Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010110

Physical Location & Seq

Genomic Coordinates Reverse (-)

20199068 .. 20205645

Gene Structure 6578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGATAAAGACTTTGGTGTTGCCGATCCAGGCAGTGAAGTTTCCCACTACAAAGTTTGAAGGGTCTAACCAGTTAAGATACAAAGAAACAAAGATGGATCTCACTATAACACGCCCTGATGATTGGCATCTTCACCTTCGTGATGGTGAACTTCTTGAAGCTGTCGTCCCCCACAGTGCAAGTCATTTTGGGAGGGGAATAGTGATGCCTAATCTGAAGCCCCCTATCACCACCACTGCTGCAGCTGTGGCTTACCGAGAATCTATCTTAAAAGCACTGCCTTCTGGTAGTGAATTCACTCCTCTTATGACACTTTATTTGACGGATACCACTAGTCCTAAAGAGATCAAGCTTGCAAGAAAAAGTGGGGTCGTATTTGCTGTAAAGCTTTACCCTGCTGGTGCTACAACAAATTCTCAAGATGGAGTTACAGATCTTTTCGGAAAATGCCTACCTGTCCTCGAGGAGATGGTTGAACAGAATATGCCTCTGCTGGTTCATGGGGAGGTTACAGATCCTGAGGTTGATGTATTTGATCGTGAAAAGGTATTTATTGAATCTGTTTTACAACCTTTAATCCAAAGGCTTCCACAGCTGAAGGTCGTCATGGAGCATATAACTACTATGGATGCTGTTAAGTTTGTTGAGTCTTGCGAAGAAGGTTCTGTAGCAGCAACAGTTACTCCACAGCATCTTCTTCTGAACAGAAATGCTCTATTTCAAGGAGGATTACAGCCTCACAACTACTGTCTGCCTGTACTCAAAAGGGAGATCCACAGACAGGCTATTGTATCAGCTGTTACTAGTGGAAACAAAAGATTTTTTCTTGGAACTGATAGTGCTCCTCATGAAAAGCGAAGAAAAGAATGTCCTTGTGGTTGTGCTGGTATATACAGTGCCCCTGTTGCTCTATCATTGTATGCAAAGGTCTTTGAAGAGGCAGGTGCTCTTGACAAGCTAGAGGCATTTACAAGCTTTAATGGGCCAGACTTTTATGGCCTTCCTCGGAATACATCAAAAACAAAGCTGAGCAGAACTTCATGGAAGGTACCAGAGTACTTCTCATTTCCATTTGGAGACATCATACCGATGTTTGCAGGAGAAACACTTGAATGGCAGCCGTCCTTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006207 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016810 GO:0016812 GO:0018130 GO:0019438 GO:0019637 GO:0019856 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Amidohydro_1

Protein Analysis

378

Amino Acids

41.88

Weight (kDa)

