RLG00000011112

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010716
Physical Location & Seq
Reverse (-)
6902665 .. 6903765
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011112

Sequence Viewer

Length: 1101 bp
ATGTCGATCTTTCGTTGCCCTTTACAAATCATTCTCATTGTTTCGCTCATTAGTTTTCAAACCAGCGTTAATTCGACAACTTTTACATTCACAAACAGGTGCGATTACACAGTTTATCCCGGAACTCTAGCCGGTTCATCCAGCCCTAGACTAGAAAGCACCGGATTCCAGCTCCAACCAGGCGAGTCTCGCTCCCTTGAAGCCCCACCAAGCTGGTCAGGCAGGTTCTGGGGTCGAACAGGTTGCAACTTCGACCCCGTCACCGGCCAGGGCTCCTGCATCACCGCCGACTGCGGCTCCAACCAACTCGAGTGCAACGGCGCCGGTGCAATCCCTCCAGCCACTCTGGCCGAGTTCACAATCGGTTCGGGTGATACAGAAGACTTCTACGACGTCAGCCTGGTCGATGGCTTCAACTTGCCTATGCTGGTCGAACCGAGCGGCGGCTCCGGTGACTGTTCTTCAACCGGGTGCGCGGTGAACTTGAATAAGGGGTGTCCGAGTGAGTTACAGTTCGGAGGAGGTGCGGGGTGTAGGAGCGCCTGCGAGGCTTTTCGGACGCCGGAGTACTGCTGCAGCGGCTCGTATGGCTCACCGTCGACTTGTAAGCCGTCGGTTTACTCGCAGATGTTTAAGGCGGCGTGTCCGACGGCCTATAGCTATGCGTACGATGATGGCACGAGTACGTTCACGTGTAGTAGTGGAGCTGATTACACCATAACATTCTGCCCTTCATCTACAACAAGTCTTAAATCTTCAACACCAACAACTCCAACACTTCCAACATTACCAACAACGACACCGCCCACGCCAACAACGACGTTAACACCGCCGATGCCGACACAAACAGCACCATCAGTATCACCACCAACAATGACACCACCAAGGCCAACGACGATGGTAACACCGCCACAGCCAACAGGGACAACGGCGACACCAACAGCACCGGCAACACCAACGAGGGCAACAGATGGGACCGGAGGTGGATATGTCATGGATTATTTTGGTTCATCGCCGAGTTTTAGTGGTGACGCATCCAAGACACTTGCTTCTATTGCCATGGCTGCTTCTTCTGTTTTGTTTTATTTTCTATTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

367

Amino Acids

37.89

Weight (kDa)

