Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010110

Physical Location & Seq

Genomic Coordinates Forward (+)

28675146 .. 28676283

Gene Structure 1138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0270400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGTTCATCAACCAGATCAAATGTATAAGTTTGGCCCTGATCCTCATGTTGGGGGCTTGGTCTTCTGAAGCCACTTCTCGCACTCTCCAAGATGTGTCAATGTATGGGAGATATGAGCAATGGATGGCTCATCATGGACGTGCTTATAGCAGCATTGATGAGAAGGAGAGTCGTTTCAAGATATTCAAAGAAAATGTGGCGTTTATAGAATCTTCCAATAACGATGCAAGCAAAACTTACAAATTAAGTGTCAATCAGTTTGCAGATCTAACAAACGAAGAATTCACAGCCTTGAGCAATGGATTCAAGGGGCATGAATGTTCCACAAAGACCACTTCCTTCAGGTATGGAAATGTCACAGTGCCAGCTACAATGGACTGGAGAAGCAAAGGAGCTGTCACTCCCATCAAGGATCAAGGTCAATGCGGATGCTGTTGGGCATTTTCGGCAGTGGCAGCAATGGAAGGCATTACTCAACTTACAACGGGTAAACTAATCTCGTTGTCTGAGCAAGAGCTAGTTGATTGTGACACCAGTGGTGAAGATCAAGGTTGTGAAGGTGGTTTGATGGATGATGCCTTTGAGTTTATCGATCAAAATCACGGGCTTAGTACCGAGGCAAATTATCCCTACACCGGTGTTGATGGAACATGCAATGCCCAGAAGGAAGCAAGTCATGCCGCCTCAATAACTGGCCATGAAGACGTTCCTGCAAACAGTGAAAGTGCCCTTCTTAAGGCCGTCGCAAGTCAACCTATTTCAGTTGCCATTGATGCTAGTGGATCTGATTTCCAATTCTATTCAAGTGGCGTCTTTACTGGTACCTGTGGAACAAGTTTAGACCATGGTGTTACAGCAGTTGGCTACGGTGTAAGTGATGATGGGACAAACTACTGGTTGGTGAAGAACTCATGGGGTACACAATGGGGTGAAGAAGGGTACATAAGGATGCAAAGGGATGTCGATGCAGCGGAAGGCCTTTGCGGCATTGCTATGGCAGCCTCTTACCCCACTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006207 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016810 GO:0016812 GO:0018130 GO:0019438 GO:0019637 GO:0019856 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Amidohydro_1

Protein Analysis

340

Amino Acids

36.71

Weight (kDa)

4.55

Isoelectric Point (pI)

