FvH4_2g38310

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010716
Physical Location & Seq
Reverse (-)
27738298 .. 27740679
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38310.t1

Sequence Viewer

Length: 1092 bp
ATGTCGATCTCGATCTTCCGTTCCCCTCTACATATCATTCTCATTGTTTTGCTCATAAGTTGTGTAACCAGCGTTAATTCGACAACTTTTACATTCATAAACAGGTGCGATTACGCTGTTTATCCCGGAACTCTCTCCGGTTCCTCCAGCCCTCCACTAGAAACCACCGGATTCCAGCTCCAGCCCGGCGAGTCTCGCTCACTTCAAGCCCCACCAAGCTGGTCCGGCAGGTTCTGGGGCCGAACCGGTTGCAACTTCGACCCCACCACCGGCCAAGGCTCCTGCACCAGCGCCGACTGCGGCTCCAACCAACTCCAGTGCAACGGTGCCGGTGCAATCCCTCCCGCCACTCTCGCCGAGTTCACAATCGGTTCCGGTGATACAAAAGACTTCTATGACGTCAGCCTAGTTGATGGCTTCAACTTGCCTATGCTGGTCGAACCGAGCGGTGGCTCCGGTGACTGTTCTATTACCGGGTGCTCGGTGAACTTGAACAAGGGATGTCCTAGTGAGTTACAGTTCGGAGGCGGTGCCGGGTGTAGGAGCGCCTGCGAGGCTTTTCAGACGCCGGAGTACTGCTGCAGCGGAGCGTATGGCTCACCTTCGACGTGTAAGCCGTCCGTTTACTCGCAGATGTTTAAGGCGGCGTGTCCGACGGCGTATAGCTATGCGTACGATGATGGCACCAGTACGTTCACATGCAGTGGAGCTGATTACGCCATAACATTCTGCCCTTCGTCCACAACGAGTCAAAAAACGTCAACACAATCACTAACACCACCAACAACGTCAACACAACCAACGCCAGTAACAACGACGGTGACACCTCCGCCGCCGCCAACAGAAACACCGGCGACACCAACAGCGCCGGCAACGCCAACGAGGGCAACGGATGGGAGTGGAGGCGGATACACCATGGATTATTTTGGCTCGTCACCGAGTTTTAGTAGTGACGCATCCAAGGGCGCCCTTGCTTCTATTGCAATGGCTGCTTCATCAATCTTGTTTTATTTTCTATTGTCACCGGAGCTATATATACTCATCGCCAAGTTGTTGGTTAGATCAATCACAATTTTGAGCAGACTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

364

Amino Acids

37.68

Weight (kDa)

