Rroxscaffold_7G00165070

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010716
Physical Location & Seq
Reverse (-)
6965432 .. 6966430
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165070.1

Sequence Viewer

Length: 999 bp
ATGTCGATCTTTCGTTGCCCTCTACAAATCATTCTCATTGTTTCGCTCATTAGTTTTCAAACCAGCGTTAATTCGACAACTTTTACATTCACAAACAGGTGCGATTACACTGTTTATCCTGGAACTCTAGCCGGTTCATCCAGCCCTAGACTAGAAAGCACCGGATTCCAGCTCCAACCCAGCGAGTCTCGCTCCCTTCAAGCCCCTCCAAGCTGGTCAGGCAGGTTCTGGGGTCGAACCGGTTGCAACTTCGACCCCATCACCGGCCAGGGCTCCTGCACCACCGCCGACTGTGGCTCCAACCAACTCGAGTGCAACGGCGCCGGTGCAGTCCCTCCCGCTACTCTCGCCGAGTTCACAATCGGCTCGGGTGATGCAAAGGACTTCTACGACGTCAGCCTGGTCGATGGCTTCAACTTGCCTATGCTGGTCCAACCGAGCGGCAGCTCCGGTGACTGTTCTTCAACCGGGTGCACGGTGAACTTGAATAAGGGATGTCCGAGTGAGTTGCAGTTCGAAGGAGGGGCGGGGTGTAGAAGCGCGTGCGAGGCTTTTCAGACGCCGGAGTACTGCTGCAGCGGTGAGTATGGCTCACCGTCGACATGTAAGCCGTCGGTTTACTCGCAGATGTTTAAGGCGGCGTGTCCGACGGCGTATAGCTATGCGTACGATGATGGCACGAGTACGTTCACGTGTAGTGGAGCTGATTACACCATAACATTCTGCCCTTCATCTACAACGAGTCTTAAATCTTCAACACCAACAACTTCAACACTTCCAACATCACCAACAACGACACCGCCCGCGCCACCGCCAACAGGGAGAACGGCTACACCAACAGCACCGGCAACACCCACGAGGGTAACAGATGGGACCGGAGGTGGATATGTCATGGATTATTTTGGTTCATCGCCGAGTTTTAGTGGTGACGCATCCAAGACACTTGCTTCTATTGCCATGGCTGCTTCTTCTGTTTTGTTTTATTTTCTATTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

332

Amino Acids

34.5

Weight (kDa)