18.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	39 - 96	8.1e-20	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	122 - 339	8e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22930 AT4G22930
fragaria_vesca	FvH4_6g26410 FvH4_6g26410 FvH4_6g26410 FvH4_6g26410
malus_domestica	MD09G1233100.v1.1
prunus_persica	Prupe.3G131200_v2.0.a1
pyrus_communis	pycom09g16330
rosa_chinensis	RchiOBHm_Chr2g0127911
rosa_laevigata	RLG00000018930
rosa_multiflora	Rmu_ssc0000093.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116850
rosa_rugosa	Rorug02G0270300 Rorug02G0270300 Rorug02G0270400
rosa_samantha	Rh2AG322800 Rh2BG331700 Rh2CG310800 Rh2DG350300
rosa_wichuraiana	Rw2G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	824
AccB1I	GGYRCC	1 cut(s)	824
AciI	CCGC	4 cut(s)	429, 684, 974, 987
AclWI	GGATC	3 cut(s)	37, 423, 793
AcoI	YGGCCR	1 cut(s)	697
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	2 cut(s)	90, 328
AcyI	GRCGYC	1 cut(s)	813
AfaI	GTAC	4 cut(s)	616, 826, 922, 944
AfiI	CCNNNNNNNGG	3 cut(s)	52, 638, 739
AflII	CTTAAG	1 cut(s)	737
AgeI	ACCGGT	1 cut(s)	638
AgsI	TTSAA	4 cut(s)	181, 190, 310, 807
AjiI	CACGTC	1 cut(s)	143
AluBI	AGCT	3 cut(s)	371, 398, 520
AluI	AGCT	3 cut(s)	371, 398, 520
AlwI	GGATC	3 cut(s)	37, 423, 793
AoxI	GGCC	4 cut(s)	36, 697, 741, 979
ApeKI	GCWGC	4 cut(s)	153, 458, 971, 1001
ApoI	RAATTY	1 cut(s)	284
ArsI	GACNNNNNNTTYG	4 cut(s)	237, 269, 384, 416
AsiGI	ACCGGT	1 cut(s)	638
Asp700I	GAANNNNTTC	1 cut(s)	708
Asp718I	GGTACC	1 cut(s)	824
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	3 cut(s)	554, 916, 944
BaeGI	GKGCMC	1 cut(s)	733
BalI	TGGCCA	1 cut(s)	699
BanI	GGYRCC	1 cut(s)	824
BbsI	GAAGAC	2 cut(s)	57, 711
BbvI	GCAGC	4 cut(s)	165, 470, 983, 1013
BccI	CCATC	5 cut(s)	121, 416, 565, 641, 878
BceAI	ACGGC	1 cut(s)	728
BfaI	CTAG	2 cut(s)	521, 780
BfrI	CTTAAG	1 cut(s)	737
BglI	GCCNNNNNGGC	1 cut(s)	987
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	6 cut(s)	154, 459, 684, 972, 988, 1002
BlsI	GCNGC	6 cut(s)	155, 460, 685, 973, 989, 1003
BmgBI	CACGTC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	826
BmsI	GCATC	6 cut(s)	217, 422, 568, 766, 942, 958
BpiI	GAAGAC	2 cut(s)	57, 711
BpmI	CTGGAG	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	316
Bsa29I	ATCGAT	1 cut(s)	594
BsaBI	GATNNNNATC	1 cut(s)	600
BsaHI	GRCGYC	1 cut(s)	813
BsaJI	CCNNGG	2 cut(s)	618, 847
BsaWI	WCCGGW	1 cut(s)	638
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 638, 739
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	5 cut(s)	386, 537, 700, 826, 902
Bse3DI	GCAATG	5 cut(s)	128, 307, 468, 664, 990
Bse8I	GATNNNNATC	1 cut(s)	600
BseCI	ATCGAT	1 cut(s)	594
BseDI	CCNNGG	2 cut(s)	618, 847
BseGI	GGATG	5 cut(s)	132, 437, 580, 957, 967
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	3 cut(s)	52, 638, 739
BseMI	GCAATG	5 cut(s)	128, 307, 468, 664, 990
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	5 cut(s)	386, 537, 700, 826, 902
BseSI	GKGCMC	1 cut(s)	733
BseXI	GCAGC	4 cut(s)	165, 470, 983, 1013
BshFI	GGCC	4 cut(s)	38, 699, 743, 981
BshNI	GGYRCC	1 cut(s)	824
BshTI	ACCGGT	1 cut(s)	638
BshVI	ATCGAT	1 cut(s)	594
BsiSI	CCGG	1 cut(s)	639
BslFI	GGGAC	1 cut(s)	901
BslI	CCNNNNNNNGG	3 cut(s)	52, 638, 739
BsmFI	GGGAC	1 cut(s)	901
BsnI	GGCC	4 cut(s)	38, 699, 743, 981