6.57

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidohydro_1	PF01979	41 - 337	7.4e-24	Amidohydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22930 AT4G22930
fragaria_vesca	FvH4_6g26410 FvH4_6g26410 FvH4_6g26410 FvH4_6g26410
malus_domestica	MD09G1233100.v1.1
prunus_persica	Prupe.3G131200_v2.0.a1
pyrus_communis	pycom09g16330
rosa_chinensis	RchiOBHm_Chr2g0127911
rosa_laevigata	RLG00000018930
rosa_multiflora	Rmu_ssc0000093.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116850
rosa_rugosa	Rorug02G0270300 Rorug02G0270300 Rorug02G0270400
rosa_samantha	Rh2AG322800 Rh2BG331700 Rh2CG310800 Rh2DG350300
rosa_wichuraiana	Rw2G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	932
AbsI	CCTCGAGG	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	932
Acc65I	GGTACC	1 cut(s)	1048
AccB1I	GGYRCC	1 cut(s)	1048
AclWI	GGATC	4 cut(s)	19, 105, 509, 766
AcsI	RAATTY	2 cut(s)	293, 412
AcuI	CTGAAG	2 cut(s)	236, 617
AfaI	GTAC	3 cut(s)	759, 1050, 1058
AfiI	CCNNNNNNNGG	1 cut(s)	781
AgsI	TTSAA	8 cut(s)	59, 158, 476, 557, 722, 935, 1112, 1129
AhlI	ACTAGT	2 cut(s)	332, 803
AjnI	CCWGG	1 cut(s)	27
AleI	CACNNNNGTG	1 cut(s)	138
AluBI	AGCT	9 cut(s)	161, 245, 352, 388, 595, 797, 958, 975, 1027
AluI	AGCT	9 cut(s)	161, 245, 352, 388, 595, 797, 958, 975, 1027
Alw21I	GWGCWC	2 cut(s)	844, 949
Alw26I	GTCTC	1 cut(s)	1071
AlwI	GGATC	4 cut(s)	19, 105, 509, 766
AlwNI	CAGNNNCTG	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	2 cut(s)	983, 997
ApeKI	GCWGC	4 cut(s)	239, 242, 671, 1117
ApoI	RAATTY	2 cut(s)	293, 412
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
Asp718I	GGTACC	1 cut(s)	1048
AspS9I	GGNCC	1 cut(s)	983
AsuHPI	GGTGA	3 cut(s)	125, 158, 220
AvaI	CYCGRG	1 cut(s)	461
AxyI	CCTNAGG	1 cut(s)	519
BaeGI	GKGCMC	1 cut(s)	901
BaeI	ACNNNNGTAYC	2 cut(s)	1040, 1073
BanI	GGYRCC	1 cut(s)	1048
Bbv12I	GWGCWC	2 cut(s)	844, 949
BbvI	GCAGC	4 cut(s)	226, 254, 683, 1129
BccI	CCATC	4 cut(s)	88, 137, 416, 463
BceAI	ACGGC	1 cut(s)	1105
BciT130I	CCWGG	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	1071
BcuI	ACTAGT	2 cut(s)	332, 803
BfaI	CTAG	3 cut(s)	333, 804, 959
BfmI	CTRYAG	2 cut(s)	240, 666
BfuAI	ACCTGC	1 cut(s)	932
BfuI	GTATCC	1 cut(s)	319
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	4 cut(s)	240, 243, 672, 1118
BlpI	GCTNAGC	1 cut(s)	1028
BlsI	GCNGC	4 cut(s)	241, 244, 673, 1119
BmcAI	AGTACT	1 cut(s)	1058
Bme1390I	CCNGG	1 cut(s)	29
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	983
BmiI	GGNNCC	1 cut(s)	1050
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	4 cut(s)	136, 195, 619, 700
BplI	GAGNNNNNCTC	2 cut(s)	1046, 1078
Bpu1102I	GCTNAGC	1 cut(s)	1028
BpuEI	CTTGAG	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	1004
BsaXI	ACNNNNNCTCC	2 cut(s)	667, 697
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse1I	ACTGG	1 cut(s)	70
Bse21I	CCTNAGG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	1004
BseGI	GGATG	1 cut(s)	634
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseMII	CTCAG	2 cut(s)	510, 1019
