Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010110

Physical Location & Seq

Genomic Coordinates Forward (+)

13417252 .. 13420949

Gene Structure 3698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G131200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGATAAAGAGTTTGGTCTTGCCTTGCAAGGCATTGAAGTTTCCCTCTGCAAAGTTTGAAGGGTCTAACCAGTTACGGCACAAAGGAAAAAAAATGGAGCTCACTATAACACGCCCTGATGATTGGCATCTTCACCTTCGTGACGGGGAACTTCTTCAAGCTGTAGTTCCTCACAGTGCAAGTCACTTTGCAAGAGGAATAGTGATGCCAAATCTGAAACCTCCCATCACCACCACAGCTGCAGCTGTGTCTTACCGAGAATCGATCTTGAAGGCACTGCCTGCCGGTAGCGACTTCACTCCTCTTATGACTCTCTATTTGACAGATACCACAAATCCTAACGAGATCAAGCTTGCAAAAAGAAGTGGGGTTGTGTATGCTGTGAAGTTGTACCCTGCTGGTGCCACAACAAATTCTCAAGATGGGGTTACAGATCTTTTTGGAAAATGCCTACCTGTCCTTGAGGAGATGGCCCAACAGAATATGCCTCTGCTGGTTCATGGAGAGGTTACGGATGCTGATGTTGATGTATTTGATCGTGAAAAGGTTTTCATTGACACTGTTTTACAACCTTTAATCCAAAGACTTCCACAGCTGAAGGTTGTGATGGAGCATGTCACTACTAAGGATGCTGTTAAGTTCGTAGAGTCTTGCAAAGAAGGTTTTGTAGCAGCTACAGTTACTCCACAACATCTTCTTCTGAATAGAAATTCTCTTTTCCAAGGAGGATTGCAGCCTCACAATTACTGTCTGCCTGTACTTAAAAGAGAGATTCACAGACAGGCTATCGTGTCAGCTGTAACTAGTGGAAGTAAAAGATTTTTTATTGGAACTGATAGTGCTCCTCATGAGAGACGAAGAAAAGAAGCTTCTTGTGGGTGTGCTGGTATATACAGTGCCCCTGTTGCTCTATCATTATATGCCAAGGTCTTTGAAGAGGCAGGTGCTCTTGACAAGCTAGAGGCCTTTGTAAGCTTCAATGGGCCAGACTTCTATGGATTTCCTCGAAACACGTCAAAGATAAAGCTGAGCAAGACTTCATTTAAGGTACCAGACTGCTTCTCGTTTCCATTTGGAGAAATCATTCCAATGTTTGCTGGGGAAACACTTGAATGGCAGCCATCCTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006207 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016810 GO:0016812 GO:0018130 GO:0019438 GO:0019637 GO:0019856 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Amidohydro_1

Protein Analysis

378

Amino Acids

41.69

Weight (kDa)

