RchiOBHm_Chr6g0303061

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010716
Physical Location & Seq
Forward (+)
62932530 .. 62933649
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27223

Sequence Viewer

Length: 1077 bp
ATGTCGATCTTTCGTTGCCCTCTACAAATCATTCTCATTGTTTCGCTCATTAGTTTTCAAACCAGCGTTAATTCGACAACTTTTACATTCACAAACAGGTGCGATTACACTGTTTATCCCGGAACTCTAGCCGGTTCATCCAGCCCTAGACTAGAAAGCACCGGATTCCAGCTCCAACCCGGCGAGTCTCGCTCCCTTCAAGCCCCACCAAGCTGGTCCGGCAGGTTCTGGGGTCGAACCGGTTGCAACTTCGACCCCGTCACAGGCCAGGGCTCCTGCACCACCGCCGACTGCGGCTCCAACCAACTCGAGTGCAACGGCGCCGGTGCAGTCCCTCCCGCCACTCTCGCCGAGTTCACAATCGGCTCGGGTGATGCAAAGGACTTCTACGACGTCAGCCTGGTCGATGGCTTCAACTTGCCTATGCTGGTCGAACCGAGCGGCGGCTCCGGTGACTGTTCTTCAACCGGGTGCGCGGTGAACTTGAATAAGGGATGTCCGAGTGAGCTGCAGTTCGAAGGCGGGGCGGGGTGTAGAAGCGCGTGCGAGGCTTTTCAGACGCCGGAGTACTGCTGCAGTGGCGCGTATGGCTCACCGTCGACATGTAAGCCGTCGGTTTACTCGCAGATGTTTAAGGCGGCGTGTCCGACGGCGTATAGCTATGCGTACGATGATGGCACGAGTACGTTCACGTGTAGTGGAGCTGATTACATCATAACATTCTGCCCCTCATCCACAACAAGTCTTAAATCTTCAACACCAACAACTTCAACACTTCCAACATCACCAACAACGACGGTAACACCGCCGATGCCGACACAAAAAGCACCATCAGTATCACCACCAACAATGACACCACCAAGGCCAACGACGACGGTAACACCGCCACTGCCAACAGGGACAACGGCGACACCAACAGCACCGGCAACACCAACGAGGGCAACAGATGGGACCGGAGGTGGATATGTCATGGATTATTTTGGTTCATCGCCGAGTTTTAGTGGTGACGCTTCCAAGACACTTGCTTCTATTGCCATGGCTGCTTCTTCTGTTTTGTTTTATTTTCTATTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

358

Amino Acids

37.02

Weight (kDa)

