pycom08g01000

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0010716
Physical Location & Seq
Reverse (-)
773118 .. 773958
841 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g01000.1

Sequence Viewer

Length: 753 bp
ATGGATCTGATGGCCTTTTTCCATTATTCTCCTCTTCACATCACTCTAATTTTGTTTGCATTTTGCTGCAAAGGAATATCAGGAGCTACATTTACAGTCATGAACAAGTGCGACTACACAGTATGGCCGGGAATTCTATCCAATGCAGGGACTACCAGTTTAGACAGCACCGGCCTTGAGCTCCCACCGGGCGGCTCACGTTCCTTTCAATCTCCACCTAACTGGTCCGGCCGGTTCTGGGGTCGAACAGGCTGCAACTTTGACCCCACAACCGGGGCTGGCACCTGTGCCACCGCCGACTGTGGCTCCAACCAGATGGAATGCAATGGTGCAGGTGCAACCCCGCCCGCTACTCTGGCCGAGTTCACAATTGGCGGCTCCGACAACCAGGACTTCTATGATGTCAGCTTAGTTGACGGATACAATTTGCCCATGATGGTGGAACCTAGCGGCGGTTCCGGTAATTGTTTGTCCACCGGGTGCGCCACCGACTTGAACCAACGGTGCCCCGCTGAGTTGCAGTTCGGGAACGGCGCGGGGTGTAAGAGTGCGTGCGAGGCGTTTGGGAGCCCCGAGTACTGTTGCAACGGCGCGTTTGCTACGCCGGACACTTGTAAGCCGTCGGTGTACTCGGAGATGTTCAAGTCGGCATGTCCGAGATCGTATAGCTACGCGTACGACGATGCCACGAGTACGTTTACATGTAGTGGAGCTGATTACACCATAACCTTCTGCCCTTCTACTACAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

251

Amino Acids

26.32

Weight (kDa)