8.7

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22930 AT4G22930
fragaria_vesca	FvH4_6g26410 FvH4_6g26410 FvH4_6g26410 FvH4_6g26410
malus_domestica	MD09G1233100.v1.1
prunus_persica	Prupe.3G131200_v2.0.a1
pyrus_communis	pycom09g16330
rosa_chinensis	RchiOBHm_Chr2g0127911
rosa_laevigata	RLG00000018930
rosa_multiflora	Rmu_ssc0000093.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116850
rosa_rugosa	Rorug02G0270300 Rorug02G0270300 Rorug02G0270400
rosa_samantha	Rh2AG322800 Rh2BG331700 Rh2CG310800 Rh2DG350300
rosa_wichuraiana	Rw2G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	932
Acc36I	ACCTGC	1 cut(s)	932
Acc65I	GGTACC	1 cut(s)	1048
AccB1I	GGYRCC	2 cut(s)	401, 1048
AcsI	RAATTY	2 cut(s)	412, 709
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	3 cut(s)	392, 759, 1050
AflIII	ACRYGT	1 cut(s)	1011
AgsI	TTSAA	8 cut(s)	37, 59, 158, 271, 935, 979, 1112, 1129
AhlI	ACTAGT	1 cut(s)	803
AjiI	CACGTC	1 cut(s)	1014
AleI	CACNNNNGTG	1 cut(s)	138
Alw21I	GWGCWC	3 cut(s)	102, 844, 949
Alw26I	GTCTC	1 cut(s)	847
AoxI	GGCC	3 cut(s)	471, 963, 983
ApeKI	GCWGC	5 cut(s)	239, 242, 671, 733, 1117
ApoI	RAATTY	2 cut(s)	412, 709
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
Asp700I	GAANNNNTTC	2 cut(s)	153, 1083
Asp718I	GGTACC	1 cut(s)	1048
AspS9I	GGNCC	2 cut(s)	472, 983
AsuHPI	GGTGA	2 cut(s)	125, 220
BaeGI	GKGCMC	1 cut(s)	901
BanI	GGYRCC	2 cut(s)	401, 1048
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	3 cut(s)	102, 844, 949
BbvI	GCAGC	5 cut(s)	226, 254, 683, 745, 1129
BccI	CCATC	5 cut(s)	233, 416, 463, 601, 1129
BceAI	ACGGC	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	847
BcuI	ACTAGT	1 cut(s)	803
BfaI	CTAG	2 cut(s)	804, 959
BfmI	CTRYAG	3 cut(s)	162, 240, 675
BfuAI	ACCTGC	1 cut(s)	932
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	5 cut(s)	240, 243, 672, 734, 1118
BlpI	GCTNAGC	1 cut(s)	1028
BlsI	GCNGC	5 cut(s)	241, 244, 673, 735, 1119
BmgBI	CACGTC	1 cut(s)	1014
BmgT120I	GGNCC	2 cut(s)	472, 983
BmiI	GGNNCC	2 cut(s)	403, 1050
BmsI	GCATC	4 cut(s)	136, 195, 505, 619
Bpu1102I	GCTNAGC	1 cut(s)	1028
BpuEI	CTTGAG	2 cut(s)	402, 482
Bsa29I	ATCGAT	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	721, 924
BsaXI	ACNNNNNCTCC	2 cut(s)	667, 697
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	126
BseCI	ATCGAT	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	721, 924
BseGI	GGATG	3 cut(s)	520, 634, 1121
BseJI	GATNNNNATC	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	1019
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	3 cut(s)	291, 479, 834
BseSI	GKGCMC	1 cut(s)	901
BseXI	GCAGC	5 cut(s)	226, 254, 683, 745, 1129
BseYI	CCCAGC	1 cut(s)	1097
BshFI	GGCC	3 cut(s)	473, 965, 985
BshNI	GGYRCC	2 cut(s)	401, 1048
BshVI	ATCGAT	1 cut(s)	263
BsiHKAI	GWGCWC	3 cut(s)	102, 844, 949
BsiSI	CCGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	847
BsmBI	CGTCTC	1 cut(s)	847
BsnI	GGCC	3 cut(s)	473, 965, 985
Bsp1286I	GDGCHC	4 cut(s)	102, 844, 901, 949
Bsp143I	GATC	4 cut(s)	264, 345, 433, 535
