(s) 401, 1048
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 1004
BssMI GATC 6 cut(s) 24, 345, 433, 514, 535, 771
Bst4CI ACNGT 5 cut(s) 146, 176, 679, 749, 896
Bst6I CTCTTC 1 cut(s) 930
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 1028
BstF5I GGATG 1 cut(s) 634
BstKTI GATC 6 cut(s) 27, 348, 436, 517, 538, 774
BstMAI GTCTC 1 cut(s) 1071
BstMBI GATC 6 cut(s) 24, 345, 433, 514, 535, 771
BstMWI GCNNNNNNNGC 4 cut(s) 248, 592, 905, 1114
BstSFI CTRYAG 2 cut(s) 240, 666
BstSLI GKGCMC 1 cut(s) 901
BstV1I GCAGC 4 cut(s) 226, 254, 683, 745
BstX2I RGATCY 3 cut(s) 433, 514, 771
BstYI RGATCY 3 cut(s) 433, 514, 771
BsuRI GGCC 2 cut(s) 985, 999
BtsCI GGATG 1 cut(s) 634
BtsI GCAGTG 3 cut(s) 39, 234, 275
BtsIMutI CAGTG 5 cut(s) 39, 181, 234, 275, 901
BveI ACCTGC 1 cut(s) 932
Cac8I GCNNGC 1 cut(s) 354
CaiI CAGNNNCTG 1 cut(s) 518
Cfr13I GGNCC 1 cut(s) 983
Csp6I GTAC 2 cut(s) 758, 1049
CviAII CATG 4 cut(s) 500, 607, 848, 1041
CviQI GTAC 2 cut(s) 758, 1049
DdeI CTNAG 1 cut(s) 1028
DpnI GATC 6 cut(s) 26, 347, 435, 516, 537, 773
DpnII GATC 6 cut(s) 24, 345, 433, 514, 535, 771
Eam1104I CTCTTC 1 cut(s) 930
EarI CTCTTC 1 cut(s) 930
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 617
EcoICRI GAGCTC 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 4 cut(s) 503, 610, 851, 1044
FaqI GGGAC 1 cut(s) 152
FatI CATG 4 cut(s) 499, 606, 847, 1040
Fnu4HI GCNGC 4 cut(s) 240, 243, 672, 734
FokI GGATG 1 cut(s) 641
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 4 cut(s) 240, 243, 672, 734
FspBI CTAG 3 cut(s) 333, 804, 959
GluI GCNGC 4 cut(s) 240, 243, 672, 734
HaeIII GGCC 2 cut(s) 985, 999
Hin1II CATG 4 cut(s) 503, 610, 851, 1044
HindIII AAGCTT 3 cut(s) 350, 386, 973
HinfI GANTC 3 cut(s) 260, 426, 557
HphI GGTGA 3 cut(s) 125, 158, 220
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 702, 1008
Hpy188III TCNNGA 4 cut(s) 140, 155, 518, 539
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 7 cut(s) 53, 146, 291, 592, 653, 1010, 1039
HpyCH4III ACNGT 5 cut(s) 146, 176, 679, 749, 896
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 6 cut(s) 179, 242, 356, 733, 923, 1097
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 592, 905, 1114
HpyF3I CTNAG 1 cut(s) 1028
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 4 cut(s) 503, 610, 851, 1044
KpnI GGTACC 1 cut(s) 1052
Kzo9I GATC 6 cut(s) 24, 345, 433, 514, 535, 771
LmnI GCTCC 3 cut(s) 97, 610, 847
Lsp1109I GCAGC 4 cut(s) 226, 254, 683, 745
LweI GCATC 4 cut(s) 136, 195, 619, 700
MaeI CTAG 3 cut(s) 333, 804, 959
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 7 cut(s) 72, 140, 226, 427, 508, 679, 799
MalI GATC 6 cut(s) 26, 347, 435, 516, 537, 773
MboI GATC 6 cut(s) 24, 345, 433, 514, 535, 771
MboII GAAGA 6 cut(s) 122, 668, 686, 689, 870, 947
MfeI CAATTG 1 cut(s) 1129
MflI RGATCY 3 cut(s) 433, 514, 771
MhlI GDGCHC 3 cut(s) 102, 844, 901
MluCI AATT 2 cut(s) 412, 1129
MlyI GAGTC 2 cut(s) 435, 551
MnlI CCTC 9 cut(s) 312, 457, 498, 499, 719, 747, 931, 955, 1014
MseI TTAA 4 cut(s) 269, 575, 636, 978
MslI CAYNNNNRTG 2 cut(s) 138, 1088
MspA1I CMGCKG 3 cut(s) 245, 595, 797
MunI CAATTG 1 cut(s) 1129
Mva1269I GAATGC 1 cut(s) 715
MwoI GCNNNNNNNGC 4 cut(s) 248, 592, 905, 1114
NdeII GATC 6 cut(s) 24, 345, 433, 514, 535, 771
NlaIII CATG 4 cut(s) 503, 610, 851, 1044
NlaIV GGNNCC 2 cut(s) 403, 1050
NmuCI GTSAC 3 cut(s) 140, 226, 427
OliI CACNNNNGTG 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 932
PctI GAATGC 1 cut(s) 715
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 4 cut(s) 241, 244, 673, 735
PleI GAGTC 2 cut(s) 434, 551
PpsI GAGTC 2 cut(s) 434, 551
Psp124BI GAGCTC 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 403, 1050
PspPI GGNCC 1 cut(s) 983
PstI CTGCAG 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 518
PsuI RGATCY 3 cut(s) 433, 514, 771
PvuII CAGCTG 3 cut(s) 245, 595, 797
RsaI GTAC 2 cut(s) 759, 1050
RsaNI GTAC 2 cut(s) 758, 1049
RseI CAYNNNNRTG 2 cut(s) 138, 1088
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 4 cut(s) 269, 575, 636, 978
SatI GCNGC 4 cut(s) 240, 243, 672, 734
Sau3AI GATC 6 cut(s) 24, 345, 433, 514, 535, 771
Sau96I GGNCC 1 cut(s) 983
SchI GAGTC 2 cut(s) 435, 551
SduI GDGCHC 3 cut(s) 102, 844, 901
SfaNI GCATC 4 cut(s) 136, 195, 619, 700
SfcI CTRYAG 2 cut(s) 240, 666
SmiMI CAYNNNNRTG 2 cut(s) 138, 1088
SmlI CTYRAG 2 cut(s) 461, 1109
SmoI CTYRAG 2 cut(s) 461, 1109
SpeI ACTAGT 2 cut(s) 332, 803
Sse9I AATT 2 cut(s) 412, 1129
SspMI CTAG 3 cut(s) 333, 804, 959
SstI GAGCTC 1 cut(s) 102
TaaI ACNGT 5 cut(s) 146, 176, 679, 749, 896
TaiI ACGT 1 cut(s) 549
TasI AATT 2 cut(s) 412, 1129
TatI WGTACW 1 cut(s) 757
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 4 cut(s) 269, 575, 636, 978
Tru9I TTAA 4 cut(s) 269, 575, 636, 978
TscAI CASTG 5 cut(s) 39, 181, 241, 282, 901
TseFI GTSAC 3 cut(s) 140, 226, 427
TseI GCWGC 4 cut(s) 239, 242, 671, 733
Tsp45I GTSAC 3 cut(s) 140, 226, 427
TspDTI ATGAA 4 cut(s) 488, 541, 864, 1029
TspRI CASTG 5 cut(s) 39, 181, 241, 282, 901
XapI RAATTY 1 cut(s) 412
XspI CTAG 3 cut(s) 333, 804, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.