Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010110

Physical Location & Seq

Genomic Coordinates Forward (+)

16576185 .. 16580274

Gene Structure 4090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16330.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGATAAAGAGTTGGGTTTTGCCTTGCAAGGCGTTGAAGTTTCCCTCATCAAATTTCGAAGGATCCAACAAGTTTCGGTGCAGAGGAGCCAAGATGGAGCTCACTATAACGCGCCCTGATGATTGGCACCTTCACCTTCGTGATGGTGAACTTCTGCAGGCTGTAGTCCCGCACAGTGCAAGTCATTTTGGAAGAGCAATTGTGATGCCTAATCTGAAACCTCCCATCACCACCACGGCTGCAGCTGTGGCTTATCGAGAATCCATCTTGAAAGCAATGCCTGCCGGTAGTGACTTCACACCACTTATGACCCTTTATTTGACTGATACCACAGAACCTAACGAGATCAAGCTCGCAAGAAGAAGTGGGGTTGTTTATGCTGTGAAGTTGTACCCTGCTGGTGCCACAACAAACTCTCAAGATGGGGTTACAGATCTCTTTGGAAGATGCCTACCTGTCCTTGAGGAGATGGCTGAACAGAATATACCTCTGCTGGTTCATGGGGAGGTTACAGATCCTGATATTGATGTATTTGATCGTGAAGGGGTCTTCATTGACACTGTTTTACGACCATTAATCCAAAGGCTTCCACAGCTAAAGGTCGTGATGGAGCATATCACTACCATGGATGCAGTTAAGTTTGTAGAGTCTTGTGAAGAAGGTTCTGTAGCTGCAACTGTTACTCCACAGCATCTTCTTCTAAATAGAAACTCTCTTTTCCAAGGAGGATTGCAGCCTCATAATTACTGTTTACCTGTACTCAAGAGAGAAATCCACAGACAGGCAATTGTGTCTGCTGTTACTAGTGGAAGTAAAAGATTTTTCATTGGAACTGATAGTGCTCCTCATGGGAGACGTAGAAAAGAAAGTTCTTGTGGATGTGCTGGTATATACAGTGCCCCTGTTGCTTTATCATTATACGCCAAGGTCTTTGAAGAGGCAGGTGCTATTGACAAGCTAGAAGCCTTTTTAAGCTTCAATGGCCCAGACTTCTATGGGCTTCCTCGAAACACGTCAAAGATAAAGCTGATCAAGAATTCATTCAACGTACCGGAGTGCTTCTCATTTCCGTTTGGAGACATTGTTCCGATGTTTGCTGGAGAAACACTTGAATGGCAGTCATCCATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006207 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016810 GO:0016812 GO:0018130 GO:0019438 GO:0019637 GO:0019856 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Amidohydro_1

Protein Analysis

378

Amino Acids

41.64

Weight (kDa)

