Rh6BG470000

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010716
Physical Location & Seq
Reverse (-)
67806573 .. 67808473
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG470000.1

Sequence Viewer

Length: 1104 bp
ATGTCGATCTTTCGTTGTCCTCTACAAATCATTCTCATTGTTTCGCTCATTAGTTTTCAAACCAGCGTTAATTCGACAACTTTTACATTCACAAACAGGTGCGATTACACTGTTTATCCAGGAACTCTAGCCGGTTCATCCAGCCCTAGACTAGAAAGCACCGGATTCCAGCTCCAACCCGGCGAGTCTCGCTCCCTTCAAGCCCCACCAAGCTGGTCCGGCAGGTTCTGGGGTCGAACCGGTTGCAACTTCGACCCCGTCACCGGCCAGGGCTCTTGCACCACCGCCGACTGCGGCTCCAACCAACTCGAGTGCAACGGCGCCGGTGCAGTCCCTCCCGCCACTCTCGCCGAGTTCACAATCGGCTCGGGTGATGCAAAGGACTTCTACGACGTCAGCCTGGTCGATGGCTTCAACTTGCCTATGCTGGTCGAAACGAGCGGCGGCTCCGGTGACTGTTCTTCAACCGGGTGCGCGGTGAACTTGAATAAGGGATGTCCGAGTGAGCTGCAGTTCGAAGGCGGGGCGGGGTGTAGAAGCGCGTGCGAGGCTTTTCAGACGCCGGAGTACTGCTGCAGCGGCGCGTATGGCTCACCGTCGACATGTAAGCCGTCGGTTTACTCGCAGATGTTTAAGGCGGCGTGTCCGACGGCGTATAGCTATGCGTACGATGATGGCACGAGTACGTTCACGTGTAGTGGAGCTGATTACATCATAACATTCTGCCCCTCATCTACAACAAGTCTTAAATCTTCAACACCAACAACTTCAACACTTCCAACATCACCAACAACGACAACGACACCGCCCACGCCAACAACGACGGTAACACCGCCGATGCCGACACAAACAGCACCATCAGTATCACCTCCAACAATGACACCACCAAGGCCAACGACGACGGTAACACCGCCACCGCCAACAGGGACAACGGCGACACCAACAGCAACGGCAACACCAACGAGGGCAACAGATGGGACCGGAGGTGGATATGTCATGGATTATTTTGGTTCATCGCCGAGTTTTAGTGGTGACGCATCCAAGACACTTGCTTCTATTGCCATGGCTGCTTCTTCTGTTTTGTTTTATTTTCTATTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

367

Amino Acids

37.88

Weight (kDa)

