MD08G1011400.v1.1

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0010716
Physical Location & Seq
Reverse (-)
872213 .. 873854
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1011400.v1.1.491

Sequence Viewer

Length: 990 bp
ATGGATCTGATGGCCTTTTTCCATTATTCTCCTCTTCACATCACTCTAATTTTGTTTGCAATTTGCTGCAAAGGAATATCAGGAGCTACATTTACAATGATGAACAAGTGCGACTACACAGTATGGCCGGGAATTCTATCCAATGCGGGGACTACCAGTTTAGACAGCACCGGCCTTGAGCTCCAACCGGGCGGCTCACGTTCCTTTCAATCTCCACCTAACTGGTCCGGCCGGTTCTGGGGTCGAACAGGCTGCAACTTTGACCCCACAACCGGGGCTGGCACCTGTGCCACCGCCGACTGTGGCTCCAACCAGATCGAATGCAATGGTGCAGGTGCAACCCCGCCCGCTACTCTGGCTGAGTTCACAATTGGCGGCTCTGACAACCAGGACTTCTATGATGTCAGCTTAGTTGACGGATACAATTTGCCCATGATGGTGGAACCTAGCGGCGGTTCCGGTAATTGTTTGTCGACCGGGTGCGCCACCGACTTGAACCAACAGTGCCCCGCTGAGTTGCAATTCGGGAACGGCGCGGCGTGTAAGAGTGCGTGCGAGGCGTTTGGGAGCCCGGAATACTGCTGCAACGGCGCGTTTGCTACGCCGGACACGTGCAAGCCGTCGGTGTACTCGGAGATGTTTAAGTCGGCATGTCCGAGATCGTATAGCTACGCGTACGACGATGCCACGAGTACGTTTACATGTAGTGGAGCTGATTACACCATAACCTTCTGCCCTTCTACTACAAGTCAAAAATCTGCAACAGATACATCAACAAGCACGACAAGCACAACAAATACCGGGTCAGGTTCCCGAGGTGGGAGTGGGACGACGGCCGGGGAGCTGCCGACGGTGGCAGGAAAAAGTAATCCGTCATGGTTACCAAACTTTTACACCGGAGACTCGTCCAAGACCATCTCTTCTGCTGCTCTTCACTATACGTTGGTTGCTTCGGCTGCCATTGTCTACCTTATCTCCTTGCCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

330

Amino Acids

34.19

Weight (kDa)