4.5

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 32 - 243 1.3e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180
fragaria_vesca FvH4_2g38310
malus_domestica MD08G1011400.v1.1
prunus_persica Prupe.1G364000_v2.0.a1
pyrus_communis pycom08g01000
rosa_chinensis RchiOBHm_Chr6g0303061
rosa_laevigata RLG00000011112
rosa_multiflora Rmu_ssc0000460.1_g000033
rosa_roxburghii Rroxscaffold_7G00165070
rosa_rugosa Rorug06G0319100
rosa_samantha Rh6AG432600 Rh6BG470000 Rh6CG445000 Rh6DG431800
rosa_wichuraiana Rw6G037500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 396
Acc36I ACCTGC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 441
AccI GTMKAC 1 cut(s) 599
AccII CGCG 2 cut(s) 542, 806
AciI CCGC 9 cut(s) 285, 339, 441, 527, 579, 638, 800, 804, 812
AcoI YGGCCR 1 cut(s) 265
AcvI CACGTG 1 cut(s) 693
AcyI GRCGYC 3 cut(s) 321, 393, 560
AfaI GTAC 3 cut(s) 569, 668, 685
AfiI CCNNNNNNNGG 2 cut(s) 263, 818
AflIII ACRYGT 2 cut(s) 602, 692
AgeI ACCGGT 1 cut(s) 239
AgsI TTSAA 7 cut(s) 59, 200, 415, 465, 487, 756, 771
AjnI CCWGG 3 cut(s) 118, 267, 399
AluBI AGCT 5 cut(s) 172, 213, 447, 660, 704
AluI AGCT 5 cut(s) 172, 213, 447, 660, 704
Alw21I GWGCWC 1 cut(s) 476
Alw26I GTCTC 1 cut(s) 192
Alw44I GTGCAC 1 cut(s) 472
AlwNI CAGNNNCTG 1 cut(s) 228
Ama87I CYCGRG 2 cut(s) 308, 367
AoxI GGCC 1 cut(s) 265
ApaLI GTGCAC 1 cut(s) 472
ApeKI GCWGC 4 cut(s) 444, 573, 576, 962
AsiGI ACCGGT 1 cut(s) 239
AspLEI GCGC 3 cut(s) 323, 542, 808
AspS9I GGNCC 2 cut(s) 430, 873
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 8 cut(s) 253, 383, 464, 490, 585, 593, 777, 938
AsuII TTCGAA 1 cut(s) 516
AvaI CYCGRG 2 cut(s) 308, 367
AvaII GGWCC 2 cut(s) 430, 873
BaeGI GKGCMC 1 cut(s) 476
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 275
BauI CACGAG 2 cut(s) 679, 856
BbrPI CACGTG 1 cut(s) 693
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 4 cut(s) 456, 560, 588, 949
BccI CCATC 4 cut(s) 266, 401, 668, 863
BceAI ACGGC 4 cut(s) 334, 595, 666, 843
BcgI CGANNNNNNTGC 4 cut(s) 225, 259, 490, 524
BciT130I CCWGG 3 cut(s) 120, 269, 401
BcnI CCSGG 1 cut(s) 469
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 3 cut(s) 128, 147, 152
BfmI CTRYAG 1 cut(s) 574
BfoI RGCGCY 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 213
BisI GCNGC 6 cut(s) 442, 445, 574, 577, 639, 963
BlsI GCNGC 6 cut(s) 443, 446, 575, 578, 640, 964
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 4 cut(s) 120, 269, 401, 469
Bme18I GGWCC 2 cut(s) 430, 873
BmeT110I CYCGRG 2 cut(s) 308, 367
BmgT120I GGNCC 2 cut(s) 430, 873
BmiI GGNNCC 4 cut(s) 274, 298, 322, 874
BmrFI CCNGG 4 cut(s) 120, 269, 401, 469
BmsI GCATC 2 cut(s) 364, 941
BplI GAGNNNNNCTC 4 cut(s) 176, 208, 575, 607
Bpu14I TTCGAA 1 cut(s) 516
BpuMI CCSGG 1 cut(s) 469
BsaAI YACGTR 1 cut(s) 693
BsaHI GRCGYC 3 cut(s) 321, 393, 560
BsaJI CCNNGG 2 cut(s) 268, 957
BsaWI WCCGGW 4 cut(s) 161, 239, 449, 875
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 818
Bse118I RCCGGY 5 cut(s) 131, 239, 263, 323, 844
BseBI CCWGG 3 cut(s) 120, 269, 401
BseDI CCNNGG 2 cut(s) 268, 957
BseGI GGATG 3 cut(s) 137, 500, 932
BseLI CCNNNNNNNGG 2 cut(s) 263, 818
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 4 cut(s) 456, 560, 588, 949
BseYI CCCAGC 1 cut(s) 179
BsgI GTGCAG 2 cut(s) 262, 348
Bsh1236I CGCG 2 cut(s) 542, 806
BshFI GGCC 1 cut(s) 267
BshNI GGYRCC 1 cut(s) 320
BshTI ACCGGT 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 476
BsiHKCI CYCGRG 2 cut(s) 308, 367
BsiWI CGTACG 1 cut(s) 666
BslFI GGGAC 2 cut(s) 317, 886
BslI CCNNNNNNNGG 2 cut(s) 263, 818
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 2 cut(s) 317, 886
BsnI GGCC 1 cut(s) 267
BsoBI CYCGRG 2 cut(s) 308, 367
Bsp119I TTCGAA 1 cut(s) 516