4.59

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 32 - 243 6.7e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180
fragaria_vesca FvH4_2g38310
malus_domestica MD08G1011400.v1.1
prunus_persica Prupe.1G364000_v2.0.a1
pyrus_communis pycom08g01000
rosa_chinensis RchiOBHm_Chr6g0303061
rosa_laevigata RLG00000011112
rosa_multiflora Rmu_ssc0000460.1_g000033
rosa_roxburghii Rroxscaffold_7G00165070
rosa_rugosa Rorug06G0319100
rosa_samantha Rh6AG432600 Rh6BG470000 Rh6CG445000 Rh6DG431800
rosa_wichuraiana Rw6G037500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 396
Acc36I ACCTGC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 441
AccI GTMKAC 1 cut(s) 599
AccII CGCG 3 cut(s) 476, 542, 584
AcvI CACGTG 1 cut(s) 693
AcyI GRCGYC 3 cut(s) 321, 393, 560
AfaI GTAC 3 cut(s) 569, 668, 685
AfiI CCNNNNNNNGG 2 cut(s) 263, 443
AflIII ACRYGT 2 cut(s) 602, 692
AgeI ACCGGT 1 cut(s) 239
AgsI TTSAA 7 cut(s) 59, 200, 415, 465, 487, 756, 771
AjnI CCWGG 2 cut(s) 267, 399
AluBI AGCT 5 cut(s) 172, 213, 508, 660, 704
AluI AGCT 5 cut(s) 172, 213, 508, 660, 704
Alw26I GTCTC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 228
Ama87I CYCGRG 2 cut(s) 308, 367
AoxI GGCC 2 cut(s) 265, 863
ApeKI GCWGC 3 cut(s) 508, 573, 1040
AsiGI ACCGGT 1 cut(s) 239
AspLEI GCGC 4 cut(s) 323, 476, 542, 584
AspS9I GGNCC 2 cut(s) 216, 951
AsuC2I CCSGG 3 cut(s) 120, 180, 469
AsuHPI GGTGA 7 cut(s) 383, 464, 490, 585, 777, 831, 1016
AsuII TTCGAA 1 cut(s) 516
AvaI CYCGRG 2 cut(s) 308, 367
AvaII GGWCC 2 cut(s) 216, 951
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 275
BauI CACGAG 1 cut(s) 679
BbrPI CACGTG 1 cut(s) 693
BbvI GCAGC 3 cut(s) 495, 560, 1027
BccI CCATC 4 cut(s) 401, 668, 838, 941
BceAI ACGGC 4 cut(s) 334, 595, 666, 921
BcgI CGANNNNNNTGC 4 cut(s) 225, 259, 490, 524
BciT130I CCWGG 2 cut(s) 269, 401
BcnI CCSGG 3 cut(s) 120, 180, 469
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 3 cut(s) 128, 147, 152
BfmI CTRYAG 2 cut(s) 509, 574
BfoI RGCGCY 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 213
BisI GCNGC 7 cut(s) 295, 442, 445, 509, 574, 639, 1041
BlsI GCNGC 7 cut(s) 296, 443, 446, 510, 575, 640, 1042
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 5 cut(s) 120, 180, 269, 401, 469
Bme18I GGWCC 2 cut(s) 216, 951
BmeT110I CYCGRG 2 cut(s) 308, 367
BmgT120I GGNCC 2 cut(s) 216, 951
BmiI GGNNCC 5 cut(s) 274, 298, 322, 448, 952
BmrFI CCNGG 5 cut(s) 120, 180, 269, 401, 469
BmsI GCATC 2 cut(s) 364, 801
BplI GAGNNNNNCTC 2 cut(s) 176, 208
Bpu14I TTCGAA 1 cut(s) 516
BpuMI CCSGG 3 cut(s) 120, 180, 469
BsaAI YACGTR 1 cut(s) 693
BsaHI GRCGYC 3 cut(s) 321, 393, 560
BsaJI CCNNGG 3 cut(s) 268, 860, 1035
BsaWI WCCGGW 4 cut(s) 161, 239, 449, 953
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 443
Bse118I RCCGGY 4 cut(s) 131, 239, 323, 922
BseBI CCWGG 2 cut(s) 269, 401
BseDI CCNNGG 3 cut(s) 268, 860, 1035
BseGI GGATG 3 cut(s) 137, 500, 731
BseLI CCNNNNNNNGG 2 cut(s) 263, 443
BseXI GCAGC 3 cut(s) 495, 560, 1027
BsgI GTGCAG 2 cut(s) 262, 348
Bsh1236I CGCG 3 cut(s) 476, 542, 584
BshFI GGCC 2 cut(s) 267, 865
BshNI GGYRCC 1 cut(s) 320
BshTI ACCGGT 1 cut(s) 239
BsiHKCI CYCGRG 2 cut(s) 308, 367
BsiWI CGTACG 1 cut(s) 666
BslFI GGGAC 3 cut(s) 317, 913, 964
BslI CCNNNNNNNGG 2 cut(s) 263, 443
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 3 cut(s) 317, 913, 964
BsnI GGCC 2 cut(s) 267, 865
BsoBI CYCGRG 2 cut(s) 308, 367
Bsp119I TTCGAA 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 1035
BspANI GGCC 2 cut(s) 267, 865
BspFNI CGCG 3 cut(s) 476, 542, 584
BspLI GGNNCC 5 cut(s) 274, 298, 322, 448, 952