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp143I	GATC	7 cut(s)	18, 42, 268, 415, 547, 595, 785
Bsp19I	CCATGG	1 cut(s)	847
BspACI	CCGC	4 cut(s)	429, 684, 974, 987
BspANI	GGCC	4 cut(s)	38, 699, 743, 981
BspCNI	CTCAG	1 cut(s)	502
BspDI	ATCGAT	1 cut(s)	594
BspLI	GGNNCC	1 cut(s)	826
BspPI	GGATC	3 cut(s)	37, 423, 793
BspT107I	GGYRCC	1 cut(s)	824
BspTI	CTTAAG	1 cut(s)	737
BsrDI	GCAATG	5 cut(s)	128, 307, 468, 664, 990
BsrFI	RCCGGY	1 cut(s)	638
BsrI	ACTGG	5 cut(s)	386, 537, 700, 826, 902
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	2 cut(s)	618, 847
BssMI	GATC	7 cut(s)	18, 42, 268, 415, 547, 595, 785
BssNI	GRCGYC	1 cut(s)	813
BssT1I	CCWWGG	1 cut(s)	847
Bst4CI	ACNGT	3 cut(s)	364, 722, 872
BstACI	GRCGYC	1 cut(s)	813
BstAFI	CTTAAG	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstC8I	GCNNGC	2 cut(s)	232, 369
BstDEI	CTNAG	2 cut(s)	510, 611
BstDSI	CCRYGG	1 cut(s)	847
BstENI	CCTNNNNNAGG	1 cut(s)	737
BstF5I	GGATG	5 cut(s)	132, 437, 580, 957, 967
BstKTI	GATC	7 cut(s)	21, 45, 271, 418, 550, 598, 788
BstMBI	GATC	7 cut(s)	18, 42, 268, 415, 547, 595, 785
BstMWI	GCNNNNNNNGC	6 cut(s)	449, 458, 680, 776, 987, 1001
BstNSI	RCATGY	1 cut(s)	657
BstSLI	GKGCMC	1 cut(s)	733
BstV1I	GCAGC	4 cut(s)	165, 470, 983, 1013
BstV2I	GAAGAC	2 cut(s)	57, 711
BstX2I	RGATCY	2 cut(s)	268, 785
BstYI	RGATCY	2 cut(s)	268, 785
Bsu15I	ATCGAT	1 cut(s)	594
BsuRI	GGCC	4 cut(s)	38, 699, 743, 981
BsuTUI	ATCGAT	1 cut(s)	594
BtgI	CCRYGG	1 cut(s)	847
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	5 cut(s)	132, 437, 580, 957, 967
BtsI	GCAGTG	2 cut(s)	459, 1014
BtsIMutI	CAGTG	5 cut(s)	369, 459, 544, 727, 1014
Cac8I	GCNNGC	2 cut(s)	232, 369
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	594
CseI	GACGC	1 cut(s)	802
Csp6I	GTAC	4 cut(s)	615, 825, 921, 943
CspAI	ACCGGT	1 cut(s)	638
CviAII	CATG	8 cut(s)	49, 137, 317, 654, 680, 701, 848, 915
CviQI	GTAC	4 cut(s)	615, 825, 921, 943
DdeI	CTNAG	2 cut(s)	510, 611
DpnI	GATC	7 cut(s)	20, 44, 270, 417, 549, 597, 787
DpnII	GATC	7 cut(s)	18, 42, 268, 415, 547, 595, 785
EaeI	YGGCCR	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	847
Eco147I	AGGCCT	1 cut(s)	981
Eco57I	CTGAAG	2 cut(s)	90, 328
EcoNI	CCTNNNNNAGG	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	847
ErhI	CCWWGG	1 cut(s)	847
FaeI	CATG	8 cut(s)	52, 140, 320, 657, 683, 704, 851, 918
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FaqI	GGGAC	1 cut(s)	901
FatI	CATG	8 cut(s)	48, 136, 316, 653, 679, 700, 847, 914
Fnu4HI	GCNGC	6 cut(s)	154, 459, 684, 972, 988, 1002
FokI	GGATG	5 cut(s)	139, 444, 587, 964, 974
Fsp4HI	GCNGC	6 cut(s)	154, 459, 684, 972, 988, 1002
FspBI	CTAG	2 cut(s)	521, 780
GluI	GCNGC	6 cut(s)	154, 459, 684, 972, 988, 1002
GsuI	CTGGAG	1 cut(s)	403
HaeIII	GGCC	4 cut(s)	38, 699, 743, 981
HapII	CCGG	1 cut(s)	639
HgaI	GACGC	1 cut(s)	802
Hin1I	GRCGYC	1 cut(s)	813
Hin1II	CATG	8 cut(s)	52, 140, 320, 657, 683, 704, 851, 918
HincII	GTYRAC	1 cut(s)	755
HindII	GTYRAC	1 cut(s)	755
HinfI	GANTC	3 cut(s)	172, 212, 306
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	3 cut(s)	554, 916, 944
Hpy166II	GTNNAC	3 cut(s)	494, 755, 923
Hpy188I	TCNGA	3 cut(s)	70, 511, 790
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	3 cut(s)	494, 755, 923
Hpy99I	CGWCG	1 cut(s)	749
HpyAV	CCTTC	8 cut(s)	160, 352, 461, 554, 661, 743, 932, 971