4.37

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 35 - 246 2e-85 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180
fragaria_vesca FvH4_2g38310
malus_domestica MD08G1011400.v1.1
prunus_persica Prupe.1G364000_v2.0.a1
pyrus_communis pycom08g01000
rosa_chinensis RchiOBHm_Chr6g0303061
rosa_laevigata RLG00000011112
rosa_multiflora Rmu_ssc0000460.1_g000033
rosa_roxburghii Rroxscaffold_7G00165070
rosa_rugosa Rorug06G0319100
rosa_samantha Rh6AG432600 Rh6BG470000 Rh6CG445000 Rh6DG431800
rosa_wichuraiana Rw6G037500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 323
Acc36I ACCTGC 1 cut(s) 323
AccB1I GGYRCC 2 cut(s) 281, 504
AccII CGCG 3 cut(s) 536, 593, 674
AciI CCGC 9 cut(s) 192, 294, 344, 348, 375, 450, 453, 510, 536
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 3 cut(s) 125, 229, 357
AcsI RAATTY 1 cut(s) 132
AdeI CACNNNGTG 1 cut(s) 480
AfaI GTAC 4 cut(s) 578, 629, 677, 694
AfiI CCNNNNNNNGG 6 cut(s) 147, 191, 238, 272, 273, 452
AflIII ACRYGT 2 cut(s) 672, 701
AgsI TTSAA 3 cut(s) 209, 496, 643
AjnI CCWGG 1 cut(s) 387
AluBI AGCT 5 cut(s) 86, 181, 408, 669, 713
AluI AGCT 5 cut(s) 86, 181, 408, 669, 713
Alw21I GWGCWC 1 cut(s) 183
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 572
AoxI GGCC 5 cut(s) 12, 125, 172, 229, 357
ApeKI GCWGC 2 cut(s) 66, 252
ApoI RAATTY 1 cut(s) 132
AspLEI GCGC 3 cut(s) 485, 536, 593
AspS9I GGNCC 1 cut(s) 225
AsuC2I CCSGG 4 cut(s) 129, 189, 274, 478
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 509
BanI GGYRCC 2 cut(s) 281, 504
BanII GRGCYC 2 cut(s) 183, 572
BauI CACGAG 1 cut(s) 688
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 53, 239
BccI CCATC 3 cut(s) 4, 310, 430
BceAI ACGGC 3 cut(s) 547, 604, 604
BcgI CGANNNNNNTGC 2 cut(s) 234, 268
BciT130I CCWGG 1 cut(s) 389
BciVI GTATCC 1 cut(s) 413
BcnI CCSGG 4 cut(s) 129, 189, 274, 478
BfaI CTAG 1 cut(s) 447
BfuAI ACCTGC 1 cut(s) 323
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 5 cut(s) 67, 193, 253, 376, 451
BlsI GCNGC 5 cut(s) 68, 194, 254, 377, 452
BmcAI AGTACT 1 cut(s) 578
Bme1390I CCNGG 5 cut(s) 129, 189, 274, 389, 478
Bme18I GGWCC 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 7 cut(s) 283, 307, 379, 444, 457, 506, 569
BmrFI CCNGG 5 cut(s) 129, 189, 274, 389, 478
BmsI GCATC 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 4 cut(s) 129, 189, 274, 478
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 6 cut(s) 147, 191, 238, 272, 273, 452
Bse118I RCCGGY 2 cut(s) 170, 231
Bse1I ACTGG 2 cut(s) 156, 227
Bse3DI GCAATG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 1 cut(s) 273
BseLI CCNNNNNNNGG 6 cut(s) 147, 191, 238, 272, 273, 452
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 2 cut(s) 156, 227
BseRI GAGGAG 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 509
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 53, 239
BsgI GTGCAG 1 cut(s) 351
Bsh1236I CGCG 3 cut(s) 536, 593, 674
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 5 cut(s) 14, 127, 174, 231, 359
BshNI GGYRCC 2 cut(s) 281, 504
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 9 cut(s) 128, 171, 188, 228, 232, 273, 459, 477, 605
BsiWI CGTACG 1 cut(s) 675
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 6 cut(s) 147, 191, 238, 272, 273, 452
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 5 cut(s) 14, 127, 174, 231, 359
BsoBI CYCGRG 1 cut(s) 572
Bsp1286I GDGCHC 3 cut(s) 183, 509, 572
Bsp143I GATC 2 cut(s) 4, 659
BspACI CCGC 9 cut(s) 192, 294, 344, 348, 375, 450, 453, 510, 536
BspANI GGCC 5 cut(s) 14, 127, 174, 231, 359
BspCNI CTCAG 1 cut(s) 505
BspFNI CGCG 3 cut(s) 536, 593, 674
BspHI TCATGA 1 cut(s) 99
BspLI GGNNCC 7 cut(s) 283, 307, 379, 444, 457, 506, 569
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 2 cut(s) 281, 504
BsrDI GCAATG 1 cut(s) 331
BsrFI RCCGGY 2 cut(s) 170, 231
BsrI ACTGG 2 cut(s) 156, 227
BssAI RCCGGY 2 cut(s) 170, 231
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 4, 659
BssSI CACGAG 1 cut(s) 688
Bst2BI CACGAG 1 cut(s) 688
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 5 cut(s) 97, 121, 302, 504, 581
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 3 cut(s) 280, 348, 553
BstDEI CTNAG 2 cut(s) 409, 513
BstFNI CGCG 3 cut(s) 536, 593, 674
BstHHI GCGC 3 cut(s) 485, 536, 593
BstKTI GATC 2 cut(s) 7, 662
BstMBI GATC 2 cut(s) 4, 659
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 356, 557
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 2 cut(s) 654, 705
BstSCI CCNGG 5 cut(s) 127, 187, 272, 387, 476
BstSLI GKGCMC 1 cut(s) 509
BstUI CGCG 3 cut(s) 536, 593, 674
BstV1I GCAGC 2 cut(s) 53, 239
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 3 cut(s) 222, 316, 439
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 229