4.68

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 34 - 245 7.9e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180
fragaria_vesca FvH4_2g38310
malus_domestica MD08G1011400.v1.1
prunus_persica Prupe.1G364000_v2.0.a1
pyrus_communis pycom08g01000
rosa_chinensis RchiOBHm_Chr6g0303061
rosa_laevigata RLG00000011112
rosa_multiflora Rmu_ssc0000460.1_g000033
rosa_roxburghii Rroxscaffold_7G00165070
rosa_rugosa Rorug06G0319100
rosa_samantha Rh6AG432600 Rh6BG470000 Rh6CG445000 Rh6DG431800
rosa_wichuraiana Rw6G037500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 402
Acc36I ACCTGC 1 cut(s) 219
AccB1I GGYRCC 4 cut(s) 326, 530, 683, 965
AccBSI CCGCTC 1 cut(s) 447
AcoI YGGCCR 1 cut(s) 271
AcyI GRCGYC 3 cut(s) 399, 566, 966
AfaI GTAC 3 cut(s) 575, 674, 691
AfiI CCNNNNNNNGG 3 cut(s) 269, 449, 540
AflIII ACRYGT 1 cut(s) 608
AgeI ACCGGT 1 cut(s) 245
AgsI TTSAA 3 cut(s) 206, 421, 493
AjiI CACGTC 1 cut(s) 609
AluBI AGCT 5 cut(s) 178, 219, 666, 710, 1030
AluI AGCT 5 cut(s) 178, 219, 666, 710, 1030
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 234
AoxI GGCC 2 cut(s) 238, 271
ApeKI GCWGC 3 cut(s) 579, 582, 989
AsiGI ACCGGT 1 cut(s) 245
AspLEI GCGC 4 cut(s) 293, 548, 868, 968
AspS9I GGNCC 2 cut(s) 222, 238
AsuC2I CCSGG 4 cut(s) 126, 186, 475, 535
AsuHPI GGTGA 7 cut(s) 389, 470, 496, 591, 832, 927, 1014
AvaII GGWCC 1 cut(s) 222
BanI GGYRCC 4 cut(s) 326, 530, 683, 965
Bbv12I GWGCWC 1 cut(s) 482
BbvI GCAGC 3 cut(s) 566, 594, 976
BccI CCATC 3 cut(s) 407, 674, 887
BceAI ACGGC 2 cut(s) 601, 672
BcgI CGANNNNNNTGC 2 cut(s) 231, 265
BciVI GTATCC 1 cut(s) 902
BcnI CCSGG 4 cut(s) 126, 186, 475, 535
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 3 cut(s) 158, 407, 507
BfmI CTRYAG 1 cut(s) 580
BfoI RGCGCY 4 cut(s) 294, 549, 869, 969
BfuAI ACCTGC 1 cut(s) 219
BfuI GTATCC 1 cut(s) 902
BglI GCCNNNNNGGC 1 cut(s) 554
BisI GCNGC 7 cut(s) 301, 580, 583, 645, 833, 836, 990
BlsI GCNGC 7 cut(s) 302, 581, 584, 646, 834, 837, 991
BmcAI AGTACT 1 cut(s) 575
Bme1390I CCNGG 4 cut(s) 126, 186, 475, 535
Bme18I GGWCC 1 cut(s) 222
BmgBI CACGTC 1 cut(s) 609
BmgT120I GGNCC 2 cut(s) 222, 238
BmrFI CCNGG 4 cut(s) 126, 186, 475, 535
BmsI GCATC 1 cut(s) 965
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BpmI CTGGAG 3 cut(s) 130, 164, 299
BpuMI CCSGG 4 cut(s) 126, 186, 475, 535
BsaBI GATNNNNATC 1 cut(s) 11
BsaHI GRCGYC 3 cut(s) 399, 566, 966
BsaJI CCNNGG 3 cut(s) 274, 915, 960
BsaWI WCCGGW 6 cut(s) 137, 167, 245, 374, 455, 1024