BspMAI CTGCAG 2 cut(s) 513, 578
BspMI ACCTGC 1 cut(s) 213
BspT104I TTCGAA 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 320
BsrBI CCGCTC 1 cut(s) 441
BsrFI RCCGGY 4 cut(s) 131, 239, 323, 922
BssAI RCCGGY 4 cut(s) 131, 239, 323, 922
BssECI CCNNGG 3 cut(s) 268, 860, 1035
BssMI GATC 1 cut(s) 6
BssNI GRCGYC 3 cut(s) 321, 393, 560
BssSI CACGAG 1 cut(s) 679
BssT1I CCWWGG 2 cut(s) 860, 1035
Bst2BI CACGAG 1 cut(s) 679
Bst2UI CCWGG 2 cut(s) 269, 401
Bst4CI ACNGT 5 cut(s) 112, 458, 597, 799, 877
BstACI GRCGYC 3 cut(s) 321, 393, 560
BstBAI YACGTR 1 cut(s) 693
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 544
BstDSI CCRYGG 1 cut(s) 1035
BstF5I GGATG 3 cut(s) 137, 500, 731
BstFNI CGCG 3 cut(s) 476, 542, 584
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 4 cut(s) 323, 476, 542, 584
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 8 cut(s) 189, 219, 347, 548, 579, 588, 1031, 1040
BstNI CCWGG 2 cut(s) 269, 401
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 5 cut(s) 118, 178, 267, 399, 467
BstSFI CTRYAG 2 cut(s) 509, 574
BstUI CGCG 3 cut(s) 476, 542, 584
BstV1I GCAGC 3 cut(s) 495, 560, 1027
BstXI CCANNNNNNTGG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 267, 865
BtgI CCRYGG 1 cut(s) 1035
BtgZI GCGATG 1 cut(s) 972
BtsCI GGATG 3 cut(s) 137, 500, 731
BtsI GCAGTG 2 cut(s) 583, 887
BtsIMutI CAGTG 3 cut(s) 108, 583, 887
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 544
CaiI CAGNNNCTG 1 cut(s) 228
CfoI GCGC 4 cut(s) 323, 476, 542, 584
Cfr10I RCCGGY 4 cut(s) 131, 239, 323, 922
Cfr13I GGNCC 2 cut(s) 216, 951
CseI GACGC 2 cut(s) 568, 1016
Csp6I GTAC 3 cut(s) 568, 667, 684
CspAI ACCGGT 1 cut(s) 239
CviAII CATG 3 cut(s) 603, 970, 1036
CviQI GTAC 3 cut(s) 568, 667, 684
DinI GGCGCC 1 cut(s) 322
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 860, 1035
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 2 cut(s) 216, 951
Eco72I CACGTG 1 cut(s) 693
Eco88I CYCGRG 2 cut(s) 308, 367
EcoRII CCWGG 2 cut(s) 267, 399
EcoT14I CCWWGG 2 cut(s) 860, 1035
EcoT38I GRGCYC 1 cut(s) 275
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 2 cut(s) 860, 1035
FaeI CATG 3 cut(s) 606, 973, 1039
FaiI YATR 9 cut(s) 425, 588, 604, 657, 663, 716, 966, 971, 1037
FaqI GGGAC 3 cut(s) 317, 913, 964
FatI CATG 3 cut(s) 602, 969, 1035
FauI CCCGC 3 cut(s) 346, 515, 520
FblI GTMKAC 1 cut(s) 599
Fnu4HI GCNGC 7 cut(s) 295, 442, 445, 509, 574, 639, 1041
FokI GGATG 3 cut(s) 124, 507, 718
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 7 cut(s) 295, 442, 445, 509, 574, 639, 1041
FspBI CTAG 3 cut(s) 128, 147, 152
GlaI GCGC 4 cut(s) 322, 475, 541, 583
GluI GCNGC 7 cut(s) 295, 442, 445, 509, 574, 639, 1041
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 2 cut(s) 267, 865
HgaI GACGC 2 cut(s) 568, 1016
HhaI GCGC 4 cut(s) 323, 476, 542, 584
Hin1I GRCGYC 3 cut(s) 321, 393, 560
Hin1II CATG 3 cut(s) 606, 973, 1039
Hin6I GCGC 4 cut(s) 321, 474, 540, 582
HinP1I GCGC 4 cut(s) 321, 474, 540, 582
HincII GTYRAC 1 cut(s) 600
HindII GTYRAC 1 cut(s) 600
HinfI GANTC 2 cut(s) 165, 185
HphI GGTGA 7 cut(s) 383, 464, 490, 585, 777, 831, 1016
Hpy166II GTNNAC 5 cut(s) 357, 481, 600, 619, 690
Hpy188I TCNGA 3 cut(s) 501, 558, 648
Hpy8I GTNNAC 5 cut(s) 357, 481, 600, 619, 690
Hpy99I CGWCG 7 cut(s) 395, 601, 616, 652, 799, 874, 877
HpyAV CCTTC 2 cut(s) 206, 512
HpyCH4III ACNGT 5 cut(s) 112, 458, 597, 799, 877
HpyCH4IV ACGT 3 cut(s) 393, 686, 692
HpyCH4V TGCA 7 cut(s) 246, 279, 315, 329, 377, 511, 576
HpyF10VI GCNNNNNNNGC 8 cut(s) 189, 219, 347, 548, 579, 588, 1031, 1040
HpySE526I ACGT 3 cut(s) 393, 686, 692