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 5 cut(s) 14, 127, 174, 231, 359
BveI ACCTGC 1 cut(s) 323
Cac8I GCNNGC 3 cut(s) 280, 348, 553
CciI TCATGA 1 cut(s) 99
CfoI GCGC 3 cut(s) 485, 536, 593
Cfr10I RCCGGY 2 cut(s) 170, 231
Cfr13I GGNCC 1 cut(s) 225
Csp6I GTAC 4 cut(s) 577, 628, 676, 693
CviAII CATG 4 cut(s) 100, 433, 651, 702
CviQI GTAC 4 cut(s) 577, 628, 676, 693
DdeI CTNAG 2 cut(s) 409, 513
DpnI GATC 2 cut(s) 6, 661
DpnII GATC 2 cut(s) 4, 659
DraIII CACNNNGTG 1 cut(s) 480
EaeI YGGCCR 3 cut(s) 125, 229, 357
EagI CGGCCG 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 181
EclXI CGGCCG 1 cut(s) 229
Eco24I GRGCYC 2 cut(s) 183, 572
Eco47I GGWCC 1 cut(s) 225
Eco52I CGGCCG 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 572
EcoICRI GAGCTC 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 387
EcoT38I GRGCYC 2 cut(s) 183, 572
FaeI CATG 4 cut(s) 103, 436, 654, 705
FaiI YATR 8 cut(s) 101, 124, 399, 434, 652, 666, 703, 725
FaqI GGGAC 1 cut(s) 163
FatI CATG 4 cut(s) 99, 432, 650, 701
FauI CCCGC 4 cut(s) 351, 355, 517, 529
Fnu4HI GCNGC 5 cut(s) 67, 193, 253, 376, 451
FriOI GRGCYC 2 cut(s) 183, 572
Fsp4HI GCNGC 5 cut(s) 67, 193, 253, 376, 451
FspBI CTAG 1 cut(s) 447
GlaI GCGC 3 cut(s) 484, 535, 592
GluI GCNGC 5 cut(s) 67, 193, 253, 376, 451
HaeIII GGCC 5 cut(s) 14, 127, 174, 231, 359
HapII CCGG 9 cut(s) 128, 171, 188, 228, 232, 273, 459, 477, 605
HhaI GCGC 3 cut(s) 485, 536, 593
Hin1II CATG 4 cut(s) 103, 436, 654, 705
Hin6I GCGC 3 cut(s) 483, 534, 591
HinP1I GCGC 3 cut(s) 483, 534, 591
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HpaII CCGG 9 cut(s) 128, 171, 188, 228, 232, 273, 459, 477, 605
Hpy166II GTNNAC 5 cut(s) 366, 415, 474, 628, 699
Hpy188I TCNGA 4 cut(s) 9, 382, 634, 657
Hpy188III TCNNGA 3 cut(s) 81, 100, 526
Hpy8I GTNNAC 5 cut(s) 366, 415, 474, 628, 699
Hpy99I CGWCG 2 cut(s) 625, 683
HpyAV CCTTC 2 cut(s) 739, 747
HpyCH4III ACNGT 5 cut(s) 97, 121, 302, 504, 581
HpyCH4IV ACGT 2 cut(s) 199, 695
HpyCH4V TGCA 9 cut(s) 59, 69, 146, 255, 324, 332, 338, 520, 585
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 557
HpyF3I CTNAG 2 cut(s) 409, 513
HpySE526I ACGT 2 cut(s) 199, 695
Hsp92II CATG 4 cut(s) 103, 436, 654, 705
HspAI GCGC 3 cut(s) 483, 534, 591
Kzo9I GATC 2 cut(s) 4, 659
LmnI GCTCC 6 cut(s) 83, 186, 311, 383, 567, 710
Lsp1109I GCAGC 2 cut(s) 53, 239
LweI GCATC 1 cut(s) 673
MaeI CTAG 1 cut(s) 447
MaeII ACGT 2 cut(s) 199, 695
MalI GATC 2 cut(s) 6, 661
MboI GATC 2 cut(s) 4, 659
MboII GAAGA 1 cut(s) 26
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 183, 509, 572
MluCI AATT 5 cut(s) 48, 132, 369, 424, 463
MluI ACGCGT 1 cut(s) 672
MmeI TCCRAC 2 cut(s) 333, 405
MnlI CCTC 2 cut(s) 42, 550
MslI CAYNNNNRTG 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 9 cut(s) 128, 171, 188, 228, 232, 273, 459, 477, 605
MspR9I CCNGG 5 cut(s) 129, 189, 274, 389, 478
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 389
MvnI CGCG 3 cut(s) 536, 593, 674
MwoI GCNNNNNNNGC 2 cut(s) 356, 557
NciI CCSGG 4 cut(s) 129, 189, 274, 478
NdeII GATC 2 cut(s) 4, 659
NlaIII CATG 4 cut(s) 103, 436, 654, 705
NlaIV GGNNCC 7 cut(s) 283, 307, 379, 444, 457, 506, 569
NmeAIII GCCGAG 1 cut(s) 385
NspI RCATGY 2 cut(s) 654, 705
PagI TCATGA 1 cut(s) 99
PaqCI CACCTGC 1 cut(s) 323
PciI ACATGT 1 cut(s) 701
PcsI WCGNNNNNNNCGW 2 cut(s) 653, 678
PctI GAATGC 1 cut(s) 326
Pfl23II CGTACG 1 cut(s) 675
PkrI GCNGC 5 cut(s) 68, 194, 254, 377, 452
PscI ACATGT 1 cut(s) 701
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 387
PspGI CCWGG 1 cut(s) 387
PspLI CGTACG 1 cut(s) 675
PspN4I GGNNCC 7 cut(s) 283, 307, 379, 444, 457, 506, 569
PspPI GGNCC 1 cut(s) 225
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 4 cut(s) 578, 629, 677, 694
RsaNI GTAC 4 cut(s) 577, 628, 676, 693
RseI CAYNNNNRTG 1 cut(s) 437
SacI GAGCTC 1 cut(s) 183
SatI GCNGC 5 cut(s) 67, 193, 253, 376, 451
Sau3AI GATC 2 cut(s) 4, 659
Sau96I GGNCC 1 cut(s) 225
ScaI AGTACT 1 cut(s) 578
ScrFI CCNGG 5 cut(s) 129, 189, 274, 389, 478
SduI GDGCHC 3 cut(s) 183, 509, 572
SfaNI GCATC 1 cut(s) 673
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 5 cut(s) 48, 132, 369, 424, 463
SsiI CCGC 9 cut(s) 192, 294, 344, 348, 375, 450, 453, 510, 536
SspMI CTAG 1 cut(s) 447
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 5 cut(s) 127, 187, 272, 387, 476
TaaI ACNGT 5 cut(s) 97, 121, 302, 504, 581
TaiI ACGT 2 cut(s) 202, 698
TaqI TCGA 1 cut(s) 244
TasI AATT 5 cut(s) 48, 132, 369, 424, 463
TatI WGTACW 2 cut(s) 576, 627
TauI GCSGC 3 cut(s) 195, 378, 453
TseI GCWGC 2 cut(s) 66, 252
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 1 cut(s) 132
XceI RCATGY 2 cut(s) 654, 705
XspI CTAG 1 cut(s) 447
ZrmI AGTACT 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.