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 449, 540
Bse118I RCCGGY 5 cut(s) 245, 269, 329, 850, 868
Bse1I ACTGG 3 cut(s) 316, 687, 806
Bse3DI GCAATG 1 cut(s) 990
Bse8I GATNNNNATC 1 cut(s) 11
BseDI CCNNGG 3 cut(s) 274, 915, 960
BseGI GGATG 3 cut(s) 506, 898, 956
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 3 cut(s) 269, 449, 540
BseMI GCAATG 1 cut(s) 990
BseNI ACTGG 3 cut(s) 316, 687, 806
BseXI GCAGC 3 cut(s) 566, 594, 976
BsgI GTGCAG 1 cut(s) 268
BshFI GGCC 2 cut(s) 240, 273
BshNI GGYRCC 4 cut(s) 326, 530, 683, 965
BshTI ACCGGT 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 482
BsiWI CGTACG 1 cut(s) 672
BslI CCNNNNNNNGG 3 cut(s) 269, 449, 540
BsmAI GTCTC 1 cut(s) 198
BsnI GGCC 2 cut(s) 240, 273
Bsp1286I GDGCHC 1 cut(s) 482
Bsp143I GATC 3 cut(s) 6, 12, 1061
Bsp19I CCATGG 1 cut(s) 915
BspANI GGCC 2 cut(s) 240, 273
BspMAI CTGCAG 1 cut(s) 584
BspMI ACCTGC 1 cut(s) 219
BspT107I GGYRCC 4 cut(s) 326, 530, 683, 965
BsrBI CCGCTC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 990
BsrFI RCCGGY 5 cut(s) 245, 269, 329, 850, 868
BsrI ACTGG 3 cut(s) 316, 687, 806
BssAI RCCGGY 5 cut(s) 245, 269, 329, 850, 868
BssECI CCNNGG 3 cut(s) 274, 915, 960
BssMI GATC 3 cut(s) 6, 12, 1061
BssNI GRCGYC 3 cut(s) 399, 566, 966
BssT1I CCWWGG 3 cut(s) 274, 915, 960
Bst4CI ACNGT 4 cut(s) 326, 464, 519, 820
BstACI GRCGYC 3 cut(s) 399, 566, 966
BstAPI GCANNNNNTGC 1 cut(s) 989
BstC8I GCNNGC 2 cut(s) 550, 870
BstDSI CCRYGG 1 cut(s) 915
BstF5I GGATG 3 cut(s) 506, 898, 956
BstH2I RGCGCY 4 cut(s) 294, 549, 869, 969
BstHHI GCGC 4 cut(s) 293, 548, 868, 968
BstKTI GATC 3 cut(s) 9, 15, 1064
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 3 cut(s) 6, 12, 1061
BstMWI GCNNNNNNNGC 9 cut(s) 195, 225, 297, 353, 554, 716, 874, 980, 989
BstNSI RCATGY 1 cut(s) 702
BstSCI CCNGG 4 cut(s) 124, 184, 473, 533
BstSFI CTRYAG 1 cut(s) 580
BstV1I GCAGC 3 cut(s) 566, 594, 976
BstXI CCANNNNNNTGG 2 cut(s) 219, 1054
BsuI GTATCC 1 cut(s) 902
BsuRI GGCC 2 cut(s) 240, 273
BtgI CCRYGG 1 cut(s) 915
BtgZI GCGATG 1 cut(s) 1027
BtrI CACGTC 1 cut(s) 609
BtsCI GGATG 3 cut(s) 506, 898, 956
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 2 cut(s) 323, 709
BveI ACCTGC 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 550, 870
CaiI CAGNNNCTG 1 cut(s) 234
CfoI GCGC 4 cut(s) 293, 548, 868, 968
Cfr10I RCCGGY 5 cut(s) 245, 269, 329, 850, 868
Cfr13I GGNCC 2 cut(s) 222, 238
CseI GACGC 2 cut(s) 574, 962
