Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010110

Physical Location & Seq

Genomic Coordinates Forward (+)

44118742 .. 44126549

Gene Structure 7808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAGTTTGAGGGGTGGGTTTCTGGGCATAACAAAAGGAGAGGCATTTGGAATGATAAAGACTGGTGTGTTGCCGATCAAGGCAGTGAAGTTTCCCACTACAAAGTTTGAAGCGTCTAACCAGTTACAATACAAAGAAAGAAAGATGGAGCTCAATATAACACGCCCTGATGATTGGCATCTTCACCTTCGTGACGGTGAACTTCTTGAAGCTGTCGTCCCCCACAGTGCAACTCATTTTGGACGGGGAATAGTGATGCCAAATCTAAAGCCCCCTGTCACCACCACTGCTGCAGCTGTGGCTTACCGAGAATCTATCTTAAAAGCACTGCCTTCTGGTAGTGACTTCACTCCTCTTATGACACTTTATTTGACAGATACCACTAGTCCTAAAGAGATCAAGCTTGCAAGAAAAAGTGGGGTTGTATTTGCTGTAAAGCTTTACCCTGCTGGTGCCACAACAAATTCTCAAGATGGAGTTACGGATCTTTTTGGAAAATGCCTACCTGTCCTTGAGGAGATGGTTGAACAGAATATGCCTCTGCTGGTTCATGGGGAGGTTACAGATCCTGATGTTGATGTATTTGATCGTGAAAAGGTATTCATTGACTCTGTTTTACGACCTTTAATCAAAAGGCTTCCACAGCTGAAGGTCGTCATGGAGCATATAACTACTATGGATGCTGTTAAGTTTGTTGAGTCTTGCGAAGAAGGTTCTGTAGCAGCAACAGTTACTCCACAGCATCTTCTTCTGAATAGAAATGCTCTATTTCAAGGAGGATTACAGCCTCACAACTACTGTCTACCTGTACTCAAAAGGGAGATCCACAGACAGGCTATTGTATCAGCTGTTACTGGTGGAAGTAAAAGATTTTTTCTTGGAACTGATAGTGCTCCTCATGAAAAGCGGAGAAAAGAATGTCCTTGTGGTTGTGCTGGTATATACAGTGCCCCTGTTGCTCTATCATTGTATGCAAAGGTCTTTGAAGAGGCAGGTGCTCTTGACAAGCTAGAGGCATTTACAAGCTTTAATGGGCCGGACTTTTATGGCCTTCCTCGGAATACGTCAAAAACAAAGCTGAGCCGAACTTCATGGAAGGTACCAGAGTGCTTCTCATTTCCATTTGGAGACATCATACCAATGTTTGCAGGAGAAACGCTTGAGTGGCAGTCGTCCTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006207 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016810 GO:0016812 GO:0018130 GO:0019438 GO:0019637 GO:0019856 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Amidohydro_1

Protein Analysis

394

Amino Acids

43.51

Weight (kDa)

