AT4G24180

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010716
Physical Location & Seq
Reverse (-)
12549700 .. 12551378
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24180.2

Sequence Viewer

Length: 945 bp
ATGATCATAACAGTCCTTCATTCTCATGTCTCATTCTATTTCATCATCCTTAGCTTCCTCTTCTTCCATGCATTGCATTTGGTAGGAAGTGATGGTGCTACAATAACCATCGTAAATCGATGCAGCTTCACCGTGTGGCCGGGAATTTTGTCCAACTCCGGAAGCGGCGATATAGGCACCACCGGCTTCGAGCTCGTTCCCGGTGGTTCACGTTCGTTCCAAGCTCCAGCTAGCTGGTCAGGTCGGTTTTGGGCACGAACCGGTTGCAACTTCAACTCAGACACAGGACAAGGCACCTGCCTAACCGGGGACTGCGGCTCTAACCAGGTCGAATGTAACGGTGCAGGAGCAAAACCGCCCGCTACACTCGCCGAATTCACAATCGGGTCAGGTCCAGCAGACCCGGCCCGTAAACAAGACTTCTACGACGTAAGCCTCGTGGACGGTTACAACGTTCCCATGTTGGTGGAAGCAAGTGGCGGGTCAGAAGGTACTTGCTTAACCACGGGATGCGTAACGGATCTAAACCAAAAATGTCCAACGGAGCTCCGGTTCGGGTCCGGGTCAGCATGCAAAAGCGCGTGTGAGGCTTTTGGTAGTCCAGAATATTGTTGTAGTGGCGCGTACGCCTCACCCACCGAGTGTAAACCATCGATGTACTCGGAGATATTCAAATCTGCGTGTCCAAGATCATATAGCTACGCGTTCGACGATGCTACAAGTACGTTCACATGCACTGATGCTGATTACACCATCACTTTTTGCCCTTCCTTGCCTAGCCAAAAATCGGCAGCGAATGGGTGGAGAGATGGCGGTGGATCAGTACAAACCTCACCGTCACCATTATCGACGTGGTTGTCCGATGTCTTCACCTCTGATTCCTCAAATGTTCAGTCTTCCCAATATTTACTCATCTTTACTATTTTTCTTCTTCTGCATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

314

Amino Acids

33.26

Weight (kDa)

