Prupe.1G364000_v2.0.a1

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010716
Physical Location & Seq
Reverse (-)
33464754 .. 33466811
2058 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G364000.1

Sequence Viewer

Length: 1011 bp
ATGGATCTGAATCTGATGGCCATCTTCCATTTTTCTTCTTTGTACATCACCCTCATTTTGTTTACAATTTGCAAAGGCATAGCGGGAGCTACATTTACAATCATAAACAAGTGCGACTACACTGTATGGCCCGGAATTCTATCCAATGCCGGCAGTAGCAGATTAGACAGCACCGGCCTCCAACTCCAACACGGCGCCTCCCGTTCATTTCAATCCCCACCCAACTGGTCAGGCCGATTCTGGGCTCGAACCGGTTGTAACTTCGACCCCACCACCGGTCAGGGCACCTGCACCACCGGAGACTGCGGCTCCAACCAAGTCGAGTGCAATGGCGCCGGCGCTAACCCACCAGCCACTCTCGCCGAGTTCACGATCGGCGGCTCCGACAACCAGGATTTCTACGACGTCAGCTTAGTGGACGGCTACAACTTACCCATGATGGTGGAGCCGAGCGGCGGGTCGGGTAGTTGTTTGTCGACTGGGTGCGCAACGGACTTGAACCAGCGGTGCCCGGCTGAGTTACGGGTCGGGGACGGCGCGGCGTGTAAGAGTGCGTGTGAGGCTTTTGGGAGCCCGGAGTATTGTTGCAACGGCGCGTTTGGTACCCCCGACACTTGTAAGCCGTCGGTTTATTCGGAGATGTTTAAAGCCGCGTGTCCTAGATCGTATAGCTACGCGTATGACGATGCCAGCAGTACATTTACTTGTACTGGAGCTGATTACACCATAACATTCTGCCCTTCCACAACAAGTCAAAAATCTGCAAGTACGTCTACAACAACAAGTAATGGGTCGGGGCAGACAACAACCACAACAAATAACGGGTCTGGAGGTGGGAGTGGGACGACAGGGGAGGTCCCTGCGGTGGTGGGAAACAGTAACAGTCCTCCTCCATGGTTTCCGAACTTTTTCACTGGAGACTCAACGAAGACCCTTTCTTCTTCTGCTCTTTACACTTCATTGGTTGCCACTTTATTTCTCTTTCTTTCTCTATCGTTGCTTCATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

337

Amino Acids

34.97

Weight (kDa)