6.8

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22930 AT4G22930
fragaria_vesca	FvH4_6g26410 FvH4_6g26410 FvH4_6g26410 FvH4_6g26410
malus_domestica	MD09G1233100.v1.1
prunus_persica	Prupe.3G131200_v2.0.a1
pyrus_communis	pycom09g16330
rosa_chinensis	RchiOBHm_Chr2g0127911
rosa_laevigata	RLG00000018930
rosa_multiflora	Rmu_ssc0000093.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116850
rosa_rugosa	Rorug02G0270300 Rorug02G0270300 Rorug02G0270400
rosa_samantha	Rh2AG322800 Rh2BG331700 Rh2CG310800 Rh2DG350300
rosa_wichuraiana	Rw2G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	932
Acc36I	ACCTGC	1 cut(s)	932
AccB1I	GGYRCC	2 cut(s)	126, 401
AccII	CGCG	1 cut(s)	112
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	3 cut(s)	57, 70, 509
AcsI	RAATTY	2 cut(s)	52, 1036
AfaI	GTAC	3 cut(s)	392, 759, 1050
AfiI	CCNNNNNNNGG	1 cut(s)	781
AflIII	ACRYGT	1 cut(s)	1011
AgsI	TTSAA	6 cut(s)	37, 271, 935, 979, 1045, 1112
AhlI	ACTAGT	1 cut(s)	803
AjiI	CACGTC	1 cut(s)	1014
AleI	CACNNNNGTG	1 cut(s)	138
AloI	GAACNNNNNNTCC	2 cut(s)	1068, 1100
AluBI	AGCT	8 cut(s)	100, 245, 352, 595, 671, 958, 975, 1027
AluI	AGCT	8 cut(s)	100, 245, 352, 595, 671, 958, 975, 1027
Alw21I	GWGCWC	2 cut(s)	102, 844
Alw26I	GTCTC	2 cut(s)	847, 1071
AlwI	GGATC	3 cut(s)	57, 70, 509
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	1 cut(s)	982
ApeKI	GCWGC	4 cut(s)	239, 242, 671, 733
ApoI	RAATTY	2 cut(s)	52, 1036
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
AseI	ATTAAT	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	1040
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	983
AsuHPI	GGTGA	3 cut(s)	125, 158, 220
AsuII	TTCGAA	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	901
BamHI	GGATCC	1 cut(s)	62
BanI	GGYRCC	2 cut(s)	126, 401
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	541
Bbv12I	GWGCWC	2 cut(s)	102, 844
BbvI	GCAGC	4 cut(s)	226, 254, 658, 745
BccI	CCATC	8 cut(s)	88, 137, 233, 272, 416, 463, 601, 1133
BceAI	ACGGC	1 cut(s)	252
BclI	TGATCA	1 cut(s)	1029
BcoDI	GTCTC	2 cut(s)	847, 1071
BcuI	ACTAGT	1 cut(s)	803
BfaI	CTAG	2 cut(s)	804, 959
BfmI	CTRYAG	4 cut(s)	155, 162, 240, 666
BfuAI	ACCTGC	1 cut(s)	932
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	4 cut(s)	240, 243, 672, 734
BlsI	GCNGC	4 cut(s)	241, 244, 673, 735
BmgBI	CACGTC	1 cut(s)	1014
BmgT120I	GGNCC	1 cut(s)	983
BmiI	GGNNCC	4 cut(s)	64, 88, 128, 403
BmsI	GCATC	4 cut(s)	195, 437, 619, 700
BpiI	GAAGAC	1 cut(s)	541
BplI	GAGNNNNNCTC	2 cut(s)	1046, 1078
BpmI	CTGGAG	1 cut(s)	1119
Bpu14I	TTCGAA	1 cut(s)	57
BpuEI	CTTGAG	3 cut(s)	402, 482, 746
BsaJI	CCNNGG	4 cut(s)	234, 624, 721, 924
BsaWI	WCCGGW	1 cut(s)	1051
BsaXI	ACNNNNNCTCC	4 cut(s)	667, 697, 1068, 1098
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse118I	RCCGGY	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	4 cut(s)	234, 624, 721, 924
BseGI	GGATG	3 cut(s)	634, 884, 1121
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseMI	GCAATG	1 cut(s)	282
BseRI	GAGGAG	3 cut(s)	99, 479, 834
BseSI	GKGCMC	1 cut(s)	901
BseXI	GCAGC	4 cut(s)	226, 254, 658, 745
BsgI	GTGCAG	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	984
BshNI	GGYRCC	2 cut(s)	126, 401
BsiHKAI	GWGCWC	2 cut(s)	102, 844
BsiSI	CCGG	2 cut(s)	285, 1052
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	781
BsmAI	GTCTC	2 cut(s)	847, 1071
BsmBI	CGTCTC	1 cut(s)	847
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	984