Bsp1286I GDGCHC 2 cut(s) 275, 476
Bsp143I GATC 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 957
BspACI CCGC 9 cut(s) 285, 339, 441, 527, 579, 638, 800, 804, 812
BspANI GGCC 1 cut(s) 267
BspFNI CGCG 2 cut(s) 542, 806
BspLI GGNNCC 4 cut(s) 274, 298, 322, 874
BspMAI CTGCAG 1 cut(s) 578
BspMI ACCTGC 1 cut(s) 213
BspT104I TTCGAA 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 320
BsrBI CCGCTC 1 cut(s) 441
BsrFI RCCGGY 5 cut(s) 131, 239, 263, 323, 844
BssAI RCCGGY 5 cut(s) 131, 239, 263, 323, 844
BssECI CCNNGG 2 cut(s) 268, 957
BssMI GATC 1 cut(s) 6
BssNI GRCGYC 3 cut(s) 321, 393, 560
BssSI CACGAG 2 cut(s) 679, 856
BssT1I CCWWGG 1 cut(s) 957
Bst2BI CACGAG 2 cut(s) 679, 856
Bst2UI CCWGG 3 cut(s) 120, 269, 401
Bst4CI ACNGT 5 cut(s) 112, 293, 458, 478, 597
BstACI GRCGYC 3 cut(s) 321, 393, 560
BstBAI YACGTR 1 cut(s) 693
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 2 cut(s) 544, 804
BstDSI CCRYGG 1 cut(s) 957
BstF5I GGATG 3 cut(s) 137, 500, 932
BstFNI CGCG 2 cut(s) 542, 806
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 3 cut(s) 323, 542, 808
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 6 cut(s) 189, 219, 347, 548, 953, 962
BstNI CCWGG 3 cut(s) 120, 269, 401
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 4 cut(s) 118, 267, 399, 467
BstSFI CTRYAG 1 cut(s) 574
BstSLI GKGCMC 1 cut(s) 476
BstUI CGCG 2 cut(s) 542, 806
BstV1I GCAGC 4 cut(s) 456, 560, 588, 949
BsuRI GGCC 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 957
BtgZI GCGATG 1 cut(s) 894
BtsCI GGATG 3 cut(s) 137, 500, 932
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 2 cut(s) 544, 804
CaiI CAGNNNCTG 1 cut(s) 228
CfoI GCGC 3 cut(s) 323, 542, 808
Cfr10I RCCGGY 5 cut(s) 131, 239, 263, 323, 844
Cfr13I GGNCC 2 cut(s) 430, 873
CseI GACGC 2 cut(s) 568, 938
Csp6I GTAC 3 cut(s) 568, 667, 684
CspAI ACCGGT 1 cut(s) 239
CviAII CATG 3 cut(s) 603, 892, 958
CviQI GTAC 3 cut(s) 568, 667, 684
DinI GGCGCC 1 cut(s) 322
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
EaeI YGGCCR 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 957
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 2 cut(s) 430, 873
Eco72I CACGTG 1 cut(s) 693
Eco88I CYCGRG 2 cut(s) 308, 367
EcoRII CCWGG 3 cut(s) 118, 267, 399
EcoT14I CCWWGG 1 cut(s) 957
EcoT38I GRGCYC 1 cut(s) 275
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 957
FaeI CATG 3 cut(s) 606, 895, 961
FaiI YATR 9 cut(s) 425, 588, 604, 657, 663, 716, 888, 893, 959
FaqI GGGAC 2 cut(s) 317, 886
FatI CATG 3 cut(s) 602, 891, 957
FauI CCCGC 3 cut(s) 346, 520, 811
FblI GTMKAC 1 cut(s) 599
Fnu4HI GCNGC 6 cut(s) 442, 445, 574, 577, 639, 963
FokI GGATG 3 cut(s) 124, 507, 919
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 6 cut(s) 442, 445, 574, 577, 639, 963
FspBI CTAG 3 cut(s) 128, 147, 152
GlaI GCGC 3 cut(s) 322, 541, 807
GluI GCNGC 6 cut(s) 442, 445, 574, 577, 639, 963
GsaI CCCAGC 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 1 cut(s) 267
HgaI GACGC 2 cut(s) 568, 938
HhaI GCGC 3 cut(s) 323, 542, 808
Hin1I GRCGYC 3 cut(s) 321, 393, 560
Hin1II CATG 3 cut(s) 606, 895, 961
Hin6I GCGC 3 cut(s) 321, 540, 806
HinP1I GCGC 3 cut(s) 321, 540, 806
HincII GTYRAC 1 cut(s) 600
HindII GTYRAC 1 cut(s) 600
HinfI GANTC 3 cut(s) 165, 185, 742
HphI GGTGA 8 cut(s) 253, 383, 464, 490, 585, 593, 777, 938
Hpy166II GTNNAC 6 cut(s) 357, 474, 481, 600, 619, 690
Hpy188I TCNGA 3 cut(s) 501, 558, 648
Hpy8I GTNNAC 6 cut(s) 357, 474, 481, 600, 619, 690
Hpy99I CGWCG 4 cut(s) 395, 601, 616, 652
HpyAV CCTTC 3 cut(s) 206, 512, 738
HpyCH4III ACNGT 5 cut(s) 112, 293, 458, 478, 597
HpyCH4IV ACGT 3 cut(s) 393, 686, 692
HpyCH4V TGCA 8 cut(s) 246, 279, 315, 329, 377, 474, 511, 576