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	3 cut(s)	291, 479, 834
BseSI	GKGCMC	1 cut(s)	901
BseXI	GCAGC	4 cut(s)	226, 254, 683, 1129
BshFI	GGCC	2 cut(s)	985, 999
BshNI	GGYRCC	1 cut(s)	1048
BsiHKAI	GWGCWC	2 cut(s)	844, 949
BsiHKCI	CYCGRG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	781
BsmAI	GTCTC	1 cut(s)	1071
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	985, 999
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	3 cut(s)	844, 901, 949
Bsp143I	GATC	7 cut(s)	24, 97, 345, 433, 514, 535, 771
Bsp1720I	GCTNAGC	1 cut(s)	1028
BspANI	GGCC	2 cut(s)	985, 999
BspCNI	CTCAG	2 cut(s)	511, 1020
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	1 cut(s)	1050
BspMAI	CTGCAG	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	932
BspPI	GGATC	4 cut(s)	19, 105, 509, 766
BspT107I	GGYRCC	1 cut(s)	1048
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	1004
BssMI	GATC	7 cut(s)	24, 97, 345, 433, 514, 535, 771
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	4 cut(s)	176, 679, 749, 896
Bst6I	CTCTTC	1 cut(s)	930
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	2 cut(s)	519, 1028
BstF5I	GGATG	1 cut(s)	634
BstKTI	GATC	7 cut(s)	27, 100, 348, 436, 517, 538, 774
BstMAI	GTCTC	1 cut(s)	1071
BstMBI	GATC	7 cut(s)	24, 97, 345, 433, 514, 535, 771
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 592, 905
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	2 cut(s)	240, 666
BstSLI	GKGCMC	1 cut(s)	901
BstV1I	GCAGC	4 cut(s)	226, 254, 683, 1129
BstX2I	RGATCY	4 cut(s)	97, 433, 514, 771
BstYI	RGATCY	4 cut(s)	97, 433, 514, 771
Bsu36I	CCTNAGG	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	985, 999
BtsCI	GGATG	1 cut(s)	634
BtsI	GCAGTG	3 cut(s)	39, 234, 275
BtsIMutI	CAGTG	5 cut(s)	39, 181, 234, 275, 901
BveI	ACCTGC	1 cut(s)	932
Cac8I	GCNNGC	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	518
CciI	TCATGA	1 cut(s)	847
Cfr13I	GGNCC	1 cut(s)	983
Csp6I	GTAC	3 cut(s)	758, 1049, 1057
CviAII	CATG	4 cut(s)	500, 607, 848, 1041
CviQI	GTAC	3 cut(s)	758, 1049, 1057
DdeI	CTNAG	2 cut(s)	519, 1028
DpnI	GATC	7 cut(s)	26, 99, 347, 435, 516, 537, 773
DpnII	GATC	7 cut(s)	24, 97, 345, 433, 514, 535, 771
Eam1104I	CTCTTC	1 cut(s)	930
EarI	CTCTTC	1 cut(s)	930
Eco57I	CTGAAG	2 cut(s)	236, 617
Eco81I	CCTNAGG	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	27
FaeI	CATG	4 cut(s)	503, 610, 851, 1044
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	4 cut(s)	499, 606, 847, 1040
Fnu4HI	GCNGC	4 cut(s)	240, 243, 672, 1118
FokI	GGATG	1 cut(s)	641
Fsp4HI	GCNGC	4 cut(s)	240, 243, 672, 1118
FspBI	CTAG	3 cut(s)	333, 804, 959
GluI	GCNGC	4 cut(s)	240, 243, 672, 1118
HaeIII	GGCC	2 cut(s)	985, 999
Hin1II	CATG	4 cut(s)	503, 610, 851, 1044
HindIII	AAGCTT	3 cut(s)	350, 386, 973
HinfI	GANTC	3 cut(s)	260, 557, 647
HphI	GGTGA	3 cut(s)	125, 158, 220
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	4 cut(s)	216, 443, 702, 1008
Hpy188III	TCNNGA	7 cut(s)	140, 155, 419, 518, 539, 848, 950