HpyCH4III	ACNGT	3 cut(s)	364, 722, 872
HpyCH4IV	ACGT	2 cut(s)	142, 708
HpyCH4V	TGCA	7 cut(s)	230, 266, 657, 716, 955, 971, 1019
HpyF10VI	GCNNNNNNNGC	6 cut(s)	449, 458, 680, 776, 987, 1001
HpyF3I	CTNAG	2 cut(s)	510, 611
HpySE526I	ACGT	2 cut(s)	142, 708
Hsp92I	GRCGYC	1 cut(s)	813
Hsp92II	CATG	8 cut(s)	52, 140, 320, 657, 683, 704, 851, 918
KpnI	GGTACC	1 cut(s)	828
Kzo9I	GATC	7 cut(s)	18, 42, 268, 415, 547, 595, 785
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	4 cut(s)	165, 470, 983, 1013
LweI	GCATC	6 cut(s)	217, 422, 568, 766, 942, 958
MaeI	CTAG	2 cut(s)	521, 780
MaeII	ACGT	2 cut(s)	142, 708
MaeIII	GTNAC	4 cut(s)	358, 400, 530, 853
MalI	GATC	7 cut(s)	20, 44, 270, 417, 549, 597, 787
MboI	GATC	7 cut(s)	18, 42, 268, 415, 547, 595, 785
MboII	GAAGA	7 cut(s)	57, 207, 293, 557, 716, 919, 947
MflI	RGATCY	2 cut(s)	268, 785
MhlI	GDGCHC	1 cut(s)	733
MlsI	TGGCCA	1 cut(s)	699
MluCI	AATT	4 cut(s)	245, 284, 625, 797
MluNI	TGGCCA	1 cut(s)	699
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	56, 613, 697, 1015
Mox20I	TGGCCA	1 cut(s)	699
MroXI	GAANNNNTTC	1 cut(s)	708
MscI	TGGCCA	1 cut(s)	699
MseI	TTAA	2 cut(s)	248, 738
MslI	CAYNNNNRTG	3 cut(s)	141, 950, 995
Msp20I	TGGCCA	1 cut(s)	699
MspA1I	CMGCKG	1 cut(s)	974
MspCI	CTTAAG	1 cut(s)	737
MspI	CCGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	6 cut(s)	449, 458, 680, 776, 987, 1001
NcoI	CCATGG	1 cut(s)	847
NdeII	GATC	7 cut(s)	18, 42, 268, 415, 547, 595, 785
NlaIII	CATG	8 cut(s)	52, 140, 320, 657, 683, 704, 851, 918
NlaIV	GGNNCC	1 cut(s)	826
NmuCI	GTSAC	3 cut(s)	358, 400, 530
NspI	RCATGY	1 cut(s)	657
PceI	AGGCCT	1 cut(s)	981
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	212, 306
PinAI	ACCGGT	1 cut(s)	638
PkrI	GCNGC	6 cut(s)	155, 460, 685, 973, 989, 1003
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	826
PspPI	GGNCC	1 cut(s)	37
PsuI	RGATCY	2 cut(s)	268, 785
RsaI	GTAC	4 cut(s)	616, 826, 922, 944
RsaNI	GTAC	4 cut(s)	615, 825, 921, 943
RseI	CAYNNNNRTG	3 cut(s)	141, 950, 995
SaqAI	TTAA	2 cut(s)	248, 738
SatI	GCNGC	6 cut(s)	154, 459, 684, 972, 988, 1002
Sau3AI	GATC	7 cut(s)	18, 42, 268, 415, 547, 595, 785
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	6 cut(s)	217, 422, 568, 766, 942, 958
SgrAI	CRCCGGYG	1 cut(s)	638
SmiMI	CAYNNNNRTG	3 cut(s)	141, 950, 995
SmlI	CTYRAG	2 cut(s)	295, 737
SmoI	CTYRAG	2 cut(s)	295, 737
Sse9I	AATT	4 cut(s)	245, 284, 625, 797
SseBI	AGGCCT	1 cut(s)	981
SsiI	CCGC	4 cut(s)	429, 684, 974, 987
SspMI	CTAG	2 cut(s)	521, 780
StuI	AGGCCT	1 cut(s)	981
StyI	CCWWGG	1 cut(s)	847
TaaI	ACNGT	3 cut(s)	364, 722, 872
TaiI	ACGT	2 cut(s)	145, 711
TaqI	TCGA	2 cut(s)	594, 966
TasI	AATT	4 cut(s)	245, 284, 625, 797
TauI	GCSGC	2 cut(s)	686, 990
TfiI	GAWTC	2 cut(s)	212, 306
Tru1I	TTAA	2 cut(s)	248, 738
Tru9I	TTAA	2 cut(s)	248, 738
TscAI	CASTG	5 cut(s)	369, 459, 544, 727, 1021
TseFI	GTSAC	3 cut(s)	358, 400, 530
TseI	GCWGC	4 cut(s)	153, 458, 971, 1001
Tsp45I	GTSAC	3 cut(s)	358, 400, 530
TspDTI	ATGAA	2 cut(s)	333, 717
TspRI	CASTG	5 cut(s)	369, 459, 544, 727, 1021
Vha464I	CTTAAG	1 cut(s)	737
XagI	CCTNNNNNAGG	1 cut(s)	737
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	1 cut(s)	657
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	2 cut(s)	521, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.