8.08

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidohydro_1	PF01979	58 - 354	1.9e-22	Amidohydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22930 AT4G22930
fragaria_vesca	FvH4_6g26410 FvH4_6g26410 FvH4_6g26410 FvH4_6g26410
malus_domestica	MD09G1233100.v1.1
prunus_persica	Prupe.3G131200_v2.0.a1
pyrus_communis	pycom09g16330
rosa_chinensis	RchiOBHm_Chr2g0127911
rosa_laevigata	RLG00000018930
rosa_multiflora	Rmu_ssc0000093.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116850
rosa_rugosa	Rorug02G0270300 Rorug02G0270300 Rorug02G0270400
rosa_samantha	Rh2AG322800 Rh2BG331700 Rh2CG310800 Rh2DG350300
rosa_wichuraiana	Rw2G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	983
Acc36I	ACCTGC	1 cut(s)	983
Acc65I	GGTACC	1 cut(s)	1099
AccB1I	GGYRCC	2 cut(s)	452, 1099
AccI	GTMKAC	1 cut(s)	802
AciI	CCGC	1 cut(s)	907
AclWI	GGATC	3 cut(s)	492, 560, 817
AcsI	RAATTY	1 cut(s)	463
AcuI	CTGAAG	1 cut(s)	668
AfaI	GTAC	2 cut(s)	810, 1101
AfiI	CCNNNNNNNGG	1 cut(s)	832
AgsI	TTSAA	6 cut(s)	110, 209, 527, 773, 986, 1180
AhlI	ACTAGT	1 cut(s)	383
AleI	CACNNNNGTG	1 cut(s)	189
Alw21I	GWGCWC	3 cut(s)	153, 895, 1000
Alw26I	GTCTC	1 cut(s)	1122
AlwI	GGATC	3 cut(s)	492, 560, 817
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	2 cut(s)	1034, 1048
ApeKI	GCWGC	3 cut(s)	290, 293, 722
ApoI	RAATTY	1 cut(s)	463
ArsI	GACNNNNNNTTYG	2 cut(s)	352, 384
Asp718I	GGTACC	1 cut(s)	1099
AspS9I	GGNCC	1 cut(s)	1034
AsuHPI	GGTGA	3 cut(s)	176, 209, 271
BaeGI	GKGCMC	1 cut(s)	952
BaeI	ACNNNNGTAYC	2 cut(s)	1091, 1124
BanI	GGYRCC	2 cut(s)	452, 1099
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	3 cut(s)	153, 895, 1000
BbvI	GCAGC	3 cut(s)	277, 305, 734
BccI	CCATC	3 cut(s)	139, 467, 514
BcoDI	GTCTC	1 cut(s)	1122
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	2 cut(s)	384, 1010
BfmI	CTRYAG	2 cut(s)	291, 717
BfuAI	ACCTGC	1 cut(s)	983
BisI	GCNGC	3 cut(s)	291, 294, 723
BlpI	GCTNAGC	1 cut(s)	1079
BlsI	GCNGC	3 cut(s)	292, 295, 724
BmgT120I	GGNCC	1 cut(s)	1034
BmiI	GGNNCC	2 cut(s)	454, 1101
BmsI	GCATC	4 cut(s)	187, 246, 670, 751
BplI	GAGNNNNNCTC	2 cut(s)	1097, 1129
Bpu1102I	GCTNAGC	1 cut(s)	1079
BpuEI	CTTGAG	3 cut(s)	453, 533, 1181
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	1055
BsaXI	ACNNNNNCTCC	2 cut(s)	718, 748
Bsc4I	CCNNNNNNNGG	1 cut(s)	832
Bse1I	ACTGG	3 cut(s)	67, 121, 859
Bse8I	GATNNNNATC	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	1055
BseGI	GGATG	1 cut(s)	685
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	832
BseMII	CTCAG	1 cut(s)	1070
BseNI	ACTGG	3 cut(s)	67, 121, 859
BseRI	GAGGAG	3 cut(s)	342, 530, 885
BseSI	GKGCMC	1 cut(s)	952
BseXI	GCAGC	3 cut(s)	277, 305, 734
BshFI	GGCC	2 cut(s)	1036, 1050
BshNI	GGYRCC	2 cut(s)	452, 1099
BsiHKAI	GWGCWC	3 cut(s)	153, 895, 1000
BsiSI	CCGG	1 cut(s)	1037
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	832