4.73

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 34 - 251 3.9e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180
fragaria_vesca FvH4_2g38310
malus_domestica MD08G1011400.v1.1
prunus_persica Prupe.1G364000_v2.0.a1
pyrus_communis pycom08g01000
rosa_chinensis RchiOBHm_Chr6g0303061
rosa_laevigata RLG00000011112
rosa_multiflora Rmu_ssc0000460.1_g000033
rosa_roxburghii Rroxscaffold_7G00165070
rosa_rugosa Rorug06G0319100
rosa_samantha Rh6AG432600 Rh6BG470000 Rh6CG445000 Rh6DG431800
rosa_wichuraiana Rw6G037500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 305
AasI GACNNNNNNGTC 1 cut(s) 856
Acc36I ACCTGC 1 cut(s) 305
AccB1I GGYRCC 2 cut(s) 176, 293
AccII CGCG 3 cut(s) 581, 623, 704
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 6 cut(s) 165, 315, 356, 360, 480, 813
AclI AACGTT 1 cut(s) 453
AclWI GGATC 2 cut(s) 528, 826
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 2 cut(s) 144, 374
AdeI CACNNNGTG 2 cut(s) 135, 642
AfaI GTAC 5 cut(s) 493, 626, 659, 724, 825
AfiI CCNNNNNNNGG 2 cut(s) 307, 787
AflIII ACRYGT 1 cut(s) 702
AgeI ACCGGT 1 cut(s) 260
AgsI TTSAA 2 cut(s) 274, 673
AjiI CACGTC 1 cut(s) 852
AjnI CCWGG 1 cut(s) 324
AloI GAACNNNNNNTCC 2 cut(s) 536, 568
AluBI AGCT 8 cut(s) 54, 126, 193, 224, 230, 234, 547, 699
AluI AGCT 8 cut(s) 54, 126, 193, 224, 230, 234, 547, 699
Alw21I GWGCWC 2 cut(s) 195, 549
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 2 cut(s) 528, 826
Aor13HI TCCGGA 1 cut(s) 158
AoxI GGCC 2 cut(s) 137, 405
ApeKI GCWGC 2 cut(s) 123, 791
ApoI RAATTY 2 cut(s) 144, 374
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
AsiGI ACCGGT 1 cut(s) 260
AspLEI GCGC 2 cut(s) 581, 623
AspS9I GGNCC 3 cut(s) 392, 406, 558
AsuC2I CCSGG 5 cut(s) 141, 201, 307, 404, 562
AsuHPI GGTGA 5 cut(s) 121, 624, 825, 831, 862
AsuNHI GCTAGC 1 cut(s) 230
AvaII GGWCC 2 cut(s) 392, 558
BaeGI GKGCMC 1 cut(s) 256
BanI GGYRCC 2 cut(s) 176, 293
BanII GRGCYC 2 cut(s) 195, 549
BauI CACGAG 1 cut(s) 437
BbsI GAAGAC 2 cut(s) 859, 888
Bbv12I GWGCWC 2 cut(s) 195, 549
BbvI GCAGC 2 cut(s) 135, 803
BccI CCATC 5 cut(s) 86, 116, 658, 761, 803
BcgI CGANNNNNNTGC 2 cut(s) 246, 280
BciT130I CCWGG 1 cut(s) 326
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 5 cut(s) 141, 201, 307, 404, 562
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 2 cut(s) 231, 777
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 4 cut(s) 124, 166, 316, 792
BlsI GCNGC 4 cut(s) 125, 167, 317, 793
Bme1390I CCNGG 6 cut(s) 141, 201, 307, 326, 404, 562
Bme18I GGWCC 2 cut(s) 392, 558
BmgBI CACGTC 1 cut(s) 852
BmgT120I GGNCC 3 cut(s) 392, 406, 558
BmiI GGNNCC 3 cut(s) 178, 295, 559
BmrFI CCNGG 6 cut(s) 141, 201, 307, 326, 404, 562
BmsI GCATC 4 cut(s) 110, 500, 703, 730
BmtI GCTAGC 1 cut(s) 234
BpiI GAAGAC 2 cut(s) 859, 888