4.46

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 32 - 244 3.8e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180
fragaria_vesca FvH4_2g38310
malus_domestica MD08G1011400.v1.1
prunus_persica Prupe.1G364000_v2.0.a1
pyrus_communis pycom08g01000
rosa_chinensis RchiOBHm_Chr6g0303061
rosa_laevigata RLG00000011112
rosa_multiflora Rmu_ssc0000460.1_g000033
rosa_roxburghii Rroxscaffold_7G00165070
rosa_rugosa Rorug06G0319100
rosa_samantha Rh6AG432600 Rh6BG470000 Rh6CG445000 Rh6DG431800
rosa_wichuraiana Rw6G037500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 396
Acc36I ACCTGC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 441
AccI GTMKAC 1 cut(s) 599
AccII CGCG 1 cut(s) 476
AcoI YGGCCR 2 cut(s) 265, 348
AcvI CACGTG 1 cut(s) 693
AcyI GRCGYC 3 cut(s) 321, 393, 560
AfaI GTAC 3 cut(s) 569, 668, 685
AfiI CCNNNNNNNGG 2 cut(s) 263, 443
AflIII ACRYGT 1 cut(s) 692
AgsI TTSAA 6 cut(s) 59, 200, 415, 465, 487, 759
AjnI CCWGG 3 cut(s) 178, 267, 399
AluBI AGCT 4 cut(s) 172, 213, 660, 707
AluI AGCT 4 cut(s) 172, 213, 660, 707
Alw26I GTCTC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 228
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 4 cut(s) 265, 348, 651, 887
ApeKI GCWGC 3 cut(s) 573, 576, 1064
AspLEI GCGC 3 cut(s) 323, 476, 542
AspS9I GGNCC 1 cut(s) 975
AsuC2I CCSGG 2 cut(s) 120, 469
AsuHPI GGTGA 8 cut(s) 253, 274, 383, 464, 490, 585, 855, 1040
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 1 cut(s) 975
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 275
BauI CACGAG 1 cut(s) 679
BbrPI CACGTG 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 387
BbvI GCAGC 3 cut(s) 560, 588, 1051
BccI CCATC 5 cut(s) 401, 668, 862, 892, 965
BceAI ACGGC 4 cut(s) 334, 595, 666, 945
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 3 cut(s) 180, 269, 401
BcnI CCSGG 2 cut(s) 120, 469
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 3 cut(s) 128, 147, 152
BfmI CTRYAG 2 cut(s) 574, 655
BfoI RGCGCY 2 cut(s) 324, 543
BfuAI ACCTGC 1 cut(s) 213
BglI GCCNNNNNGGC 2 cut(s) 347, 548
BisI GCNGC 8 cut(s) 295, 442, 445, 574, 577, 580, 639, 1065
BlsI GCNGC 8 cut(s) 296, 443, 446, 575, 578, 581, 640, 1066
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 5 cut(s) 120, 180, 269, 401, 469
Bme18I GGWCC 1 cut(s) 975
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 975
BmiI GGNNCC 5 cut(s) 274, 298, 322, 448, 976
BmrFI CCNGG 5 cut(s) 120, 180, 269, 401, 469
BmsI GCATC 3 cut(s) 288, 825, 1043
BpiI GAAGAC 1 cut(s) 387
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 1 cut(s) 321
BpuMI CCSGG 2 cut(s) 120, 469
BsaAI YACGTR 1 cut(s) 693
BsaHI GRCGYC 3 cut(s) 321, 393, 560
BsaJI CCNNGG 3 cut(s) 268, 884, 1059
BsaWI WCCGGW 3 cut(s) 161, 449, 977
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 443
Bse118I RCCGGY 4 cut(s) 131, 263, 323, 946
BseBI CCWGG 3 cut(s) 180, 269, 401
BseDI CCNNGG 3 cut(s) 268, 884, 1059
BseGI GGATG 2 cut(s) 137, 1034
BseLI CCNNNNNNNGG 2 cut(s) 263, 443
BseRI GAGGAG 1 cut(s) 534
BseXI GCAGC 3 cut(s) 560, 588, 1051
Bsh1236I CGCG 1 cut(s) 476
BshFI GGCC 4 cut(s) 267, 350, 653, 889
BshNI GGYRCC 1 cut(s) 320
BsiHKCI CYCGRG 1 cut(s) 308
BsiWI CGTACG 1 cut(s) 666
BslFI GGGAC 2 cut(s) 937, 988
BslI CCNNNNNNNGG 2 cut(s) 263, 443
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 2 cut(s) 937, 988
BsnI GGCC 4 cut(s) 267, 350, 653, 889
BsoBI CYCGRG 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 1059
BspANI GGCC 4 cut(s) 267, 350, 653, 889