BsmAI	GTCTC	1 cut(s)	1122
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	1036, 1050
Bsp1286I	GDGCHC	4 cut(s)	153, 895, 952, 1000
Bsp143I	GATC	6 cut(s)	75, 396, 484, 565, 586, 822
Bsp1720I	GCTNAGC	1 cut(s)	1079
BspACI	CCGC	1 cut(s)	907
BspANI	GGCC	2 cut(s)	1036, 1050
BspCNI	CTCAG	1 cut(s)	1071
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	2 cut(s)	454, 1101
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	983
BspPI	GGATC	3 cut(s)	492, 560, 817
BspT107I	GGYRCC	2 cut(s)	452, 1099
BsrI	ACTGG	3 cut(s)	67, 121, 859
BssECI	CCNNGG	1 cut(s)	1055
BssMI	GATC	6 cut(s)	75, 396, 484, 565, 586, 822
Bst4CI	ACNGT	5 cut(s)	197, 227, 730, 800, 947
Bst6I	CTCTTC	1 cut(s)	981
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	1079
BstF5I	GGATG	1 cut(s)	685
BstKTI	GATC	6 cut(s)	78, 399, 487, 568, 589, 825
BstMAI	GTCTC	1 cut(s)	1122
BstMBI	GATC	6 cut(s)	75, 396, 484, 565, 586, 822
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 643, 956, 1165
BstSFI	CTRYAG	2 cut(s)	291, 717
BstSLI	GKGCMC	1 cut(s)	952
BstV1I	GCAGC	3 cut(s)	277, 305, 734
BstX2I	RGATCY	3 cut(s)	484, 565, 822
BstYI	RGATCY	3 cut(s)	484, 565, 822
BsuRI	GGCC	2 cut(s)	1036, 1050
BtsCI	GGATG	1 cut(s)	685
BtsI	GCAGTG	3 cut(s)	90, 285, 326
BtsIMutI	CAGTG	5 cut(s)	90, 232, 285, 326, 952
BveI	ACCTGC	1 cut(s)	983
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	569
CciI	TCATGA	1 cut(s)	898
Cfr13I	GGNCC	1 cut(s)	1034
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	809, 1100
CviAII	CATG	4 cut(s)	551, 658, 899, 1092
CviQI	GTAC	2 cut(s)	809, 1100
DdeI	CTNAG	1 cut(s)	1079
DpnI	GATC	6 cut(s)	77, 398, 486, 567, 588, 824
DpnII	GATC	6 cut(s)	75, 396, 484, 565, 586, 822
Eam1104I	CTCTTC	1 cut(s)	981
EarI	CTCTTC	1 cut(s)	981
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	668
EcoICRI	GAGCTC	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	4 cut(s)	554, 661, 902, 1095
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	4 cut(s)	550, 657, 898, 1091
FblI	GTMKAC	1 cut(s)	802
Fnu4HI	GCNGC	3 cut(s)	291, 294, 723
FokI	GGATG	1 cut(s)	692
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	3 cut(s)	291, 294, 723
FspBI	CTAG	2 cut(s)	384, 1010
GluI	GCNGC	3 cut(s)	291, 294, 723
HaeIII	GGCC	2 cut(s)	1036, 1050
HapII	CCGG	1 cut(s)	1037
HgaI	GACGC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	554, 661, 902, 1095
HindIII	AAGCTT	3 cut(s)	401, 437, 1024
HinfI	GANTC	3 cut(s)	311, 608, 698
HpaII	CCGG	1 cut(s)	1037
HphI	GGTGA	3 cut(s)	176, 209, 271
Hpy166II	GTNNAC	2 cut(s)	200, 803
Hpy188I	TCNGA	2 cut(s)	753, 1059
Hpy188III	TCNNGA	7 cut(s)	191, 206, 470, 569, 590, 899, 1001
Hpy8I	GTNNAC	2 cut(s)	200, 803
HpyAV	CCTTC	6 cut(s)	197, 342, 643, 704, 1061, 1090
HpyCH4III	ACNGT	5 cut(s)	197, 227, 730, 800, 947
HpyCH4IV	ACGT	1 cut(s)	1064
HpyCH4V	TGCA	5 cut(s)	230, 293, 407, 974, 1148