BpmI CTGGAG 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 50
BpuMI CCSGG 5 cut(s) 141, 201, 307, 404, 562
Bsa29I ATCGAT 2 cut(s) 118, 653
BsaJI CCNNGG 2 cut(s) 306, 504
BsaWI WCCGGW 3 cut(s) 158, 260, 549
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 787
Bse118I RCCGGY 2 cut(s) 182, 260
Bse3DI GCAATG 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 158
BseBI CCWGG 1 cut(s) 326
BseCI ATCGAT 2 cut(s) 118, 653
BseDI CCNNGG 2 cut(s) 306, 504
BseGI GGATG 2 cut(s) 45, 515
BseLI CCNNNNNNNGG 2 cut(s) 307, 787
BseMI GCAATG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 2 cut(s) 135, 803
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 3 cut(s) 581, 623, 704
BshFI GGCC 2 cut(s) 139, 407
BshNI GGYRCC 2 cut(s) 176, 293
BshTI ACCGGT 1 cut(s) 260
BshVI ATCGAT 2 cut(s) 118, 653
BsiHKAI GWGCWC 2 cut(s) 195, 549
BsiSI CCGG 9 cut(s) 140, 159, 183, 201, 261, 306, 404, 550, 561
BsiWI CGTACG 1 cut(s) 624
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 307, 787
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 2 cut(s) 139, 407
Bsp1286I GDGCHC 3 cut(s) 195, 256, 549
Bsp13I TCCGGA 1 cut(s) 158
Bsp143I GATC 4 cut(s) 3, 520, 689, 818
BspACI CCGC 6 cut(s) 165, 315, 356, 360, 480, 813
BspANI GGCC 2 cut(s) 139, 407
BspCNI CTCAG 1 cut(s) 290
BspDI ATCGAT 2 cut(s) 118, 653
BspEI TCCGGA 1 cut(s) 158
BspFNI CGCG 3 cut(s) 581, 623, 704
BspLI GGNNCC 3 cut(s) 178, 295, 559
BspMI ACCTGC 1 cut(s) 305
BspOI GCTAGC 1 cut(s) 234
BspPI GGATC 2 cut(s) 528, 826
BspT107I GGYRCC 2 cut(s) 176, 293
BsrDI GCAATG 1 cut(s) 71
BsrFI RCCGGY 2 cut(s) 182, 260
BssAI RCCGGY 2 cut(s) 182, 260
BssECI CCNNGG 2 cut(s) 306, 504
BssMI GATC 4 cut(s) 3, 520, 689, 818
BssSI CACGAG 1 cut(s) 437
Bst2BI CACGAG 1 cut(s) 437
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 5 cut(s) 13, 133, 341, 446, 837
Bst6I CTCTTC 1 cut(s) 65
BstC8I GCNNGC 3 cut(s) 232, 360, 571
BstDEI CTNAG 2 cut(s) 50, 277
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 2 cut(s) 45, 515
BstFNI CGCG 3 cut(s) 581, 623, 704
BstHHI GCGC 2 cut(s) 581, 623
BstKTI GATC 4 cut(s) 6, 523, 692, 821
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 4 cut(s) 3, 520, 689, 818
BstMWI GCNNNNNNNGC 5 cut(s) 174, 183, 368, 404, 587
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 2 cut(s) 573, 735
BstSCI CCNGG 6 cut(s) 139, 199, 305, 324, 402, 560
BstSLI GKGCMC 1 cut(s) 256
BstUI CGCG 3 cut(s) 581, 623, 704
BstV1I GCAGC 2 cut(s) 135, 803
BstV2I GAAGAC 2 cut(s) 859, 888
BstX2I RGATCY 1 cut(s) 520
BstXI CCANNNNNNTGG 2 cut(s) 234, 466
BstYI RGATCY 1 cut(s) 520
Bsu15I ATCGAT 2 cut(s) 118, 653
BsuRI GGCC 2 cut(s) 139, 407
BsuTUI ATCGAT 2 cut(s) 118, 653
BtgI CCRYGG 1 cut(s) 504
BtrI CACGTC 1 cut(s) 852
BtsCI GGATG 2 cut(s) 45, 515
BtsIMutI CAGTG 1 cut(s) 735