Bsp119I	TTCGAA	1 cut(s)	57
Bsp1286I	GDGCHC	3 cut(s)	102, 844, 901
Bsp143I	GATC	6 cut(s)	62, 345, 433, 514, 535, 1029
Bsp19I	CCATGG	1 cut(s)	624
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	984
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	4 cut(s)	64, 88, 128, 403
BspMAI	CTGCAG	2 cut(s)	159, 244
BspMI	ACCTGC	1 cut(s)	932
BspPI	GGATC	3 cut(s)	57, 70, 509
BspQI	GCTCTTC	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	57
BspT107I	GGYRCC	2 cut(s)	126, 401
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	4 cut(s)	234, 624, 721, 924
BssMI	GATC	6 cut(s)	62, 345, 433, 514, 535, 1029
BssT1I	CCWWGG	3 cut(s)	624, 721, 924
Bst4CI	ACNGT	5 cut(s)	176, 562, 679, 749, 896
Bst6I	CTCTTC	2 cut(s)	187, 930
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	159, 282, 354
BstDSI	CCRYGG	2 cut(s)	234, 624
BstF5I	GGATG	3 cut(s)	634, 884, 1121
BstFNI	CGCG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	6 cut(s)	65, 348, 436, 517, 538, 1032
BstMAI	GTCTC	2 cut(s)	847, 1071
BstMBI	GATC	6 cut(s)	62, 345, 433, 514, 535, 1029
BstMWI	GCNNNNNNNGC	5 cut(s)	248, 281, 592, 905, 981
BstSFI	CTRYAG	4 cut(s)	155, 162, 240, 666
BstSLI	GKGCMC	1 cut(s)	901
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	4 cut(s)	226, 254, 658, 745
BstV2I	GAAGAC	1 cut(s)	541
BstX2I	RGATCY	3 cut(s)	62, 433, 514
BstYI	RGATCY	3 cut(s)	62, 433, 514
BsuRI	GGCC	1 cut(s)	984
BtgI	CCRYGG	2 cut(s)	234, 624
BtrI	CACGTC	1 cut(s)	1014
BtsCI	GGATG	3 cut(s)	634, 884, 1121
BtsIMutI	CAGTG	3 cut(s)	181, 558, 901
BveI	ACCTGC	1 cut(s)	932
Cac8I	GCNNGC	3 cut(s)	159, 282, 354
CaiI	CAGNNNCTG	1 cut(s)	518
CfoI	GCGC	1 cut(s)	114
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	983
Csp6I	GTAC	3 cut(s)	391, 758, 1049
CviAII	CATG	3 cut(s)	500, 625, 848
CviQI	GTAC	3 cut(s)	391, 758, 1049
DpnI	GATC	6 cut(s)	64, 347, 435, 516, 537, 1031
DpnII	GATC	6 cut(s)	62, 345, 433, 514, 535, 1029
Eam1104I	CTCTTC	2 cut(s)	187, 930
EarI	CTCTTC	2 cut(s)	187, 930
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	3 cut(s)	624, 721, 924
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	1036
EcoT14I	CCWWGG	3 cut(s)	624, 721, 924
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	3 cut(s)	624, 721, 924
Esp3I	CGTCTC	1 cut(s)	847
FaeI	CATG	3 cut(s)	503, 628, 851
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	3 cut(s)	499, 624, 847
FauI	CCCGC	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	1029
Fnu4HI	GCNGC	4 cut(s)	240, 243, 672, 734
FokI	GGATG	3 cut(s)	641, 891, 1108
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	4 cut(s)	240, 243, 672, 734
FspBI	CTAG	2 cut(s)	804, 959
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	4 cut(s)	240, 243, 672, 734
GsuI	CTGGAG	1 cut(s)	1119
HaeIII	GGCC	1 cut(s)	984
HapII	CCGG	2 cut(s)	285, 1052
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	503, 628, 851
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	973
HinfI	GANTC	2 cut(s)	260, 647
HpaII	CCGG	2 cut(s)	285, 1052
HphI	GGTGA	3 cut(s)	125, 158, 220
Hpy166II	GTNNAC	2 cut(s)	149, 752
Hpy188I	TCNGA	2 cut(s)	216, 1089
Hpy188III	TCNNGA	9 cut(s)	140, 257, 268, 419, 518, 539, 604, 763, 1033
Hpy8I	GTNNAC	2 cut(s)	149, 752
HpyAV	CCTTC	5 cut(s)	53, 140, 146, 536, 653
HpyCH4III	ACNGT	5 cut(s)	176, 562, 679, 749, 896
HpyCH4IV	ACGT	3 cut(s)	856, 1013, 1047
HpyCH4V	TGCA	8 cut(s)	27, 81, 157, 179, 242, 632, 674, 733