4.58

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180
fragaria_vesca FvH4_2g38310
malus_domestica MD08G1011400.v1.1
prunus_persica Prupe.1G364000_v2.0.a1
pyrus_communis pycom08g01000
rosa_chinensis RchiOBHm_Chr6g0303061
rosa_laevigata RLG00000011112
rosa_multiflora Rmu_ssc0000460.1_g000033
rosa_roxburghii Rroxscaffold_7G00165070
rosa_rugosa Rorug06G0319100
rosa_samantha Rh6AG432600 Rh6BG470000 Rh6CG445000 Rh6DG431800
rosa_wichuraiana Rw6G037500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
AatII GACGTC 1 cut(s) 408
Acc16I TGCGCA 1 cut(s) 487
Acc36I ACCTGC 1 cut(s) 296
Acc65I GGTACC 1 cut(s) 602
AccB1I GGYRCC 5 cut(s) 194, 284, 332, 507, 602
AccBSI CCGCTC 1 cut(s) 453
AccI GTMKAC 2 cut(s) 476, 773
AccII CGCG 4 cut(s) 539, 596, 653, 677
AciI CCGC 9 cut(s) 83, 306, 378, 453, 456, 505, 539, 651, 863
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 135
AcyI GRCGYC 3 cut(s) 195, 333, 405
AfaI GTAC 5 cut(s) 44, 604, 697, 709, 769
AfiI CCNNNNNNNGG 4 cut(s) 241, 275, 455, 865
AflIII ACRYGT 1 cut(s) 675
AgeI ACCGGT 2 cut(s) 251, 275
AgsI TTSAA 2 cut(s) 212, 499
AjnI CCWGG 1 cut(s) 390
AluBI AGCT 4 cut(s) 89, 411, 672, 716
AluI AGCT 4 cut(s) 89, 411, 672, 716
Alw26I GTCTC 2 cut(s) 294, 912
AlwI GGATC 1 cut(s) 12
AoxI GGCC 4 cut(s) 18, 128, 175, 232
ApoI RAATTY 1 cut(s) 135
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
AsiGI ACCGGT 2 cut(s) 251, 275
Asp700I GAANNNNTTC 1 cut(s) 908
Asp718I GGTACC 1 cut(s) 602
AspLEI GCGC 6 cut(s) 197, 335, 341, 488, 539, 596
AspS9I GGNCC 2 cut(s) 129, 856
AsuC2I CCSGG 3 cut(s) 132, 512, 575
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 1 cut(s) 856
BaeGI GKGCMC 2 cut(s) 287, 512
BalI TGGCCA 1 cut(s) 20
BanI GGYRCC 5 cut(s) 194, 284, 332, 507, 602
BanII GRGCYC 2 cut(s) 247, 575
BbsI GAAGAC 1 cut(s) 935
BccI CCATC 3 cut(s) 10, 29, 433
BceAI ACGGC 5 cut(s) 208, 436, 550, 607, 607
BciT130I CCWGG 1 cut(s) 392
BcnI CCSGG 3 cut(s) 132, 512, 575
BcoDI GTCTC 2 cut(s) 294, 912
BfaI CTAG 1 cut(s) 660
BfoI RGCGCY 3 cut(s) 198, 336, 342
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 5 cut(s) 307, 379, 454, 540, 651
BlsI GCNGC 5 cut(s) 308, 380, 455, 541, 652
Bme1390I CCNGG 4 cut(s) 132, 392, 512, 575
Bme18I GGWCC 1 cut(s) 856
BmgT120I GGNCC 2 cut(s) 129, 856
BmrFI CCNGG 4 cut(s) 132, 392, 512, 575
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 1 cut(s) 676
BmuI ACTGGG 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 935
BpmI CTGGAG 3 cut(s) 732, 849, 936
BpuMI CCSGG 3 cut(s) 132, 512, 575
BsaBI GATNNNNATC 2 cut(s) 9, 20
BsaHI GRCGYC 3 cut(s) 195, 333, 405
BsaJI CCNNGG 1 cut(s) 893
BsaWI WCCGGW 3 cut(s) 251, 275, 296
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 293, 323
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 275, 455, 865
Bse118I RCCGGY 5 cut(s) 149, 173, 251, 275, 335
Bse1I ACTGG 4 cut(s) 230, 484, 715, 919