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 3 cut(s) 232, 360, 571
CfoI GCGC 2 cut(s) 581, 623
Cfr10I RCCGGY 2 cut(s) 182, 260
Cfr13I GGNCC 3 cut(s) 392, 406, 558
ClaI ATCGAT 2 cut(s) 118, 653
CsiI ACCWGGT 1 cut(s) 324
Csp6I GTAC 5 cut(s) 492, 625, 658, 723, 824
CspAI ACCGGT 1 cut(s) 260
CviAII CATG 5 cut(s) 26, 68, 460, 570, 732
CviQI GTAC 5 cut(s) 492, 625, 658, 723, 824
DdeI CTNAG 2 cut(s) 50, 277
DpnI GATC 4 cut(s) 5, 522, 691, 820
DpnII GATC 4 cut(s) 3, 520, 689, 818
DraIII CACNNNGTG 2 cut(s) 135, 642
DrdI GACNNNNNNGTC 1 cut(s) 856
DseDI GACNNNNNNGTC 1 cut(s) 856
EaeI YGGCCR 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Ecl136II GAGCTC 2 cut(s) 193, 547
Eco24I GRGCYC 2 cut(s) 195, 549
Eco47I GGWCC 2 cut(s) 392, 558
Eco53kI GAGCTC 2 cut(s) 193, 547
EcoICRI GAGCTC 2 cut(s) 193, 547
EcoRI GAATTC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 73
EcoT38I GRGCYC 2 cut(s) 195, 549
FaeI CATG 5 cut(s) 29, 71, 463, 573, 735
FaiI YATR 9 cut(s) 8, 27, 69, 173, 461, 571, 694, 696, 733
FaqI GGGAC 1 cut(s) 323
FatI CATG 5 cut(s) 25, 67, 459, 569, 731
FauI CCCGC 2 cut(s) 367, 473
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 124, 166, 316, 792
FokI GGATG 2 cut(s) 32, 522
FriOI GRGCYC 2 cut(s) 195, 549
Fsp4HI GCNGC 4 cut(s) 124, 166, 316, 792
FspBI CTAG 2 cut(s) 231, 777
GlaI GCGC 2 cut(s) 580, 622
GluI GCNGC 4 cut(s) 124, 166, 316, 792
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 139, 407
HapII CCGG 9 cut(s) 140, 159, 183, 201, 261, 306, 404, 550, 561
HhaI GCGC 2 cut(s) 581, 623
Hin1II CATG 5 cut(s) 29, 71, 463, 573, 735
Hin6I GCGC 2 cut(s) 579, 621
HinP1I GCGC 2 cut(s) 579, 621
HinfI GANTC 1 cut(s) 878
HpaII CCGG 9 cut(s) 140, 159, 183, 201, 261, 306, 404, 550, 561
HphI GGTGA 5 cut(s) 121, 624, 825, 831, 862
Hpy166II GTNNAC 5 cut(s) 209, 413, 442, 647, 729
Hpy188I TCNGA 5 cut(s) 280, 487, 664, 862, 877
Hpy188III TCNNGA 2 cut(s) 159, 602
Hpy8I GTNNAC 5 cut(s) 209, 413, 442, 647, 729
Hpy99I CGWCG 3 cut(s) 431, 713, 853
HpyAV CCTTC 3 cut(s) 26, 482, 777
HpyCH4III ACNGT 5 cut(s) 13, 133, 341, 446, 837
HpyCH4IV ACGT 5 cut(s) 211, 429, 453, 725, 851
HpyCH4V TGCA 8 cut(s) 71, 76, 123, 267, 344, 573, 735, 937
HpyF10VI GCNNNNNNNGC 5 cut(s) 174, 183, 368, 404, 587
HpyF3I CTNAG 2 cut(s) 50, 277
HpySE526I ACGT 5 cut(s) 211, 429, 453, 725, 851
Hsp92II CATG 5 cut(s) 29, 71, 463, 573, 735
HspAI GCGC 2 cut(s) 579, 621
Kpn2I TCCGGA 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 520, 689, 818
LmnI GCTCC 4 cut(s) 229, 347, 544, 552
Lsp1109I GCAGC 2 cut(s) 135, 803
LweI GCATC 4 cut(s) 110, 500, 703, 730
MabI ACCWGGT 1 cut(s) 324
MaeI CTAG 2 cut(s) 231, 777
MaeII ACGT 5 cut(s) 211, 429, 453, 725, 851
MaeIII GTNAC 4 cut(s) 335, 446, 514, 837
MalI GATC 4 cut(s) 5, 522, 691, 820
MboI GATC 4 cut(s) 3, 520, 689, 818