BspFNI CGCG 1 cut(s) 476
BspLI GGNNCC 5 cut(s) 274, 298, 322, 448, 976
BspMAI CTGCAG 1 cut(s) 578
BspMI ACCTGC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 320
BsrBI CCGCTC 1 cut(s) 441
BsrFI RCCGGY 4 cut(s) 131, 263, 323, 946
BssAI RCCGGY 4 cut(s) 131, 263, 323, 946
BssECI CCNNGG 3 cut(s) 268, 884, 1059
BssMI GATC 1 cut(s) 6
BssNI GRCGYC 3 cut(s) 321, 393, 560
BssSI CACGAG 1 cut(s) 679
BssT1I CCWWGG 2 cut(s) 884, 1059
Bst2BI CACGAG 1 cut(s) 679
Bst2UI CCWGG 3 cut(s) 180, 269, 401
Bst4CI ACNGT 4 cut(s) 112, 458, 513, 597
BstACI GRCGYC 3 cut(s) 321, 393, 560
BstBAI YACGTR 1 cut(s) 693
BstC8I GCNNGC 1 cut(s) 544
BstDSI CCRYGG 1 cut(s) 1059
BstF5I GGATG 2 cut(s) 137, 1034
BstFNI CGCG 1 cut(s) 476
BstH2I RGCGCY 2 cut(s) 324, 543
BstHHI GCGC 3 cut(s) 323, 476, 542
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 8 cut(s) 189, 219, 347, 548, 579, 588, 1055, 1064
BstNI CCWGG 3 cut(s) 180, 269, 401
BstSCI CCNGG 5 cut(s) 118, 178, 267, 399, 467
BstSFI CTRYAG 2 cut(s) 574, 655
BstUI CGCG 1 cut(s) 476
BstV1I GCAGC 3 cut(s) 560, 588, 1051
BstV2I GAAGAC 1 cut(s) 387
BstXI CCANNNNNNTGG 1 cut(s) 213
BsuRI GGCC 4 cut(s) 267, 350, 653, 889
BtgI CCRYGG 1 cut(s) 1059
BtgZI GCGATG 1 cut(s) 996
BtsCI GGATG 2 cut(s) 137, 1034
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 544
CaiI CAGNNNCTG 1 cut(s) 228
CfoI GCGC 3 cut(s) 323, 476, 542
Cfr10I RCCGGY 4 cut(s) 131, 263, 323, 946
Cfr13I GGNCC 1 cut(s) 975
CseI GACGC 2 cut(s) 568, 1040
Csp6I GTAC 3 cut(s) 568, 667, 684
CviAII CATG 2 cut(s) 994, 1060
CviQI GTAC 3 cut(s) 568, 667, 684
DinI GGCGCC 1 cut(s) 322
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
EaeI YGGCCR 2 cut(s) 265, 348
Eco130I CCWWGG 2 cut(s) 884, 1059
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 975
Eco72I CACGTG 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 308
EcoRII CCWGG 3 cut(s) 178, 267, 399
EcoT14I CCWWGG 2 cut(s) 884, 1059
EcoT38I GRGCYC 1 cut(s) 275
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 2 cut(s) 884, 1059
FaeI CATG 2 cut(s) 997, 1063
FaiI YATR 8 cut(s) 425, 588, 657, 663, 719, 990, 995, 1061
FaqI GGGAC 2 cut(s) 937, 988
FatI CATG 2 cut(s) 993, 1059
FauI CCCGC 1 cut(s) 520
FblI GTMKAC 1 cut(s) 599
Fnu4HI GCNGC 8 cut(s) 295, 442, 445, 574, 577, 580, 639, 1065
FokI GGATG 2 cut(s) 124, 1021
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 8 cut(s) 295, 442, 445, 574, 577, 580, 639, 1065
FspBI CTAG 3 cut(s) 128, 147, 152
GlaI GCGC 3 cut(s) 322, 475, 541
GluI GCNGC 8 cut(s) 295, 442, 445, 574, 577, 580, 639, 1065
GsuI CTGGAG 1 cut(s) 321
HaeII RGCGCY 2 cut(s) 324, 543
HaeIII GGCC 4 cut(s) 267, 350, 653, 889
HgaI GACGC 2 cut(s) 568, 1040
HhaI GCGC 3 cut(s) 323, 476, 542
Hin1I GRCGYC 3 cut(s) 321, 393, 560
Hin1II CATG 2 cut(s) 997, 1063
Hin6I GCGC 3 cut(s) 321, 474, 540
HinP1I GCGC 3 cut(s) 321, 474, 540
HincII GTYRAC 2 cut(s) 600, 825
HindII GTYRAC 2 cut(s) 600, 825
HinfI GANTC 2 cut(s) 165, 185
HpaI GTTAAC 1 cut(s) 825
HphI GGTGA 8 cut(s) 253, 274, 383, 464, 490, 585, 855, 1040
Hpy166II GTNNAC 6 cut(s) 357, 481, 600, 619, 690, 825
Hpy188I TCNGA 4 cut(s) 501, 518, 558, 648
Hpy8I GTNNAC 6 cut(s) 357, 481, 600, 619, 690, 825
Hpy99I CGWCG 6 cut(s) 395, 601, 616, 652, 823, 898
HpyAV CCTTC 1 cut(s) 741
HpyCH4III ACNGT 4 cut(s) 112, 458, 513, 597
HpyCH4IV ACGT 4 cut(s) 393, 686, 692, 821
HpyCH4V TGCA 5 cut(s) 246, 279, 315, 329, 576
HpyF10VI GCNNNNNNNGC 8 cut(s) 189, 219, 347, 548, 579, 588, 1055, 1064
HpySE526I ACGT 4 cut(s) 393, 686, 692, 821
