Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010110

Physical Location & Seq

Genomic Coordinates Reverse (-)

49047590 .. 49055018

Gene Structure 7429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG350300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAGCTCAATATAACACGCCCTGATGATTGGCATCTTCACCTTCGTGACGGTGAACTTCTTGAAGCTGTCGTCCCCCACAGTGCAACTCATTTTGGACGGGGAATAGTGATGCCAAATCTAAAGCCCCCTGTCACCACCACTGCTGCAGCTGTGGCTTACCAAGAATCTATCTTAAAAGCACTGCCTTCTGGTAGTGACTTCACTCCTCTTATGACACTTTATTTGACAGATACCACTAGTCCTAAAGAGATCAAGCTTGCAAGAAAAAGTGGGGTTGTATTTGCTGTAAAGCTCTACCCTGCTGGTGCCACAACAAATTCTCAAGATGGAGTTACAGATCTTTTTGGAAAATGCCTACCTGTCCTTGAGGAGATGGTTGAACAGAATATGCCTCTGCTGGTTCATGGGGAGGTTACAGATCCTGATGTTGATGTATTTGATCGTGAAAAGGTATTCATTGACTCTGTTTTACGACCTTTAATCAAAAGGCTTCCACAGCTGAAGGTCGTCATGGAGCATATAACTACTATGGATGCTGTTAAGTTTGTTGAGTCTTGCGAAGAAGGTTCTGTAGCAGCAACAGTTACTCCACAGCATCTTCTTCTGAATAGAAATGCTCTATTTCAAGGAGGATTACAGCCTCACAACTACTGTCTGCCTGTACTCAAAAGGGAGATCCACAGACAGGCTATTGTATCAGCTGTTACTGGTGGAAGTAAAAGATTTTTTCTTGGAACTGATAGTGCTCCTCATGAAAAGCGAAGAAAAGAATGTCCTTGTGGTTGTGCTGGTATATACAGTGCCCCCGTTGCTCTGTCATTGTATGCAAAGGTCTTTGAAGAGGTAAGGATTCTGGTATCTGCTCATGTTGGTTGGGATTCTTGTTTGCAGTCATATACACACAATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006207 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016810 GO:0016812 GO:0018130 GO:0019438 GO:0019637 GO:0019856 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Amidohydro_1

Protein Analysis

304

Amino Acids

33.49

Weight (kDa)