Csp6I GTAC 3 cut(s) 574, 673, 690
CspAI ACCGGT 1 cut(s) 245
CviAII CATG 2 cut(s) 699, 916
CviQI GTAC 3 cut(s) 574, 673, 690
DinI GGCGCC 1 cut(s) 967
DpnI GATC 3 cut(s) 8, 14, 1063
DpnII GATC 3 cut(s) 6, 12, 1061
EaeI YGGCCR 1 cut(s) 271
EciI GGCGGA 2 cut(s) 819, 921
Eco130I CCWWGG 3 cut(s) 274, 915, 960
Eco47I GGWCC 1 cut(s) 222
EcoT14I CCWWGG 3 cut(s) 274, 915, 960
EgeI GGCGCC 1 cut(s) 967
EheI GGCGCC 1 cut(s) 967
ErhI CCWWGG 3 cut(s) 274, 915, 960
FaeI CATG 2 cut(s) 702, 919
FatI CATG 2 cut(s) 698, 915
FauI CCCGC 1 cut(s) 352
Fnu4HI GCNGC 7 cut(s) 301, 580, 583, 645, 833, 836, 990
FokI GGATG 3 cut(s) 513, 905, 943
Fsp4HI GCNGC 7 cut(s) 301, 580, 583, 645, 833, 836, 990
FspBI CTAG 3 cut(s) 158, 407, 507
GlaI GCGC 4 cut(s) 292, 547, 867, 967
GluI GCNGC 7 cut(s) 301, 580, 583, 645, 833, 836, 990
GsuI CTGGAG 3 cut(s) 130, 164, 299
HaeII RGCGCY 4 cut(s) 294, 549, 869, 969
HaeIII GGCC 2 cut(s) 240, 273
HgaI GACGC 2 cut(s) 574, 962
HhaI GCGC 4 cut(s) 293, 548, 868, 968
Hin1I GRCGYC 3 cut(s) 399, 566, 966
Hin1II CATG 2 cut(s) 702, 919
Hin6I GCGC 4 cut(s) 291, 546, 866, 966
HinP1I GCGC 4 cut(s) 291, 546, 866, 966
HincII GTYRAC 2 cut(s) 762, 792
HindII GTYRAC 2 cut(s) 762, 792
HinfI GANTC 3 cut(s) 171, 191, 748
HphI GGTGA 7 cut(s) 389, 470, 496, 591, 832, 927, 1014
Hpy166II GTNNAC 7 cut(s) 363, 487, 625, 696, 741, 762, 792
Hpy188I TCNGA 4 cut(s) 524, 564, 654, 1091
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 7 cut(s) 363, 487, 625, 696, 741, 762, 792
Hpy99I CGWCG 3 cut(s) 610, 658, 820
HpyAV CCTTC 2 cut(s) 612, 744
HpyCH4III ACNGT 4 cut(s) 326, 464, 519, 820
HpyCH4IV ACGT 5 cut(s) 399, 608, 692, 758, 788
HpyCH4V TGCA 7 cut(s) 252, 285, 321, 335, 582, 702, 983
HpyF10VI GCNNNNNNNGC 9 cut(s) 195, 225, 297, 353, 554, 716, 874, 980, 989
HpySE526I ACGT 5 cut(s) 399, 608, 692, 758, 788
Hsp92I GRCGYC 3 cut(s) 399, 566, 966
Hsp92II CATG 2 cut(s) 702, 919
HspAI GCGC 4 cut(s) 291, 546, 866, 966
KasI GGCGCC 1 cut(s) 965
KroI GCCGGC 1 cut(s) 868
KroNI GCCGGC 1 cut(s) 870
Kzo9I GATC 3 cut(s) 6, 12, 1061
LmnI GCTCC 8 cut(s) 183, 284, 308, 458, 543, 587, 707, 1027
Lsp1109I GCAGC 3 cut(s) 566, 594, 976
LweI GCATC 1 cut(s) 965
MaeI CTAG 3 cut(s) 158, 407, 507
MaeII ACGT 5 cut(s) 399, 608, 692, 758, 788
MaeIII GTNAC 8 cut(s) 64, 458, 513, 808, 820, 933, 950, 1020
MalI GATC 3 cut(s) 8, 14, 1063
MbiI CCGCTC 1 cut(s) 447
MboI GATC 3 cut(s) 6, 12, 1061
MboII GAAGA 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 2 cut(s) 76, 1071