Hsp92I GRCGYC 3 cut(s) 321, 393, 560
Hsp92II CATG 2 cut(s) 997, 1063
HspAI GCGC 3 cut(s) 321, 474, 540
KasI GGCGCC 1 cut(s) 320
KspAI GTTAAC 1 cut(s) 825
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 7 cut(s) 177, 197, 278, 302, 452, 537, 704
Lsp1109I GCAGC 3 cut(s) 560, 588, 1051
LweI GCATC 3 cut(s) 288, 825, 1043
MaeI CTAG 3 cut(s) 128, 147, 152
MaeII ACGT 4 cut(s) 393, 686, 692, 821
MaeIII GTNAC 5 cut(s) 259, 452, 507, 901, 1028
MalI GATC 1 cut(s) 8
MbiI CCGCTC 1 cut(s) 441
MboI GATC 1 cut(s) 6
MboII GAAGA 4 cut(s) 392, 453, 747, 1062
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 1 cut(s) 70
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 5 cut(s) 199, 324, 671, 797, 806
MnlI CCTC 6 cut(s) 345, 512, 515, 541, 954, 974
MseI TTAA 4 cut(s) 69, 633, 750, 824
MspA1I CMGCKG 1 cut(s) 579
MspR9I CCNGG 5 cut(s) 120, 180, 269, 401, 469
MvaI CCWGG 3 cut(s) 180, 269, 401
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 8 cut(s) 189, 219, 347, 548, 579, 588, 1055, 1064
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 2 cut(s) 120, 469
NcoI CCATGG 1 cut(s) 1059
NdeII GATC 1 cut(s) 6
NlaIII CATG 2 cut(s) 997, 1063
NlaIV GGNNCC 5 cut(s) 274, 298, 322, 448, 976
NmeAIII GCCGAG 2 cut(s) 376, 1041
NmuCI GTSAC 3 cut(s) 259, 452, 1028
PaeR7I CTCGAG 1 cut(s) 308
PcsI WCGNNNNNNNCGW 1 cut(s) 815
PfeI GAWTC 1 cut(s) 165
Pfl23II CGTACG 1 cut(s) 666
PflFI GACNNNGTC 1 cut(s) 257
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 8 cut(s) 296, 443, 446, 575, 578, 581, 640, 1066
PleI GAGTC 1 cut(s) 193
PluTI GGCGCC 1 cut(s) 324
PmaCI CACGTG 1 cut(s) 693
PmlI CACGTG 1 cut(s) 693
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 693
Psp6I CCWGG 3 cut(s) 178, 267, 399
PspCI CACGTG 1 cut(s) 693
PspGI CCWGG 3 cut(s) 178, 267, 399
PspLI CGTACG 1 cut(s) 666
PspN4I GGNNCC 5 cut(s) 274, 298, 322, 448, 976
PspPI GGNCC 1 cut(s) 975
PspXI VCTCGAGB 1 cut(s) 308
PstI CTGCAG 1 cut(s) 578
PstNI CAGNNNCTG 1 cut(s) 228
PsyI GACNNNGTC 1 cut(s) 257
RsaI GTAC 3 cut(s) 569, 668, 685
RsaNI GTAC 3 cut(s) 568, 667, 684
SalI GTCGAC 1 cut(s) 598
SaqAI TTAA 4 cut(s) 69, 633, 750, 824
SatI GCNGC 8 cut(s) 295, 442, 445, 574, 577, 580, 639, 1065
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 975
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 5 cut(s) 120, 180, 269, 401, 469
SduI GDGCHC 1 cut(s) 275
SfaNI GCATC 3 cut(s) 288, 825, 1043
SfcI CTRYAG 2 cut(s) 574, 655
SfoI GGCGCC 1 cut(s) 322
Sfr274I CTCGAG 1 cut(s) 308
SgrAI CRCCGGYG 1 cut(s) 323
SinI GGWCC 1 cut(s) 975
SlaI CTCGAG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 70
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 3 cut(s) 128, 147, 152
StyD4I CCNGG 5 cut(s) 118, 178, 267, 399, 467
StyI CCWWGG 2 cut(s) 884, 1059
TaaI ACNGT 4 cut(s) 112, 458, 513, 597
TaiI ACGT 4 cut(s) 396, 689, 695, 824
TaqI TCGA 8 cut(s) 5, 74, 235, 252, 309, 405, 432, 599
TasI AATT 1 cut(s) 70
TatI WGTACW 1 cut(s) 567
TauI GCSGC 5 cut(s) 297, 444, 447, 582, 641
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 4 cut(s) 69, 633, 750, 824
Tru9I TTAA 4 cut(s) 69, 633, 750, 824
TseFI GTSAC 3 cut(s) 259, 452, 1028
TseI GCWGC 3 cut(s) 573, 576, 1064
Tsp45I GTSAC 3 cut(s) 259, 452, 1028
TspDTI ATGAA 3 cut(s) 126, 723, 999
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 975
XhoI CTCGAG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 599
XspI CTAG 3 cut(s) 128, 147, 152
ZraI GACGTC 1 cut(s) 394
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.