Bse3DI GCAATG 1 cut(s) 334
Bse8I GATNNNNATC 2 cut(s) 9, 20
BseBI CCWGG 1 cut(s) 392
BseDI CCNNGG 1 cut(s) 893
BseJI GATNNNNATC 2 cut(s) 9, 20
BseLI CCNNNNNNNGG 4 cut(s) 241, 275, 455, 865
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 4 cut(s) 230, 484, 715, 919
BseRI GAGGAG 1 cut(s) 879
BseSI GKGCMC 2 cut(s) 287, 512
BsgI GTGCAG 1 cut(s) 274
Bsh1236I CGCG 4 cut(s) 539, 596, 653, 677
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 4 cut(s) 20, 130, 177, 234
BshNI GGYRCC 5 cut(s) 194, 284, 332, 507, 602
BshTI ACCGGT 2 cut(s) 251, 275
BsiEI CGRYCG 1 cut(s) 375
BsiSI CCGG 9 cut(s) 132, 150, 174, 252, 276, 297, 336, 512, 575
BslFI GGGAC 3 cut(s) 545, 842, 856
BslI CCNNNNNNNGG 4 cut(s) 241, 275, 455, 865
BsmAI GTCTC 2 cut(s) 294, 912
BsmFI GGGAC 3 cut(s) 545, 842, 856
BsnI GGCC 4 cut(s) 20, 130, 177, 234
Bsp1286I GDGCHC 4 cut(s) 247, 287, 512, 575
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 3 cut(s) 4, 372, 662
Bsp19I CCATGG 1 cut(s) 893
BspACI CCGC 9 cut(s) 83, 306, 378, 453, 456, 505, 539, 651, 863
BspANI GGCC 4 cut(s) 20, 130, 177, 234
BspCNI CTCAG 1 cut(s) 508
BspFNI CGCG 4 cut(s) 539, 596, 653, 677
BspMI ACCTGC 1 cut(s) 296
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 5 cut(s) 194, 284, 332, 507, 602
BsrBI CCGCTC 1 cut(s) 453
BsrDI GCAATG 1 cut(s) 334
BsrFI RCCGGY 5 cut(s) 149, 173, 251, 275, 335
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 4 cut(s) 230, 484, 715, 919
BssAI RCCGGY 5 cut(s) 149, 173, 251, 275, 335
BssECI CCNNGG 1 cut(s) 893
BssMI GATC 3 cut(s) 4, 372, 662
BssNI GRCGYC 3 cut(s) 195, 333, 405
BssT1I CCWWGG 1 cut(s) 893
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 3 cut(s) 124, 878, 884
BstACI GRCGYC 3 cut(s) 195, 333, 405
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 3 cut(s) 151, 337, 691
BstDEI CTNAG 3 cut(s) 412, 516, 1008
BstDSI CCRYGG 1 cut(s) 893
BstFNI CGCG 4 cut(s) 539, 596, 653, 677
BstH2I RGCGCY 3 cut(s) 198, 336, 342
BstHHI GCGC 6 cut(s) 197, 335, 341, 488, 539, 596
BstKTI GATC 3 cut(s) 7, 375, 665
BstMAI GTCTC 2 cut(s) 294, 912
BstMBI GATC 3 cut(s) 4, 372, 662
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 2 cut(s) 359, 560
BstNI CCWGG 1 cut(s) 392
BstSCI CCNGG 4 cut(s) 130, 390, 510, 573
BstSLI GKGCMC 2 cut(s) 287, 512
BstUI CGCG 4 cut(s) 539, 596, 653, 677
BstV2I GAAGAC 1 cut(s) 935
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 2 cut(s) 225, 442
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 4 cut(s) 20, 130, 177, 234
BtgI CCRYGG 1 cut(s) 893
BtsIMutI CAGTG 2 cut(s) 120, 912
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 3 cut(s) 151, 337, 691
CfoI GCGC 6 cut(s) 197, 335, 341, 488, 539, 596
Cfr10I RCCGGY 5 cut(s) 149, 173, 251, 275, 335
Cfr13I GGNCC 2 cut(s) 129, 856
Csp6I GTAC 5 cut(s) 43, 603, 696, 708, 768
CspAI ACCGGT 2 cut(s) 251, 275
CviAII CATG 2 cut(s) 436, 894