Mly113I GGCGCC 1 cut(s) 966
MlyI GAGTC 2 cut(s) 200, 757
MmeI TCCRAC 2 cut(s) 330, 677
MnlI CCTC 9 cut(s) 36, 154, 162, 351, 518, 547, 837, 876, 896
MroNI GCCGGC 1 cut(s) 868
MseI TTAA 2 cut(s) 75, 639
MspA1I CMGCKG 1 cut(s) 585
MspR9I CCNGG 4 cut(s) 126, 186, 475, 535
MwoI GCNNNNNNNGC 9 cut(s) 195, 225, 297, 353, 554, 716, 874, 980, 989
NaeI GCCGGC 1 cut(s) 870
NarI GGCGCC 1 cut(s) 966
NciI CCSGG 4 cut(s) 126, 186, 475, 535
NcoI CCATGG 1 cut(s) 915
NdeII GATC 3 cut(s) 6, 12, 1061
NgoMIV GCCGGC 1 cut(s) 868
NlaIII CATG 2 cut(s) 702, 919
NmeAIII GCCGAG 1 cut(s) 382
NmuCI GTSAC 5 cut(s) 458, 820, 933, 950, 1020
NspI RCATGY 1 cut(s) 702
PcsI WCGNNNNNNNCGW 2 cut(s) 614, 743
PdiI GCCGGC 1 cut(s) 870
PfeI GAWTC 1 cut(s) 171
Pfl23II CGTACG 1 cut(s) 672
PfoI TCCNGGA 1 cut(s) 124
PinAI ACCGGT 1 cut(s) 245
PkrI GCNGC 7 cut(s) 302, 581, 584, 646, 834, 837, 991
PleI GAGTC 2 cut(s) 199, 756
PluTI GGCGCC 1 cut(s) 969
PpsI GAGTC 2 cut(s) 199, 756
PspLI CGTACG 1 cut(s) 672
PspPI GGNCC 2 cut(s) 222, 238
PstI CTGCAG 1 cut(s) 584
PstNI CAGNNNCTG 1 cut(s) 234
RsaI GTAC 3 cut(s) 575, 674, 691
RsaNI GTAC 3 cut(s) 574, 673, 690
SaqAI TTAA 2 cut(s) 75, 639
SatI GCNGC 7 cut(s) 301, 580, 583, 645, 833, 836, 990
Sau3AI GATC 3 cut(s) 6, 12, 1061
Sau96I GGNCC 2 cut(s) 222, 238
ScaI AGTACT 1 cut(s) 575
SchI GAGTC 2 cut(s) 200, 757
ScrFI CCNGG 4 cut(s) 126, 186, 475, 535
SduI GDGCHC 1 cut(s) 482
SfaNI GCATC 1 cut(s) 965
SfcI CTRYAG 1 cut(s) 580
SfoI GGCGCC 1 cut(s) 967
SgrAI CRCCGGYG 1 cut(s) 850
SinI GGWCC 1 cut(s) 222
Sse9I AATT 2 cut(s) 76, 1071
SspDI GGCGCC 1 cut(s) 965
SspMI CTAG 3 cut(s) 158, 407, 507
StyD4I CCNGG 4 cut(s) 124, 184, 473, 533
StyI CCWWGG 3 cut(s) 274, 915, 960
TaaI ACNGT 4 cut(s) 326, 464, 519, 820
TaiI ACGT 5 cut(s) 402, 611, 695, 761, 791
TaqI TCGA 6 cut(s) 5, 11, 80, 258, 438, 605
TasI AATT 2 cut(s) 76, 1071
TatI WGTACW 1 cut(s) 573
TauI GCSGC 4 cut(s) 303, 647, 835, 838
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 2 cut(s) 75, 639
Tru9I TTAA 2 cut(s) 75, 639
TscAI CASTG 2 cut(s) 323, 709
TseFI GTSAC 5 cut(s) 458, 820, 933, 950, 1020
TseI GCWGC 3 cut(s) 579, 582, 989
Tsp45I GTSAC 5 cut(s) 458, 820, 933, 950, 1020
TspDTI ATGAA 2 cut(s) 85, 984
TspGWI ACGGA 3 cut(s) 8, 610, 905
TspRI CASTG 2 cut(s) 323, 709
VpaK11BI GGWCC 1 cut(s) 222
XceI RCATGY 1 cut(s) 702
XspI CTAG 3 cut(s) 158, 407, 507
ZraI GACGTC 1 cut(s) 400
ZrmI AGTACT 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.