Hsp92I GRCGYC 3 cut(s) 321, 393, 560
Hsp92II CATG 3 cut(s) 606, 973, 1039
HspAI GCGC 4 cut(s) 321, 474, 540, 582
KasI GGCGCC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 6 cut(s) 177, 197, 278, 302, 452, 701
Lsp1109I GCAGC 3 cut(s) 495, 560, 1027
LweI GCATC 2 cut(s) 364, 801
MaeI CTAG 3 cut(s) 128, 147, 152
MaeII ACGT 3 cut(s) 393, 686, 692
MaeIII GTNAC 5 cut(s) 259, 452, 799, 877, 1004
MalI GATC 1 cut(s) 8
MbiI CCGCTC 1 cut(s) 441
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 453, 744, 1038
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 1 cut(s) 70
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 4 cut(s) 199, 324, 671, 803
MnlI CCTC 6 cut(s) 30, 345, 541, 739, 930, 950
MseI TTAA 3 cut(s) 69, 633, 747
MspR9I CCNGG 5 cut(s) 120, 180, 269, 401, 469
MvaI CCWGG 2 cut(s) 269, 401
MvnI CGCG 3 cut(s) 476, 542, 584
MwoI GCNNNNNNNGC 8 cut(s) 189, 219, 347, 548, 579, 588, 1031, 1040
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 3 cut(s) 120, 180, 469
NcoI CCATGG 1 cut(s) 1035
NdeII GATC 1 cut(s) 6
NlaIII CATG 3 cut(s) 606, 973, 1039
NlaIV GGNNCC 5 cut(s) 274, 298, 322, 448, 952
NmeAIII GCCGAG 2 cut(s) 376, 1017
NmuCI GTSAC 3 cut(s) 259, 452, 1004
NspI RCATGY 1 cut(s) 606
NspV TTCGAA 1 cut(s) 516
PaeR7I CTCGAG 1 cut(s) 308
PciI ACATGT 1 cut(s) 602
PfeI GAWTC 1 cut(s) 165
Pfl23II CGTACG 1 cut(s) 666
PflFI GACNNNGTC 1 cut(s) 257
PfoI TCCNGGA 1 cut(s) 118
PinAI ACCGGT 1 cut(s) 239
PkrI GCNGC 7 cut(s) 296, 443, 446, 510, 575, 640, 1042
PleI GAGTC 1 cut(s) 193
PluTI GGCGCC 1 cut(s) 324
PmaCI CACGTG 1 cut(s) 693
PmlI CACGTG 1 cut(s) 693
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 693
PscI ACATGT 1 cut(s) 602
Psp6I CCWGG 2 cut(s) 267, 399
PspCI CACGTG 1 cut(s) 693
PspGI CCWGG 2 cut(s) 267, 399
PspLI CGTACG 1 cut(s) 666
PspN4I GGNNCC 5 cut(s) 274, 298, 322, 448, 952
PspPI GGNCC 2 cut(s) 216, 951
PspXI VCTCGAGB 1 cut(s) 308
PstI CTGCAG 2 cut(s) 513, 578
PstNI CAGNNNCTG 1 cut(s) 228
PsyI GACNNNGTC 1 cut(s) 257
RsaI GTAC 3 cut(s) 569, 668, 685
RsaNI GTAC 3 cut(s) 568, 667, 684
SalI GTCGAC 1 cut(s) 598
SaqAI TTAA 3 cut(s) 69, 633, 747
SatI GCNGC 7 cut(s) 295, 442, 445, 509, 574, 639, 1041
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 216, 951
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 5 cut(s) 120, 180, 269, 401, 469
SduI GDGCHC 1 cut(s) 275
SfaNI GCATC 2 cut(s) 364, 801
SfcI CTRYAG 2 cut(s) 509, 574
SfoI GGCGCC 1 cut(s) 322
Sfr274I CTCGAG 1 cut(s) 308
SfuI TTCGAA 1 cut(s) 516
SgrAI CRCCGGYG 1 cut(s) 323
SinI GGWCC 2 cut(s) 216, 951
SlaI CTCGAG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 70
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 3 cut(s) 128, 147, 152
StyD4I CCNGG 5 cut(s) 118, 178, 267, 399, 467
StyI CCWWGG 2 cut(s) 860, 1035
TaaI ACNGT 5 cut(s) 112, 458, 597, 799, 877
TaiI ACGT 3 cut(s) 396, 689, 695
TaqI TCGA 9 cut(s) 5, 74, 235, 252, 309, 405, 432, 516, 599
TasI AATT 1 cut(s) 70
TatI WGTACW 1 cut(s) 567
TauI GCSGC 4 cut(s) 297, 444, 447, 641
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 3 cut(s) 69, 633, 747
Tru9I TTAA 3 cut(s) 69, 633, 747
TscAI CASTG 3 cut(s) 115, 583, 894
TseFI GTSAC 3 cut(s) 259, 452, 1004
TseI GCWGC 3 cut(s) 508, 573, 1040
Tsp45I GTSAC 3 cut(s) 259, 452, 1004
TspDTI ATGAA 2 cut(s) 126, 975
TspRI CASTG 3 cut(s) 115, 583, 894
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 2 cut(s) 216, 951
XceI RCATGY 1 cut(s) 606
XhoI CTCGAG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 599
XspI CTAG 3 cut(s) 128, 147, 152
ZraI GACGTC 1 cut(s) 394
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.