HpyF10VI GCNNNNNNNGC 6 cut(s) 189, 219, 347, 548, 953, 962
HpySE526I ACGT 3 cut(s) 393, 686, 692
Hsp92I GRCGYC 3 cut(s) 321, 393, 560
Hsp92II CATG 3 cut(s) 606, 895, 961
HspAI GCGC 3 cut(s) 321, 540, 806
KasI GGCGCC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 6 cut(s) 177, 197, 278, 302, 452, 701
Lsp1109I GCAGC 4 cut(s) 456, 560, 588, 949
LweI GCATC 2 cut(s) 364, 941
MaeI CTAG 3 cut(s) 128, 147, 152
MaeII ACGT 3 cut(s) 393, 686, 692
MaeIII GTNAC 3 cut(s) 452, 862, 926
MalI GATC 1 cut(s) 8
MbiI CCGCTC 1 cut(s) 441
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 453, 744, 960
MhlI GDGCHC 2 cut(s) 275, 476
MluCI AATT 1 cut(s) 70
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 2 cut(s) 194, 751
MmeI TCCRAC 5 cut(s) 199, 324, 457, 671, 803
MnlI CCTC 7 cut(s) 30, 216, 345, 515, 541, 852, 872
MseI TTAA 3 cut(s) 69, 633, 747
MspA1I CMGCKG 1 cut(s) 579
MspR9I CCNGG 4 cut(s) 120, 269, 401, 469
MvaI CCWGG 3 cut(s) 120, 269, 401
MvnI CGCG 2 cut(s) 542, 806
MwoI GCNNNNNNNGC 6 cut(s) 189, 219, 347, 548, 953, 962
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 1 cut(s) 469
NcoI CCATGG 1 cut(s) 957
NdeII GATC 1 cut(s) 6
NlaIII CATG 3 cut(s) 606, 895, 961
NlaIV GGNNCC 4 cut(s) 274, 298, 322, 874
NmeAIII GCCGAG 2 cut(s) 376, 939
NmuCI GTSAC 2 cut(s) 452, 926
NspI RCATGY 1 cut(s) 606
NspV TTCGAA 1 cut(s) 516
PaeR7I CTCGAG 1 cut(s) 308
PciI ACATGT 1 cut(s) 602
PfeI GAWTC 1 cut(s) 165
Pfl23II CGTACG 1 cut(s) 666
PfoI TCCNGGA 1 cut(s) 118
PinAI ACCGGT 1 cut(s) 239
PkrI GCNGC 6 cut(s) 443, 446, 575, 578, 640, 964
PleI GAGTC 2 cut(s) 193, 750
PluTI GGCGCC 1 cut(s) 324
PmaCI CACGTG 1 cut(s) 693
PmlI CACGTG 1 cut(s) 693
PpsI GAGTC 2 cut(s) 193, 750
Ppu21I YACGTR 1 cut(s) 693
PscI ACATGT 1 cut(s) 602
Psp6I CCWGG 3 cut(s) 118, 267, 399
PspCI CACGTG 1 cut(s) 693
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 3 cut(s) 118, 267, 399
PspLI CGTACG 1 cut(s) 666
PspN4I GGNNCC 4 cut(s) 274, 298, 322, 874
PspPI GGNCC 2 cut(s) 430, 873
PspXI VCTCGAGB 1 cut(s) 308
PstI CTGCAG 1 cut(s) 578
PstNI CAGNNNCTG 1 cut(s) 228
RsaI GTAC 3 cut(s) 569, 668, 685
RsaNI GTAC 3 cut(s) 568, 667, 684
SalI GTCGAC 1 cut(s) 598
SaqAI TTAA 3 cut(s) 69, 633, 747
SatI GCNGC 6 cut(s) 442, 445, 574, 577, 639, 963
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 430, 873
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 2 cut(s) 194, 751
ScrFI CCNGG 4 cut(s) 120, 269, 401, 469
SduI GDGCHC 2 cut(s) 275, 476
SfaNI GCATC 2 cut(s) 364, 941
SfcI CTRYAG 1 cut(s) 574
SfoI GGCGCC 1 cut(s) 322
Sfr274I CTCGAG 1 cut(s) 308
SfuI TTCGAA 1 cut(s) 516
SgrAI CRCCGGYG 1 cut(s) 323
SinI GGWCC 2 cut(s) 430, 873
SlaI CTCGAG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 70
SsiI CCGC 9 cut(s) 285, 339, 441, 527, 579, 638, 800, 804, 812
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 3 cut(s) 128, 147, 152
StyD4I CCNGG 4 cut(s) 118, 267, 399, 467
StyI CCWWGG 1 cut(s) 957
TaaI ACNGT 5 cut(s) 112, 293, 458, 478, 597
TaiI ACGT 3 cut(s) 396, 689, 695
TaqI TCGA 8 cut(s) 5, 74, 235, 252, 309, 405, 516, 599
TasI AATT 1 cut(s) 70
TatI WGTACW 1 cut(s) 567
TauI GCSGC 2 cut(s) 444, 641
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 3 cut(s) 69, 633, 747
Tru9I TTAA 3 cut(s) 69, 633, 747
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 2 cut(s) 452, 926
TseI GCWGC 4 cut(s) 444, 573, 576, 962
Tsp45I GTSAC 2 cut(s) 452, 926
TspDTI ATGAA 3 cut(s) 126, 720, 897
TspRI CASTG 1 cut(s) 115
VneI GTGCAC 1 cut(s) 472
VpaK11BI GGWCC 2 cut(s) 430, 873
XceI RCATGY 1 cut(s) 606
XhoI CTCGAG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 599
XspI CTAG 3 cut(s) 128, 147, 152
ZraI GACGTC 1 cut(s) 394
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.