4.5

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 32 - 243 3.6e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180
fragaria_vesca FvH4_2g38310
malus_domestica MD08G1011400.v1.1
prunus_persica Prupe.1G364000_v2.0.a1
pyrus_communis pycom08g01000
rosa_chinensis RchiOBHm_Chr6g0303061
rosa_laevigata RLG00000011112
rosa_multiflora Rmu_ssc0000460.1_g000033
rosa_roxburghii Rroxscaffold_7G00165070
rosa_rugosa Rorug06G0319100
rosa_samantha Rh6AG432600 Rh6BG470000 Rh6CG445000 Rh6DG431800
rosa_wichuraiana Rw6G037500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 396
Acc36I ACCTGC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 441
AccI GTMKAC 1 cut(s) 599
AccII CGCG 3 cut(s) 476, 542, 584
AcoI YGGCCR 1 cut(s) 265
AcvI CACGTG 1 cut(s) 693
AcyI GRCGYC 3 cut(s) 321, 393, 560
AfaI GTAC 3 cut(s) 569, 668, 685
AfiI CCNNNNNNNGG 2 cut(s) 263, 923
AflIII ACRYGT 2 cut(s) 602, 692
AgeI ACCGGT 1 cut(s) 239
AgsI TTSAA 7 cut(s) 59, 200, 415, 465, 487, 756, 771
AjnI CCWGG 3 cut(s) 118, 267, 399
AluBI AGCT 5 cut(s) 172, 213, 508, 660, 704
AluI AGCT 5 cut(s) 172, 213, 508, 660, 704
Alw26I GTCTC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 228
Ama87I CYCGRG 2 cut(s) 308, 367
AoxI GGCC 2 cut(s) 265, 890
ApeKI GCWGC 4 cut(s) 508, 573, 576, 1067
AsiGI ACCGGT 1 cut(s) 239
AspLEI GCGC 4 cut(s) 323, 476, 542, 584
AspS9I GGNCC 2 cut(s) 216, 978
AsuC2I CCSGG 2 cut(s) 180, 469
AsuHPI GGTGA 8 cut(s) 253, 383, 464, 490, 585, 777, 858, 1043
AsuII TTCGAA 1 cut(s) 516
AvaI CYCGRG 2 cut(s) 308, 367
AvaII GGWCC 2 cut(s) 216, 978
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 275
BauI CACGAG 1 cut(s) 679
BbrPI CACGTG 1 cut(s) 693
BbvI GCAGC 4 cut(s) 495, 560, 588, 1054
BccI CCATC 4 cut(s) 401, 668, 865, 968
BceAI ACGGC 5 cut(s) 334, 595, 666, 948, 966
BcgI CGANNNNNNTGC 4 cut(s) 225, 259, 490, 524
BciT130I CCWGG 3 cut(s) 120, 269, 401
BcnI CCSGG 2 cut(s) 180, 469
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 3 cut(s) 128, 147, 152
BfmI CTRYAG 2 cut(s) 509, 574
BfoI RGCGCY 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 213
BisI GCNGC 9 cut(s) 295, 442, 445, 509, 574, 577, 580, 639, 1068
BlsI GCNGC 9 cut(s) 296, 443, 446, 510, 575, 578, 581, 640, 1069
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 5 cut(s) 120, 180, 269, 401, 469
Bme18I GGWCC 2 cut(s) 216, 978
BmeT110I CYCGRG 2 cut(s) 308, 367
BmgT120I GGNCC 2 cut(s) 216, 978
BmiI GGNNCC 4 cut(s) 298, 322, 448, 979
BmrFI CCNGG 5 cut(s) 120, 180, 269, 401, 469
BmsI GCATC 3 cut(s) 364, 828, 1046
BplI GAGNNNNNCTC 2 cut(s) 176, 208
Bpu14I TTCGAA 1 cut(s) 516
BpuMI CCSGG 2 cut(s) 180, 469
BsaAI YACGTR 1 cut(s) 693
BsaHI GRCGYC 3 cut(s) 321, 393, 560
BsaJI CCNNGG 3 cut(s) 268, 887, 1062
BsaWI WCCGGW 4 cut(s) 161, 239, 449, 980
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 923
Bse118I RCCGGY 4 cut(s) 131, 239, 263, 323
BseBI CCWGG 3 cut(s) 120, 269, 401
BseDI CCNNGG 3 cut(s) 268, 887, 1062
BseGI GGATG 3 cut(s) 137, 500, 1037
BseLI CCNNNNNNNGG 2 cut(s) 263, 923
BseXI GCAGC 4 cut(s) 495, 560, 588, 1054
BsgI GTGCAG 1 cut(s) 348
Bsh1236I CGCG 3 cut(s) 476, 542, 584
BshFI GGCC 2 cut(s) 267, 892
BshNI GGYRCC 1 cut(s) 320
BshTI ACCGGT 1 cut(s) 239
BsiHKCI CYCGRG 2 cut(s) 308, 367
BsiWI CGTACG 1 cut(s) 666
BslFI GGGAC 3 cut(s) 317, 940, 991
BslI CCNNNNNNNGG 2 cut(s) 263, 923
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 3 cut(s) 317, 940, 991
BsnI GGCC 2 cut(s) 267, 892
BsoBI CYCGRG 2 cut(s) 308, 367
Bsp119I TTCGAA 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 1062
BspANI GGCC 2 cut(s) 267, 892
BspFNI CGCG 3 cut(s) 476, 542, 584
BspLI GGNNCC 4 cut(s) 298, 322, 448, 979