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 643, 956, 1165
HpyF3I	CTNAG	1 cut(s)	1079
HpySE526I	ACGT	1 cut(s)	1064
Hsp92II	CATG	4 cut(s)	554, 661, 902, 1095
KpnI	GGTACC	1 cut(s)	1103
Kzo9I	GATC	6 cut(s)	75, 396, 484, 565, 586, 822
LmnI	GCTCC	3 cut(s)	148, 661, 898
Lsp1109I	GCAGC	3 cut(s)	277, 305, 734
LweI	GCATC	4 cut(s)	187, 246, 670, 751
MaeI	CTAG	2 cut(s)	384, 1010
MaeII	ACGT	1 cut(s)	1064
MaeIII	GTNAC	8 cut(s)	123, 191, 277, 341, 478, 559, 730, 850
MalI	GATC	6 cut(s)	77, 398, 486, 567, 588, 824
MboI	GATC	6 cut(s)	75, 396, 484, 565, 586, 822
MboII	GAAGA	5 cut(s)	173, 719, 737, 740, 998
MflI	RGATCY	3 cut(s)	484, 565, 822
MhlI	GDGCHC	4 cut(s)	153, 895, 952, 1000
MluCI	AATT	1 cut(s)	463
MlyI	GAGTC	2 cut(s)	602, 707
MseI	TTAA	4 cut(s)	320, 626, 687, 1029
MslI	CAYNNNNRTG	2 cut(s)	189, 1139
MspA1I	CMGCKG	3 cut(s)	296, 646, 848
MspI	CCGG	1 cut(s)	1037
MwoI	GCNNNNNNNGC	4 cut(s)	299, 643, 956, 1165
NdeII	GATC	6 cut(s)	75, 396, 484, 565, 586, 822
NlaIII	CATG	4 cut(s)	554, 661, 902, 1095
NlaIV	GGNNCC	2 cut(s)	454, 1101
NmuCI	GTSAC	3 cut(s)	191, 277, 341
OliI	CACNNNNGTG	1 cut(s)	189
PagI	TCATGA	1 cut(s)	898
PaqCI	CACCTGC	1 cut(s)	983
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	3 cut(s)	292, 295, 724
PleI	GAGTC	2 cut(s)	602, 706
PpsI	GAGTC	2 cut(s)	602, 706
Psp124BI	GAGCTC	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	454, 1101
PspPI	GGNCC	1 cut(s)	1034
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	3 cut(s)	484, 565, 822
PvuII	CAGCTG	3 cut(s)	296, 646, 848
RsaI	GTAC	2 cut(s)	810, 1101
RsaNI	GTAC	2 cut(s)	809, 1100
RseI	CAYNNNNRTG	2 cut(s)	189, 1139
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	4 cut(s)	320, 626, 687, 1029
SatI	GCNGC	3 cut(s)	291, 294, 723
Sau3AI	GATC	6 cut(s)	75, 396, 484, 565, 586, 822
Sau96I	GGNCC	1 cut(s)	1034
SchI	GAGTC	2 cut(s)	602, 707
SduI	GDGCHC	4 cut(s)	153, 895, 952, 1000
SfaNI	GCATC	4 cut(s)	187, 246, 670, 751
SfcI	CTRYAG	2 cut(s)	291, 717
SmiMI	CAYNNNNRTG	2 cut(s)	189, 1139
SmlI	CTYRAG	3 cut(s)	468, 512, 1160
SmoI	CTYRAG	3 cut(s)	468, 512, 1160
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	1 cut(s)	907
SspMI	CTAG	2 cut(s)	384, 1010
SstI	GAGCTC	1 cut(s)	153
TaaI	ACNGT	5 cut(s)	197, 227, 730, 800, 947
TaiI	ACGT	1 cut(s)	1067
TasI	AATT	1 cut(s)	463
TatI	WGTACW	1 cut(s)	808
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	4 cut(s)	320, 626, 687, 1029
Tru9I	TTAA	4 cut(s)	320, 626, 687, 1029
TscAI	CASTG	5 cut(s)	90, 232, 292, 333, 952
TseFI	GTSAC	3 cut(s)	191, 277, 341
TseI	GCWGC	3 cut(s)	290, 293, 722
Tsp45I	GTSAC	3 cut(s)	191, 277, 341
TspDTI	ATGAA	4 cut(s)	539, 592, 915, 1080
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	5 cut(s)	90, 232, 292, 333, 952
XapI	RAATTY	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	802
XspI	CTAG	2 cut(s)	384, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.