CviQI GTAC 5 cut(s) 43, 603, 696, 708, 768
DdeI CTNAG 3 cut(s) 412, 516, 1008
DinI GGCGCC 2 cut(s) 196, 334
DpnI GATC 3 cut(s) 6, 374, 664
DpnII GATC 3 cut(s) 4, 372, 662
DraI TTTAAA 1 cut(s) 646
EaeI YGGCCR 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 893
Eco24I GRGCYC 2 cut(s) 247, 575
Eco47I GGWCC 1 cut(s) 856
EcoO109I RGGNCCY 1 cut(s) 856
EcoRI GAATTC 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 893
EcoT38I GRGCYC 2 cut(s) 247, 575
EgeI GGCGCC 2 cut(s) 196, 334
EheI GGCGCC 2 cut(s) 196, 334
ErhI CCWWGG 1 cut(s) 893
FaeI CATG 2 cut(s) 439, 897
FaiI YATR 8 cut(s) 80, 104, 127, 437, 669, 681, 728, 895
FaqI GGGAC 3 cut(s) 545, 842, 856
FatI CATG 2 cut(s) 435, 893
FauI CCCGC 2 cut(s) 76, 449
FblI GTMKAC 2 cut(s) 476, 773
Fnu4HI GCNGC 5 cut(s) 307, 379, 454, 540, 651
FriOI GRGCYC 2 cut(s) 247, 575
Fsp4HI GCNGC 5 cut(s) 307, 379, 454, 540, 651
FspBI CTAG 1 cut(s) 660
FspI TGCGCA 1 cut(s) 487
GlaI GCGC 6 cut(s) 196, 334, 340, 487, 538, 595
GluI GCNGC 5 cut(s) 307, 379, 454, 540, 651
GsuI CTGGAG 3 cut(s) 732, 849, 936
HaeII RGCGCY 3 cut(s) 198, 336, 342
HaeIII GGCC 4 cut(s) 20, 130, 177, 234
HapII CCGG 9 cut(s) 132, 150, 174, 252, 276, 297, 336, 512, 575
HhaI GCGC 6 cut(s) 197, 335, 341, 488, 539, 596
Hin1I GRCGYC 3 cut(s) 195, 333, 405
Hin1II CATG 2 cut(s) 439, 897
Hin6I GCGC 6 cut(s) 195, 333, 339, 486, 537, 594
HinP1I GCGC 6 cut(s) 195, 333, 339, 486, 537, 594
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HinfI GANTC 3 cut(s) 10, 237, 920
HpaII CCGG 9 cut(s) 132, 150, 174, 252, 276, 297, 336, 512, 575
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 5 cut(s) 63, 369, 418, 477, 774
Hpy188I TCNGA 5 cut(s) 9, 15, 385, 637, 903
Hpy188III TCNNGA 2 cut(s) 370, 828
Hpy8I GTNNAC 5 cut(s) 63, 369, 418, 477, 774
Hpy99I CGWCG 2 cut(s) 407, 628
HpyAV CCTTC 1 cut(s) 750
HpyCH4III ACNGT 3 cut(s) 124, 878, 884
HpyCH4IV ACGT 2 cut(s) 405, 770
HpyCH4V TGCA 5 cut(s) 72, 291, 327, 588, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 560
HpyF3I CTNAG 3 cut(s) 412, 516, 1008
HpySE526I ACGT 2 cut(s) 405, 770
Hsp92I GRCGYC 3 cut(s) 195, 333, 405
Hsp92II CATG 2 cut(s) 439, 897
HspAI GCGC 6 cut(s) 195, 333, 339, 486, 537, 594
KasI GGCGCC 2 cut(s) 194, 332
KpnI GGTACC 1 cut(s) 606
KroI GCCGGC 2 cut(s) 149, 335
KroNI GCCGGC 2 cut(s) 151, 337
Kzo9I GATC 3 cut(s) 4, 372, 662
LmnI GCTCC 6 cut(s) 86, 314, 386, 445, 570, 713
LweI GCATC 1 cut(s) 676
MaeI CTAG 1 cut(s) 660
MaeII ACGT 2 cut(s) 405, 770
MaeIII GTNAC 3 cut(s) 257, 519, 878
MalI GATC 3 cut(s) 6, 374, 664
MbiI CCGCTC 1 cut(s) 453
MboI GATC 3 cut(s) 4, 372, 662
MboII GAAGA 5 cut(s) 16, 27, 930, 933, 940
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 4 cut(s) 247, 287, 512, 575
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 2 cut(s) 66, 135
MluI ACGCGT 1 cut(s) 675
MluNI TGGCCA 1 cut(s) 20
Mly113I GGCGCC 2 cut(s) 195, 333