BspMAI CTGCAG 2 cut(s) 513, 578
BspMI ACCTGC 1 cut(s) 213
BspT104I TTCGAA 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 320
BsrBI CCGCTC 1 cut(s) 441
BsrFI RCCGGY 4 cut(s) 131, 239, 263, 323
BssAI RCCGGY 4 cut(s) 131, 239, 263, 323
BssECI CCNNGG 3 cut(s) 268, 887, 1062
BssMI GATC 1 cut(s) 6
BssNI GRCGYC 3 cut(s) 321, 393, 560
BssSI CACGAG 1 cut(s) 679
BssT1I CCWWGG 2 cut(s) 887, 1062
Bst2BI CACGAG 1 cut(s) 679
Bst2UI CCWGG 3 cut(s) 120, 269, 401
Bst4CI ACNGT 5 cut(s) 112, 458, 597, 826, 904
BstACI GRCGYC 3 cut(s) 321, 393, 560
BstBAI YACGTR 1 cut(s) 693
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 544
BstDSI CCRYGG 1 cut(s) 1062
BstF5I GGATG 3 cut(s) 137, 500, 1037
BstFNI CGCG 3 cut(s) 476, 542, 584
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 4 cut(s) 323, 476, 542, 584
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 8 cut(s) 189, 219, 347, 548, 579, 588, 1058, 1067
BstNI CCWGG 3 cut(s) 120, 269, 401
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 5 cut(s) 118, 178, 267, 399, 467
BstSFI CTRYAG 2 cut(s) 509, 574
BstUI CGCG 3 cut(s) 476, 542, 584
BstV1I GCAGC 4 cut(s) 495, 560, 588, 1054
BstXI CCANNNNNNTGG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 267, 892
BtgI CCRYGG 1 cut(s) 1062
BtgZI GCGATG 1 cut(s) 999
BtsCI GGATG 3 cut(s) 137, 500, 1037
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 544
CaiI CAGNNNCTG 1 cut(s) 228
CfoI GCGC 4 cut(s) 323, 476, 542, 584
Cfr10I RCCGGY 4 cut(s) 131, 239, 263, 323
Cfr13I GGNCC 2 cut(s) 216, 978
CseI GACGC 2 cut(s) 568, 1043
Csp6I GTAC 3 cut(s) 568, 667, 684
CspAI ACCGGT 1 cut(s) 239
CviAII CATG 3 cut(s) 603, 997, 1063
CviQI GTAC 3 cut(s) 568, 667, 684
DinI GGCGCC 1 cut(s) 322
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
EaeI YGGCCR 1 cut(s) 265
Eco130I CCWWGG 2 cut(s) 887, 1062
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 2 cut(s) 216, 978
Eco72I CACGTG 1 cut(s) 693
Eco88I CYCGRG 2 cut(s) 308, 367
EcoRII CCWGG 3 cut(s) 118, 267, 399
EcoT14I CCWWGG 2 cut(s) 887, 1062
EcoT38I GRGCYC 1 cut(s) 275
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 2 cut(s) 887, 1062
FaeI CATG 3 cut(s) 606, 1000, 1066
FaiI YATR 9 cut(s) 425, 588, 604, 657, 663, 716, 993, 998, 1064
FaqI GGGAC 3 cut(s) 317, 940, 991
FatI CATG 3 cut(s) 602, 996, 1062
FauI CCCGC 3 cut(s) 346, 515, 520
FblI GTMKAC 1 cut(s) 599
Fnu4HI GCNGC 9 cut(s) 295, 442, 445, 509, 574, 577, 580, 639, 1068
FokI GGATG 3 cut(s) 124, 507, 1024
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 9 cut(s) 295, 442, 445, 509, 574, 577, 580, 639, 1068
FspBI CTAG 3 cut(s) 128, 147, 152
GlaI GCGC 4 cut(s) 322, 475, 541, 583
GluI GCNGC 9 cut(s) 295, 442, 445, 509, 574, 577, 580, 639, 1068
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 2 cut(s) 267, 892
HgaI GACGC 2 cut(s) 568, 1043
HhaI GCGC 4 cut(s) 323, 476, 542, 584
Hin1I GRCGYC 3 cut(s) 321, 393, 560
Hin1II CATG 3 cut(s) 606, 1000, 1066
Hin6I GCGC 4 cut(s) 321, 474, 540, 582
HinP1I GCGC 4 cut(s) 321, 474, 540, 582
HincII GTYRAC 1 cut(s) 600
HindII GTYRAC 1 cut(s) 600
HinfI GANTC 2 cut(s) 165, 185
HphI GGTGA 8 cut(s) 253, 383, 464, 490, 585, 777, 858, 1043
Hpy166II GTNNAC 5 cut(s) 357, 481, 600, 619, 690
Hpy188I TCNGA 3 cut(s) 501, 558, 648
Hpy8I GTNNAC 5 cut(s) 357, 481, 600, 619, 690
Hpy99I CGWCG 7 cut(s) 395, 601, 616, 652, 826, 901, 904
HpyAV CCTTC 2 cut(s) 206, 512
HpyCH4III ACNGT 5 cut(s) 112, 458, 597, 826, 904
HpyCH4IV ACGT 3 cut(s) 393, 686, 692
HpyCH4V TGCA 7 cut(s) 246, 279, 315, 329, 377, 511, 576
HpyF10VI GCNNNNNNNGC 8 cut(s) 189, 219, 347, 548, 579, 588, 1058, 1067
HpySE526I ACGT 3 cut(s) 393, 686, 692
Hsp92I GRCGYC 3 cut(s) 321, 393, 560