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	7 cut(s)	53, 146, 291, 592, 653, 1010, 1039
HpyCH4III	ACNGT	4 cut(s)	176, 679, 749, 896
HpyCH4V	TGCA	5 cut(s)	179, 242, 356, 923, 1097
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 592, 905
HpyF3I	CTNAG	2 cut(s)	519, 1028
Hsp92II	CATG	4 cut(s)	503, 610, 851, 1044
KpnI	GGTACC	1 cut(s)	1052
Kzo9I	GATC	7 cut(s)	24, 97, 345, 433, 514, 535, 771
LmnI	GCTCC	2 cut(s)	610, 847
Lsp1109I	GCAGC	4 cut(s)	226, 254, 683, 1129
LweI	GCATC	4 cut(s)	136, 195, 619, 700
MaeI	CTAG	3 cut(s)	333, 804, 959
MaeIII	GTNAC	4 cut(s)	427, 508, 679, 799
MalI	GATC	7 cut(s)	26, 99, 347, 435, 516, 537, 773
MboI	GATC	7 cut(s)	24, 97, 345, 433, 514, 535, 771
MboII	GAAGA	6 cut(s)	122, 668, 686, 689, 870, 947
MflI	RGATCY	4 cut(s)	97, 433, 514, 771
MhlI	GDGCHC	3 cut(s)	844, 901, 949
MluCI	AATT	2 cut(s)	293, 412
MlyI	GAGTC	1 cut(s)	656
MseI	TTAA	5 cut(s)	74, 269, 575, 636, 978
MslI	CAYNNNNRTG	3 cut(s)	138, 1088, 1111
MspA1I	CMGCKG	3 cut(s)	245, 595, 797
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	248, 592, 905
NdeII	GATC	7 cut(s)	24, 97, 345, 433, 514, 535, 771
NlaIII	CATG	4 cut(s)	503, 610, 851, 1044
NlaIV	GGNNCC	1 cut(s)	1050
OliI	CACNNNNGTG	1 cut(s)	138
PaeR7I	CTCGAG	1 cut(s)	461
PagI	TCATGA	1 cut(s)	847
PaqCI	CACCTGC	1 cut(s)	932
PfeI	GAWTC	2 cut(s)	260, 557
PkrI	GCNGC	4 cut(s)	241, 244, 673, 1119
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	1050
PspPI	GGNCC	1 cut(s)	983
PspXI	VCTCGAGB	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	518
PsuI	RGATCY	4 cut(s)	97, 433, 514, 771
PvuII	CAGCTG	3 cut(s)	245, 595, 797
RsaI	GTAC	3 cut(s)	759, 1050, 1058
RsaNI	GTAC	3 cut(s)	758, 1049, 1057
RseI	CAYNNNNRTG	3 cut(s)	138, 1088, 1111
SaqAI	TTAA	5 cut(s)	74, 269, 575, 636, 978
SatI	GCNGC	4 cut(s)	240, 243, 672, 1118
Sau3AI	GATC	7 cut(s)	24, 97, 345, 433, 514, 535, 771
Sau96I	GGNCC	1 cut(s)	983
ScaI	AGTACT	1 cut(s)	1058
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	3 cut(s)	844, 901, 949
SfaNI	GCATC	4 cut(s)	136, 195, 619, 700
SfcI	CTRYAG	2 cut(s)	240, 666
Sfr274I	CTCGAG	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	461
SmiMI	CAYNNNNRTG	3 cut(s)	138, 1088, 1111
SmlI	CTYRAG	2 cut(s)	417, 461
SmoI	CTYRAG	2 cut(s)	417, 461
SpeI	ACTAGT	2 cut(s)	332, 803
Sse9I	AATT	2 cut(s)	293, 412
SspMI	CTAG	3 cut(s)	333, 804, 959
StyD4I	CCNGG	1 cut(s)	27
TaaI	ACNGT	4 cut(s)	176, 679, 749, 896
TaqI	TCGA	1 cut(s)	462
TasI	AATT	2 cut(s)	293, 412
TatI	WGTACW	2 cut(s)	757, 1056
TfiI	GAWTC	2 cut(s)	260, 557
Tru1I	TTAA	5 cut(s)	74, 269, 575, 636, 978
Tru9I	TTAA	5 cut(s)	74, 269, 575, 636, 978
TscAI	CASTG	5 cut(s)	39, 181, 241, 282, 901
TseI	GCWGC	4 cut(s)	239, 242, 671, 1117
TspDTI	ATGAA	3 cut(s)	488, 864, 1029
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	5 cut(s)	39, 181, 241, 282, 901
XapI	RAATTY	2 cut(s)	293, 412
XhoI	CTCGAG	1 cut(s)	461
XspI	CTAG	3 cut(s)	333, 804, 959
ZrmI	AGTACT	1 cut(s)	1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.