Bsp1720I	GCTNAGC	1 cut(s)	1028
BspANI	GGCC	3 cut(s)	473, 965, 985
BspCNI	CTCAG	1 cut(s)	1020
BspDI	ATCGAT	1 cut(s)	263
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	2 cut(s)	403, 1050
BspMAI	CTGCAG	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	932
BspT107I	GGYRCC	2 cut(s)	401, 1048
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	721, 924
BssMI	GATC	4 cut(s)	264, 345, 433, 535
BssT1I	CCWWGG	2 cut(s)	721, 924
Bst4CI	ACNGT	5 cut(s)	176, 562, 679, 749, 896
Bst6I	CTCTTC	1 cut(s)	930
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	282, 354
BstDEI	CTNAG	2 cut(s)	624, 1028
BstF5I	GGATG	3 cut(s)	520, 634, 1121
BstKTI	GATC	4 cut(s)	267, 348, 436, 538
BstMAI	GTCTC	1 cut(s)	847
BstMBI	GATC	4 cut(s)	264, 345, 433, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 905
BstNSI	RCATGY	1 cut(s)	617
BstSFI	CTRYAG	3 cut(s)	162, 240, 675
BstSLI	GKGCMC	1 cut(s)	901
BstV1I	GCAGC	5 cut(s)	226, 254, 683, 745, 1129
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	263
BsuRI	GGCC	3 cut(s)	473, 965, 985
BsuTUI	ATCGAT	1 cut(s)	263
BtrI	CACGTC	1 cut(s)	1014
BtsCI	GGATG	3 cut(s)	520, 634, 1121
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	4 cut(s)	181, 275, 558, 901
BveI	ACCTGC	1 cut(s)	932
Cac8I	GCNNGC	2 cut(s)	282, 354
CciI	TCATGA	1 cut(s)	847
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	472, 983
ClaI	ATCGAT	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	391, 758, 1049
CviAII	CATG	3 cut(s)	500, 614, 848
CviQI	GTAC	3 cut(s)	391, 758, 1049
DdeI	CTNAG	2 cut(s)	624, 1028
DpnI	GATC	4 cut(s)	266, 347, 435, 537
DpnII	GATC	4 cut(s)	264, 345, 433, 535
Eam1104I	CTCTTC	1 cut(s)	930
EarI	CTCTTC	1 cut(s)	930
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	721, 924
Eco147I	AGGCCT	1 cut(s)	965
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	721, 924
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	2 cut(s)	721, 924
Esp3I	CGTCTC	1 cut(s)	847
FaeI	CATG	3 cut(s)	503, 617, 851
FatI	CATG	3 cut(s)	499, 613, 847
Fnu4HI	GCNGC	5 cut(s)	240, 243, 672, 734, 1118
FokI	GGATG	3 cut(s)	527, 641, 1108
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	5 cut(s)	240, 243, 672, 734, 1118
FspBI	CTAG	2 cut(s)	804, 959
GluI	GCNGC	5 cut(s)	240, 243, 672, 734, 1118
GsaI	CCCAGC	1 cut(s)	1101
HaeIII	GGCC	3 cut(s)	473, 965, 985
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	3 cut(s)	503, 617, 851
HindIII	AAGCTT	3 cut(s)	350, 867, 973
HinfI	GANTC	4 cut(s)	260, 310, 647, 772
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	125, 220
Hpy188I	TCNGA	2 cut(s)	216, 702
Hpy188III	TCNNGA	6 cut(s)	140, 268, 419, 539, 848, 950
HpyAV	CCTTC	5 cut(s)	53, 146, 265, 592, 653
HpyCH4III	ACNGT	5 cut(s)	176, 562, 679, 749, 896
HpyCH4IV	ACGT	1 cut(s)	1013
HpyCH4V	TGCA	8 cut(s)	27, 50, 179, 191, 242, 356, 654, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 905
HpyF3I	CTNAG	2 cut(s)	624, 1028
HpySE526I	ACGT	1 cut(s)	1013
Hsp92II	CATG	3 cut(s)	503, 617, 851
KpnI	GGTACC	1 cut(s)	1052