MboII GAAGA 6 cut(s) 52, 55, 859, 888, 920, 923
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 3 cut(s) 195, 256, 549
MluCI AATT 2 cut(s) 144, 374
MluI ACGCGT 1 cut(s) 702
MmeI TCCRAC 2 cut(s) 177, 563
MnlI CCTC 7 cut(s) 68, 446, 580, 640, 841, 883, 892
Mph1103I ATGCAT 1 cut(s) 73
MroI TCCGGA 1 cut(s) 158
MseI TTAA 1 cut(s) 500
MslI CAYNNNNRTG 2 cut(s) 24, 464
MspI CCGG 9 cut(s) 140, 159, 183, 201, 261, 306, 404, 550, 561
MspR9I CCNGG 6 cut(s) 141, 201, 307, 326, 404, 562
MvaI CCWGG 1 cut(s) 326
MvnI CGCG 3 cut(s) 581, 623, 704
MwoI GCNNNNNNNGC 5 cut(s) 174, 183, 368, 404, 587
NciI CCSGG 5 cut(s) 141, 201, 307, 404, 562
NdeII GATC 4 cut(s) 3, 520, 689, 818
NheI GCTAGC 1 cut(s) 230
NlaIII CATG 5 cut(s) 29, 71, 463, 573, 735
NlaIV GGNNCC 3 cut(s) 178, 295, 559
NmuCI GTSAC 1 cut(s) 837
NsiI ATGCAT 1 cut(s) 73
NspI RCATGY 2 cut(s) 573, 735
PaeI GCATGC 1 cut(s) 573
PaqCI CACCTGC 1 cut(s) 305
PcsI WCGNNNNNNNCGW 3 cut(s) 435, 450, 708
PfeI GAWTC 1 cut(s) 878
Pfl23II CGTACG 1 cut(s) 624
PinAI ACCGGT 1 cut(s) 260
PkrI GCNGC 4 cut(s) 125, 167, 317, 793
Psp124BI GAGCTC 2 cut(s) 195, 549
Psp1406I AACGTT 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspLI CGTACG 1 cut(s) 624
PspN4I GGNNCC 3 cut(s) 178, 295, 559
PspPI GGNCC 3 cut(s) 392, 406, 558
PsuI RGATCY 1 cut(s) 520
RsaI GTAC 5 cut(s) 493, 626, 659, 724, 825
RsaNI GTAC 5 cut(s) 492, 625, 658, 723, 824
RseI CAYNNNNRTG 2 cut(s) 24, 464
SacI GAGCTC 2 cut(s) 195, 549
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 4 cut(s) 124, 166, 316, 792
Sau3AI GATC 4 cut(s) 3, 520, 689, 818
Sau96I GGNCC 3 cut(s) 392, 406, 558
ScrFI CCNGG 6 cut(s) 141, 201, 307, 326, 404, 562
SduI GDGCHC 3 cut(s) 195, 256, 549
SexAI ACCWGGT 1 cut(s) 324
SfaNI GCATC 4 cut(s) 110, 500, 703, 730
SinI GGWCC 2 cut(s) 392, 558
SmiMI CAYNNNNRTG 2 cut(s) 24, 464
SphI GCATGC 1 cut(s) 573
Sse9I AATT 2 cut(s) 144, 374
SsiI CCGC 6 cut(s) 165, 315, 356, 360, 480, 813
SspI AATATT 2 cut(s) 608, 905
SspMI CTAG 2 cut(s) 231, 777
SstI GAGCTC 2 cut(s) 195, 549
StyD4I CCNGG 6 cut(s) 139, 199, 305, 324, 402, 560
TaaI ACNGT 5 cut(s) 13, 133, 341, 446, 837
TaiI ACGT 5 cut(s) 214, 432, 456, 728, 854
TaqI TCGA 6 cut(s) 118, 189, 330, 653, 708, 848
TasI AATT 2 cut(s) 144, 374
TatI WGTACW 2 cut(s) 657, 823
TauI GCSGC 2 cut(s) 168, 318
TfiI GAWTC 1 cut(s) 878
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TscAI CASTG 1 cut(s) 742
TseFI GTSAC 1 cut(s) 837
TseI GCWGC 2 cut(s) 123, 791
Tsp45I GTSAC 1 cut(s) 837
TspDTI ATGAA 2 cut(s) 8, 31
TspGWI ACGGA 2 cut(s) 533, 557
TspRI CASTG 1 cut(s) 742
VpaK11BI GGWCC 2 cut(s) 392, 558
XapI RAATTY 2 cut(s) 144, 374
XceI RCATGY 2 cut(s) 573, 735
XcmI CCANNNNNNNNNTGG 1 cut(s) 849
XspI CTAG 2 cut(s) 231, 777
Zsp2I ATGCAT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.