MlyI GAGTC 1 cut(s) 914
MmeI TCCRAC 4 cut(s) 205, 211, 336, 408
MnlI CCTC 8 cut(s) 62, 188, 208, 553, 824, 847, 897, 900
Mox20I TGGCCA 1 cut(s) 20
MreI CGCCGGCG 1 cut(s) 335
MroNI GCCGGC 2 cut(s) 149, 335
MroXI GAANNNNTTC 1 cut(s) 908
MscI TGGCCA 1 cut(s) 20
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 1 cut(s) 440
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 505
MspI CCGG 9 cut(s) 132, 150, 174, 252, 276, 297, 336, 512, 575
MspR9I CCNGG 4 cut(s) 132, 392, 512, 575
MvaI CCWGG 1 cut(s) 392
MvnI CGCG 4 cut(s) 539, 596, 653, 677
MwoI GCNNNNNNNGC 2 cut(s) 359, 560
NaeI GCCGGC 2 cut(s) 151, 337
NarI GGCGCC 2 cut(s) 195, 333
NciI CCSGG 3 cut(s) 132, 512, 575
NcoI CCATGG 1 cut(s) 893
NdeII GATC 3 cut(s) 4, 372, 662
NgoMIV GCCGGC 2 cut(s) 149, 335
NlaIII CATG 2 cut(s) 439, 897
NmeAIII GCCGAG 2 cut(s) 388, 474
NsbI TGCGCA 1 cut(s) 487
PaqCI CACCTGC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 2 cut(s) 381, 681
PdiI GCCGGC 2 cut(s) 151, 337
PdmI GAANNNNTTC 1 cut(s) 908
PfeI GAWTC 2 cut(s) 10, 237
PinAI ACCGGT 2 cut(s) 251, 275
PkrI GCNGC 5 cut(s) 308, 380, 455, 541, 652
Ple19I CGATCG 1 cut(s) 375
PleI GAGTC 1 cut(s) 914
PluTI GGCGCC 2 cut(s) 198, 336
PpsI GAGTC 1 cut(s) 914
PpuMI RGGWCCY 1 cut(s) 856
Psp5II RGGWCCY 1 cut(s) 856
Psp6I CCWGG 1 cut(s) 390
PspGI CCWGG 1 cut(s) 390
PspPI GGNCC 2 cut(s) 129, 856
PspPPI RGGWCCY 1 cut(s) 856
PsuI RGATCY 1 cut(s) 4
PvuI CGATCG 1 cut(s) 375
RsaI GTAC 5 cut(s) 44, 604, 697, 709, 769
RsaNI GTAC 5 cut(s) 43, 603, 696, 708, 768
RseI CAYNNNNRTG 1 cut(s) 440
SalI GTCGAC 1 cut(s) 475
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 5 cut(s) 307, 379, 454, 540, 651
Sau3AI GATC 3 cut(s) 4, 372, 662
Sau96I GGNCC 2 cut(s) 129, 856
SchI GAGTC 1 cut(s) 914
ScrFI CCNGG 4 cut(s) 132, 392, 512, 575
SduI GDGCHC 4 cut(s) 247, 287, 512, 575
SetI ASST 9 cut(s) 91, 290, 408, 413, 674, 718, 773, 835, 858
SfaNI GCATC 1 cut(s) 676
SfoI GGCGCC 2 cut(s) 196, 334
SgrAI CRCCGGYG 1 cut(s) 335
SinI GGWCC 1 cut(s) 856
SmiMI CAYNNNNRTG 1 cut(s) 440
Sse9I AATT 2 cut(s) 66, 135
SsiI CCGC 9 cut(s) 83, 306, 378, 453, 456, 505, 539, 651, 863
SspDI GGCGCC 2 cut(s) 194, 332
SspMI CTAG 1 cut(s) 660
StyD4I CCNGG 4 cut(s) 130, 390, 510, 573
StyI CCWWGG 1 cut(s) 893
TaaI ACNGT 3 cut(s) 124, 878, 884
TaiI ACGT 2 cut(s) 408, 773
TaqI TCGA 4 cut(s) 247, 264, 321, 476
TasI AATT 2 cut(s) 66, 135
TatI WGTACW 3 cut(s) 42, 695, 707
TauI GCSGC 5 cut(s) 309, 381, 456, 542, 653
TfiI GAWTC 2 cut(s) 10, 237
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 2 cut(s) 127, 919
TspDTI ATGAA 3 cut(s) 195, 948, 992
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 2 cut(s) 127, 919
VpaK11BI GGWCC 1 cut(s) 856
XapI RAATTY 1 cut(s) 135
XmiI GTMKAC 2 cut(s) 476, 773
XmnI GAANNNNTTC 1 cut(s) 908
XspI CTAG 1 cut(s) 660
ZraI GACGTC 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.