Kzo9I	GATC	4 cut(s)	264, 345, 433, 535
LmnI	GCTCC	3 cut(s)	97, 610, 847
Lsp1109I	GCAGC	5 cut(s)	226, 254, 683, 745, 1129
LweI	GCATC	4 cut(s)	136, 195, 505, 619
MaeI	CTAG	2 cut(s)	804, 959
MaeII	ACGT	1 cut(s)	1013
MaeIII	GTNAC	8 cut(s)	72, 140, 182, 427, 508, 616, 679, 799
MalI	GATC	4 cut(s)	266, 347, 435, 537
MboI	GATC	4 cut(s)	264, 345, 433, 535
MboII	GAAGA	6 cut(s)	122, 146, 686, 689, 870, 947
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	4 cut(s)	102, 844, 901, 949
MluCI	AATT	3 cut(s)	412, 709, 742
MlyI	GAGTC	2 cut(s)	304, 656
MroXI	GAANNNNTTC	2 cut(s)	153, 1083
MseI	TTAA	4 cut(s)	575, 636, 762, 1044
MslI	CAYNNNNRTG	3 cut(s)	138, 1088, 1111
MspA1I	CMGCKG	4 cut(s)	239, 245, 595, 797
MspI	CCGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	281, 905
NdeII	GATC	4 cut(s)	264, 345, 433, 535
NlaIII	CATG	3 cut(s)	503, 617, 851
NlaIV	GGNNCC	2 cut(s)	403, 1050
NmuCI	GTSAC	3 cut(s)	140, 182, 616
NspI	RCATGY	1 cut(s)	617
OliI	CACNNNNGTG	1 cut(s)	138
PagI	TCATGA	1 cut(s)	847
PaqCI	CACCTGC	1 cut(s)	932
PceI	AGGCCT	1 cut(s)	965
PdmI	GAANNNNTTC	2 cut(s)	153, 1083
PfeI	GAWTC	2 cut(s)	260, 772
PkrI	GCNGC	5 cut(s)	241, 244, 673, 735, 1119
PleI	GAGTC	2 cut(s)	304, 655
PpsI	GAGTC	2 cut(s)	304, 655
Psp124BI	GAGCTC	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	1097
PspN4I	GGNNCC	2 cut(s)	403, 1050
PspPI	GGNCC	2 cut(s)	472, 983
PstI	CTGCAG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	433
PvuII	CAGCTG	4 cut(s)	239, 245, 595, 797
RsaI	GTAC	3 cut(s)	392, 759, 1050
RsaNI	GTAC	3 cut(s)	391, 758, 1049
RseI	CAYNNNNRTG	3 cut(s)	138, 1088, 1111
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	4 cut(s)	575, 636, 762, 1044
SatI	GCNGC	5 cut(s)	240, 243, 672, 734, 1118
Sau3AI	GATC	4 cut(s)	264, 345, 433, 535
Sau96I	GGNCC	2 cut(s)	472, 983
SchI	GAGTC	2 cut(s)	304, 656
SduI	GDGCHC	4 cut(s)	102, 844, 901, 949
SfaNI	GCATC	4 cut(s)	136, 195, 505, 619
SfcI	CTRYAG	3 cut(s)	162, 240, 675
SmiMI	CAYNNNNRTG	3 cut(s)	138, 1088, 1111
SmlI	CTYRAG	2 cut(s)	417, 461
SmoI	CTYRAG	2 cut(s)	417, 461
SpeI	ACTAGT	1 cut(s)	803
Sse9I	AATT	3 cut(s)	412, 709, 742
SseBI	AGGCCT	1 cut(s)	965
SspMI	CTAG	2 cut(s)	804, 959
SstI	GAGCTC	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	965
StyI	CCWWGG	2 cut(s)	721, 924
TaaI	ACNGT	5 cut(s)	176, 562, 679, 749, 896
TaiI	ACGT	1 cut(s)	1016
TaqI	TCGA	2 cut(s)	263, 1006
TasI	AATT	3 cut(s)	412, 709, 742
TatI	WGTACW	1 cut(s)	757
TfiI	GAWTC	2 cut(s)	260, 772
Tru1I	TTAA	4 cut(s)	575, 636, 762, 1044
Tru9I	TTAA	4 cut(s)	575, 636, 762, 1044
TscAI	CASTG	4 cut(s)	181, 282, 565, 901
TseFI	GTSAC	3 cut(s)	140, 182, 616
TseI	GCWGC	5 cut(s)	239, 242, 671, 733, 1117
Tsp45I	GTSAC	3 cut(s)	140, 182, 616
TspDTI	ATGAA	3 cut(s)	488, 541, 1029
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	4 cut(s)	181, 282, 565, 901
XapI	RAATTY	2 cut(s)	412, 709
XceI	RCATGY	1 cut(s)	617
XmnI	GAANNNNTTC	2 cut(s)	153, 1083
XspI	CTAG	2 cut(s)	804, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.