Hsp92II CATG 3 cut(s) 606, 1000, 1066
HspAI GCGC 4 cut(s) 321, 474, 540, 582
KasI GGCGCC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 5 cut(s) 177, 197, 302, 452, 701
Lsp1109I GCAGC 4 cut(s) 495, 560, 588, 1054
LweI GCATC 3 cut(s) 364, 828, 1046
MaeI CTAG 3 cut(s) 128, 147, 152
MaeII ACGT 3 cut(s) 393, 686, 692
MaeIII GTNAC 5 cut(s) 259, 452, 826, 904, 1031
MalI GATC 1 cut(s) 8
MbiI CCGCTC 1 cut(s) 441
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 453, 744, 1065
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 1 cut(s) 70
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 5 cut(s) 199, 324, 671, 803, 896
MnlI CCTC 7 cut(s) 30, 345, 541, 739, 879, 957, 977
MseI TTAA 3 cut(s) 69, 633, 747
MspA1I CMGCKG 1 cut(s) 579
MspR9I CCNGG 5 cut(s) 120, 180, 269, 401, 469
MvaI CCWGG 3 cut(s) 120, 269, 401
MvnI CGCG 3 cut(s) 476, 542, 584
MwoI GCNNNNNNNGC 8 cut(s) 189, 219, 347, 548, 579, 588, 1058, 1067
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 2 cut(s) 180, 469
NcoI CCATGG 1 cut(s) 1062
NdeII GATC 1 cut(s) 6
NlaIII CATG 3 cut(s) 606, 1000, 1066
NlaIV GGNNCC 4 cut(s) 298, 322, 448, 979
NmeAIII GCCGAG 2 cut(s) 376, 1044
NmuCI GTSAC 3 cut(s) 259, 452, 1031
NspI RCATGY 1 cut(s) 606
NspV TTCGAA 1 cut(s) 516
PaeR7I CTCGAG 1 cut(s) 308
PciI ACATGT 1 cut(s) 602
PcsI WCGNNNNNNNCGW 1 cut(s) 818
PfeI GAWTC 1 cut(s) 165
Pfl23II CGTACG 1 cut(s) 666
PflFI GACNNNGTC 1 cut(s) 257
PfoI TCCNGGA 1 cut(s) 118
PinAI ACCGGT 1 cut(s) 239
PkrI GCNGC 9 cut(s) 296, 443, 446, 510, 575, 578, 581, 640, 1069
PleI GAGTC 1 cut(s) 193
PluTI GGCGCC 1 cut(s) 324
PmaCI CACGTG 1 cut(s) 693
PmlI CACGTG 1 cut(s) 693
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 693
PscI ACATGT 1 cut(s) 602
Psp6I CCWGG 3 cut(s) 118, 267, 399
PspCI CACGTG 1 cut(s) 693
PspGI CCWGG 3 cut(s) 118, 267, 399
PspLI CGTACG 1 cut(s) 666
PspN4I GGNNCC 4 cut(s) 298, 322, 448, 979
PspPI GGNCC 2 cut(s) 216, 978
PspXI VCTCGAGB 1 cut(s) 308
PstI CTGCAG 2 cut(s) 513, 578
PstNI CAGNNNCTG 1 cut(s) 228
PsyI GACNNNGTC 1 cut(s) 257
RsaI GTAC 3 cut(s) 569, 668, 685
RsaNI GTAC 3 cut(s) 568, 667, 684
SalI GTCGAC 1 cut(s) 598
SaqAI TTAA 3 cut(s) 69, 633, 747
SatI GCNGC 9 cut(s) 295, 442, 445, 509, 574, 577, 580, 639, 1068
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 216, 978
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 5 cut(s) 120, 180, 269, 401, 469
SduI GDGCHC 1 cut(s) 275
SfaNI GCATC 3 cut(s) 364, 828, 1046
SfcI CTRYAG 2 cut(s) 509, 574
SfoI GGCGCC 1 cut(s) 322
Sfr274I CTCGAG 1 cut(s) 308
SfuI TTCGAA 1 cut(s) 516
SgrAI CRCCGGYG 1 cut(s) 323
SinI GGWCC 2 cut(s) 216, 978
SlaI CTCGAG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 70
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 3 cut(s) 128, 147, 152
StyD4I CCNGG 5 cut(s) 118, 178, 267, 399, 467
StyI CCWWGG 2 cut(s) 887, 1062
TaaI ACNGT 5 cut(s) 112, 458, 597, 826, 904
TaiI ACGT 3 cut(s) 396, 689, 695
TaqI TCGA 9 cut(s) 5, 74, 235, 252, 309, 405, 432, 516, 599
TasI AATT 1 cut(s) 70
TatI WGTACW 1 cut(s) 567
TauI GCSGC 5 cut(s) 297, 444, 447, 582, 641
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 3 cut(s) 69, 633, 747
Tru9I TTAA 3 cut(s) 69, 633, 747
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 3 cut(s) 259, 452, 1031
TseI GCWGC 4 cut(s) 508, 573, 576, 1067
Tsp45I GTSAC 3 cut(s) 259, 452, 1031
TspDTI ATGAA 2 cut(s) 126, 1002
TspRI CASTG 1 cut(s) 115
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 2 cut(s) 216, 978
XceI RCATGY 1 cut(s) 606
XhoI CTCGAG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 599
XspI CTAG 3 cut(s) 128, 147, 152
ZraI GACGTC 1 cut(s) 394
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.