6.31

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidohydro_1	PF01979	10 - 303	9.9e-20	Amidohydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22930 AT4G22930
fragaria_vesca	FvH4_6g26410 FvH4_6g26410 FvH4_6g26410 FvH4_6g26410
malus_domestica	MD09G1233100.v1.1
prunus_persica	Prupe.3G131200_v2.0.a1
pyrus_communis	pycom09g16330
rosa_chinensis	RchiOBHm_Chr2g0127911
rosa_laevigata	RLG00000018930
rosa_multiflora	Rmu_ssc0000093.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116850
rosa_rugosa	Rorug02G0270300 Rorug02G0270300 Rorug02G0270400
rosa_samantha	Rh2AG322800 Rh2BG331700 Rh2CG310800 Rh2DG350300
rosa_wichuraiana	Rw2G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AclWI	GGATC	2 cut(s)	416, 673
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	524
AfaI	GTAC	1 cut(s)	666
AfiI	CCNNNNNNNGG	1 cut(s)	688
AgsI	TTSAA	4 cut(s)	65, 383, 629, 842
AhlI	ACTAGT	1 cut(s)	239
AleI	CACNNNNGTG	1 cut(s)	45
AluBI	AGCT	7 cut(s)	7, 68, 152, 259, 295, 502, 704
AluI	AGCT	7 cut(s)	7, 68, 152, 259, 295, 502, 704
Alw21I	GWGCWC	2 cut(s)	9, 751
AlwI	GGATC	2 cut(s)	416, 673
AlwNI	CAGNNNCTG	1 cut(s)	425
ApeKI	GCWGC	3 cut(s)	146, 149, 578
ApoI	RAATTY	1 cut(s)	319
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AsuHPI	GGTGA	3 cut(s)	32, 65, 127
BaeGI	GKGCMC	1 cut(s)	808
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	2 cut(s)	9, 751
BbvI	GCAGC	3 cut(s)	133, 161, 590
BccI	CCATC	2 cut(s)	323, 370
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	2 cut(s)	147, 573
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	3 cut(s)	147, 150, 579
BlsI	GCNGC	3 cut(s)	148, 151, 580
BmiI	GGNNCC	1 cut(s)	310
BmsI	GCATC	4 cut(s)	43, 102, 526, 607
BpuEI	CTTGAG	2 cut(s)	309, 389
BsaBI	GATNNNNATC	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	1 cut(s)	688
Bse1I	ACTGG	1 cut(s)	715
Bse8I	GATNNNNATC	1 cut(s)	33
BseGI	GGATG	1 cut(s)	541
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	688
BseNI	ACTGG	1 cut(s)	715
BseRI	GAGGAG	3 cut(s)	198, 386, 741
BseSI	GKGCMC	1 cut(s)	808
BseXI	GCAGC	3 cut(s)	133, 161, 590
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	2 cut(s)	9, 751
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	688
BsmFI	GGGAC	1 cut(s)	59
Bsp1286I	GDGCHC	3 cut(s)	9, 751, 808
Bsp143I	GATC	5 cut(s)	252, 340, 421, 442, 678
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	2 cut(s)	416, 673
BspT107I	GGYRCC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	715
BssMI	GATC	5 cut(s)	252, 340, 421, 442, 678
Bst4CI	ACNGT	5 cut(s)	53, 83, 586, 656, 803
Bst6I	CTCTTC	1 cut(s)	837
BstC8I	GCNNGC	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	541
BstKTI	GATC	5 cut(s)	255, 343, 424, 445, 681
BstMBI	GATC	5 cut(s)	252, 340, 421, 442, 678
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 499, 812
BstSFI	CTRYAG	2 cut(s)	147, 573
BstSLI	GKGCMC	1 cut(s)	808
BstV1I	GCAGC	3 cut(s)	133, 161, 590
BstX2I	RGATCY	3 cut(s)	340, 421, 678
BstYI	RGATCY	3 cut(s)	340, 421, 678
BtsCI	GGATG	1 cut(s)	541
BtsI	GCAGTG	2 cut(s)	141, 182
BtsIMutI	CAGTG	4 cut(s)	88, 141, 182, 808
Cac8I	GCNNGC	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	425
CciI	TCATGA	1 cut(s)	754
Csp6I	GTAC	1 cut(s)	665
CviAII	CATG	4 cut(s)	407, 514, 755, 869
CviQI	GTAC	1 cut(s)	665
DpnI	GATC	5 cut(s)	254, 342, 423, 444, 680
DpnII	GATC	5 cut(s)	252, 340, 421, 442, 678
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	524
EcoICRI	GAGCTC	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	4 cut(s)	410, 517, 758, 872
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	4 cut(s)	406, 513, 754, 868
Fnu4HI	GCNGC	3 cut(s)	147, 150, 579
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	147, 150, 579
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	3 cut(s)	147, 150, 579
Hin1II	CATG	4 cut(s)	410, 517, 758, 872
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	5 cut(s)	167, 464, 554, 853, 881
HphI	GGTGA	3 cut(s)	32, 65, 127
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	609
Hpy188III	TCNNGA	6 cut(s)	47, 62, 326, 425, 446, 755
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	53, 198, 499, 560
HpyCH4III	ACNGT	5 cut(s)	53, 83, 586, 656, 803
HpyCH4V	TGCA	5 cut(s)	86, 149, 263, 830, 892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 499, 812
Hsp92II	CATG	4 cut(s)	410, 517, 758, 872
Kzo9I	GATC	5 cut(s)	252, 340, 421, 442, 678
LmnI	GCTCC	3 cut(s)	4, 517, 754
Lsp1109I	GCAGC	3 cut(s)	133, 161, 590
LweI	GCATC	4 cut(s)	43, 102, 526, 607
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	7 cut(s)	47, 133, 197, 334, 415, 586, 706
MalI	GATC	5 cut(s)	254, 342, 423, 444, 680
MboI	GATC	5 cut(s)	252, 340, 421, 442, 678
MboII	GAAGA	6 cut(s)	29, 575, 593, 596, 777, 854
MflI	RGATCY	3 cut(s)	340, 421, 678
MhlI	GDGCHC	3 cut(s)	9, 751, 808
MluCI	AATT	1 cut(s)	319
MlyI	GAGTC	2 cut(s)	458, 563
MnlI	CCTC	8 cut(s)	219, 364, 405, 406, 626, 654, 762, 838
MseI	TTAA	3 cut(s)	176, 482, 543
MslI	CAYNNNNRTG	1 cut(s)	45
MspA1I	CMGCKG	3 cut(s)	152, 502, 704
MwoI	GCNNNNNNNGC	3 cut(s)	155, 499, 812
NdeII	GATC	5 cut(s)	252, 340, 421, 442, 678
NlaIII	CATG	4 cut(s)	410, 517, 758, 872
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	3 cut(s)	47, 133, 197
OliI	CACNNNNGTG	1 cut(s)	45
PagI	TCATGA	1 cut(s)	754
PfeI	GAWTC	3 cut(s)	167, 853, 881
PkrI	GCNGC	3 cut(s)	148, 151, 580
PleI	GAGTC	2 cut(s)	458, 562
PpsI	GAGTC	2 cut(s)	458, 562
Psp124BI	GAGCTC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	3 cut(s)	340, 421, 678
PvuII	CAGCTG	3 cut(s)	152, 502, 704
RsaI	GTAC	1 cut(s)	666
RsaNI	GTAC	1 cut(s)	665
RseI	CAYNNNNRTG	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	176, 482, 543
SatI	GCNGC	3 cut(s)	147, 150, 579
Sau3AI	GATC	5 cut(s)	252, 340, 421, 442, 678
SchI	GAGTC	2 cut(s)	458, 563
SduI	GDGCHC	3 cut(s)	9, 751, 808
SfaNI	GCATC	4 cut(s)	43, 102, 526, 607
SfcI	CTRYAG	2 cut(s)	147, 573
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	324, 368
SmoI	CTYRAG	2 cut(s)	324, 368
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	1 cut(s)	319
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	9
TaaI	ACNGT	5 cut(s)	53, 83, 586, 656, 803
TasI	AATT	1 cut(s)	319
TatI	WGTACW	1 cut(s)	664
TfiI	GAWTC	3 cut(s)	167, 853, 881
Tru1I	TTAA	3 cut(s)	176, 482, 543
Tru9I	TTAA	3 cut(s)	176, 482, 543
TscAI	CASTG	4 cut(s)	88, 148, 189, 808
TseFI	GTSAC	3 cut(s)	47, 133, 197
TseI	GCWGC	3 cut(s)	146, 149, 578
Tsp45I	GTSAC	3 cut(s)	47, 133, 197
TspDTI	ATGAA	3 cut(s)	395, 448, 771
TspRI	CASTG	4 cut(s)	88, 148, 189, 808
XapI	RAATTY	1 cut(s)	319
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.