HpyF10VI	GCNNNNNNNGC	5 cut(s)	248, 281, 592, 905, 981
HpySE526I	ACGT	3 cut(s)	856, 1013, 1047
Hsp92II	CATG	3 cut(s)	503, 628, 851
HspAI	GCGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	1029
Kzo9I	GATC	6 cut(s)	62, 345, 433, 514, 535, 1029
LguI	GCTCTTC	1 cut(s)	187
LmnI	GCTCC	4 cut(s)	86, 97, 610, 847
Lsp1109I	GCAGC	4 cut(s)	226, 254, 658, 745
LweI	GCATC	4 cut(s)	195, 437, 619, 700
MaeI	CTAG	2 cut(s)	804, 959
MaeII	ACGT	3 cut(s)	856, 1013, 1047
MaeIII	GTNAC	5 cut(s)	290, 427, 508, 679, 799
MalI	GATC	6 cut(s)	64, 347, 435, 516, 537, 1031
MboI	GATC	6 cut(s)	62, 345, 433, 514, 535, 1029
MboII	GAAGA	8 cut(s)	204, 372, 456, 541, 668, 686, 689, 947
MfeI	CAATTG	2 cut(s)	198, 786
MflI	RGATCY	3 cut(s)	62, 433, 514
MhlI	GDGCHC	3 cut(s)	102, 844, 901
MluCI	AATT	5 cut(s)	52, 198, 742, 786, 1036
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	1040
MseI	TTAA	3 cut(s)	575, 636, 971
MslI	CAYNNNNRTG	3 cut(s)	138, 623, 1111
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	2 cut(s)	285, 1052
MunI	CAATTG	2 cut(s)	198, 786
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	5 cut(s)	248, 281, 592, 905, 981
NcoI	CCATGG	1 cut(s)	624
NdeII	GATC	6 cut(s)	62, 345, 433, 514, 535, 1029
NlaIII	CATG	3 cut(s)	503, 628, 851
NlaIV	GGNNCC	4 cut(s)	64, 88, 128, 403
NmuCI	GTSAC	1 cut(s)	290
NspV	TTCGAA	1 cut(s)	57
OliI	CACNNNNGTG	1 cut(s)	138
PaqCI	CACCTGC	1 cut(s)	932
PciSI	GCTCTTC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	1040
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	241, 244, 673, 735
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PshBI	ATTAAT	1 cut(s)	575
Psp124BI	GAGCTC	1 cut(s)	102
PspN4I	GGNNCC	4 cut(s)	64, 88, 128, 403
PspPI	GGNCC	1 cut(s)	983
PsrI	GAACNNNNNNTAC	2 cut(s)	468, 500
PstI	CTGCAG	2 cut(s)	159, 244
PstNI	CAGNNNCTG	1 cut(s)	518
PsuI	RGATCY	3 cut(s)	62, 433, 514
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	3 cut(s)	392, 759, 1050
RsaNI	GTAC	3 cut(s)	391, 758, 1049
RseI	CAYNNNNRTG	3 cut(s)	138, 623, 1111
SacI	GAGCTC	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	575, 636, 971
SatI	GCNGC	4 cut(s)	240, 243, 672, 734
Sau3AI	GATC	6 cut(s)	62, 345, 433, 514, 535, 1029
Sau96I	GGNCC	1 cut(s)	983
SchI	GAGTC	1 cut(s)	656
SduI	GDGCHC	3 cut(s)	102, 844, 901
SfaNI	GCATC	4 cut(s)	195, 437, 619, 700
SfcI	CTRYAG	4 cut(s)	155, 162, 240, 666
SfuI	TTCGAA	1 cut(s)	57
SmiMI	CAYNNNNRTG	3 cut(s)	138, 623, 1111
SmlI	CTYRAG	3 cut(s)	417, 461, 761
SmoI	CTYRAG	3 cut(s)	417, 461, 761
SpeI	ACTAGT	1 cut(s)	803
Sse9I	AATT	5 cut(s)	52, 198, 742, 786, 1036
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	2 cut(s)	804, 959
SstI	GAGCTC	1 cut(s)	102
StyI	CCWWGG	3 cut(s)	624, 721, 924
TaaI	ACNGT	5 cut(s)	176, 562, 679, 749, 896
TaiI	ACGT	3 cut(s)	859, 1016, 1050
TaqI	TCGA	3 cut(s)	57, 256, 1006
TasI	AATT	5 cut(s)	52, 198, 742, 786, 1036
TatI	WGTACW	1 cut(s)	757
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	3 cut(s)	575, 636, 971
Tru9I	TTAA	3 cut(s)	575, 636, 971
TscAI	CASTG	3 cut(s)	181, 565, 901
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	4 cut(s)	239, 242, 671, 733
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	4 cut(s)	488, 541, 814, 1029
TspGWI	ACGGA	1 cut(s)	1059
TspRI	CASTG	3 cut(s)	181, 565, 901
VspI	ATTAAT	1 cut(s)	575
XapI	RAATTY	2 cut(s)	52, 1036
XmnI	GAANNNNTTC	1 cut(s)	1040
XspI	CTAG	2 cut(s)	804, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.