4.46

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 35 - 246 3e-85 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180 AT4G24180
fragaria_vesca FvH4_2g38310
malus_domestica MD08G1011400.v1.1
prunus_persica Prupe.1G364000_v2.0.a1
pyrus_communis pycom08g01000
rosa_chinensis RchiOBHm_Chr6g0303061
rosa_laevigata RLG00000011112
rosa_multiflora Rmu_ssc0000460.1_g000033
rosa_roxburghii Rroxscaffold_7G00165070
rosa_rugosa Rorug06G0319100
rosa_samantha Rh6AG432600 Rh6BG470000 Rh6CG445000 Rh6DG431800
rosa_wichuraiana Rw6G037500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 323
Acc36I ACCTGC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 281
AccI GTMKAC 2 cut(s) 473, 966
AccII CGCG 3 cut(s) 536, 593, 674
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 3 cut(s) 125, 229, 834
AcsI RAATTY 1 cut(s) 132
AcvI CACGTG 1 cut(s) 612
AfaI GTAC 3 cut(s) 629, 677, 694
AfiI CCNNNNNNNGG 6 cut(s) 147, 238, 272, 273, 452, 819
AflIII ACRYGT 3 cut(s) 609, 672, 701
AgsI TTSAA 2 cut(s) 209, 496
AjnI CCWGG 1 cut(s) 387
AluBI AGCT 6 cut(s) 86, 181, 408, 669, 713, 844
AluI AGCT 6 cut(s) 86, 181, 408, 669, 713, 844
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 894
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 813
AoxI GGCC 5 cut(s) 12, 125, 172, 229, 834
ApeKI GCWGC 6 cut(s) 66, 252, 582, 844, 926, 956
ApoI RAATTY 1 cut(s) 132
ArsI GACNNNNNNTTYG 2 cut(s) 788, 820
AspLEI GCGC 3 cut(s) 485, 536, 593
AspS9I GGNCC 1 cut(s) 225
AsuC2I CCSGG 7 cut(s) 129, 189, 274, 478, 572, 802, 838
AvaI CYCGRG 1 cut(s) 813
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 509
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 2 cut(s) 183, 572
BauI CACGAG 1 cut(s) 688
BbrPI CACGTG 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 6 cut(s) 53, 239, 569, 831, 913, 943
BccI CCATC 3 cut(s) 4, 430, 923
BceAI ACGGC 4 cut(s) 547, 604, 604, 849
BcgI CGANNNNNNTGC 2 cut(s) 234, 268
BciT130I CCWGG 1 cut(s) 389
BciVI GTATCC 1 cut(s) 413
BcnI CCSGG 7 cut(s) 129, 189, 274, 478, 572, 802, 838
BcoDI GTCTC 1 cut(s) 894
BfaI CTAG 1 cut(s) 447
BfuAI ACCTGC 1 cut(s) 323
BfuI GTATCC 1 cut(s) 413
Bme1390I CCNGG 8 cut(s) 129, 189, 274, 389, 478, 572, 802, 838
Bme18I GGWCC 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 813
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 6 cut(s) 283, 307, 444, 457, 569, 811
BmrFI CCNGG 8 cut(s) 129, 189, 274, 389, 478, 572, 802, 838
BmsI GCATC 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 7 cut(s) 129, 189, 274, 478, 572, 802, 838
BsaAI YACGTR 1 cut(s) 612
BsaJI CCNNGG 3 cut(s) 273, 814, 837
BsaWI WCCGGW 2 cut(s) 458, 896
BsaXI ACNNNNNCTCC 4 cut(s) 290, 320, 959, 989
Bsc4I CCNNNNNNNGG 6 cut(s) 147, 238, 272, 273, 452, 819
Bse118I RCCGGY 2 cut(s) 170, 231
Bse1I ACTGG 2 cut(s) 156, 227
Bse3DI GCAATG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 3 cut(s) 273, 814, 837
BseLI CCNNNNNNNGG 6 cut(s) 147, 238, 272, 273, 452, 819
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 2 cut(s) 351, 504
BseNI ACTGG 2 cut(s) 156, 227
BseRI GAGGAG 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 509
BseX3I CGGCCG 2 cut(s) 229, 834
BseXI GCAGC 6 cut(s) 53, 239, 569, 831, 913, 943
BsgI GTGCAG 1 cut(s) 351
Bsh1236I CGCG 3 cut(s) 536, 593, 674
Bsh1285I CGRYCG 3 cut(s) 232, 477, 837
BshFI GGCC 5 cut(s) 14, 127, 174, 231, 836
BshNI GGYRCC 1 cut(s) 281
BsiEI CGRYCG 3 cut(s) 232, 477, 837
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 813
BsiWI CGTACG 1 cut(s) 675
BslFI GGGAC 2 cut(s) 163, 841
BslI CCNNNNNNNGG 6 cut(s) 147, 238, 272, 273, 452, 819
BsmAI GTCTC 1 cut(s) 894
BsmFI GGGAC 2 cut(s) 163, 841
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 5 cut(s) 14, 127, 174, 231, 836
BsoBI CYCGRG 1 cut(s) 813
Bsp1286I GDGCHC 3 cut(s) 183, 509, 572
Bsp143I GATC 3 cut(s) 4, 315, 659
BspANI GGCC 5 cut(s) 14, 127, 174, 231, 836
BspCNI CTCAG 2 cut(s) 352, 505
BspFNI CGCG 3 cut(s) 536, 593, 674
BspLI GGNNCC 6 cut(s) 283, 307, 444, 457, 569, 811
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 936
BspT107I GGYRCC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 331
BsrFI RCCGGY 2 cut(s) 170, 231
BsrI ACTGG 2 cut(s) 156, 227
BssAI RCCGGY 2 cut(s) 170, 231
BssECI CCNNGG 3 cut(s) 273, 814, 837
BssMI GATC 3 cut(s) 4, 315, 659
BssSI CACGAG 1 cut(s) 688
Bst2BI CACGAG 1 cut(s) 688
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 4 cut(s) 121, 302, 504, 853
Bst6I CTCTTC 3 cut(s) 39, 925, 936
BstBAI YACGTR 1 cut(s) 612
BstC8I GCNNGC 4 cut(s) 280, 348, 553, 617
BstDEI CTNAG 3 cut(s) 360, 409, 513
BstEII GGTNACC 1 cut(s) 879
BstFNI CGCG 3 cut(s) 536, 593, 674
BstHHI GCGC 3 cut(s) 485, 536, 593
BstKTI GATC 3 cut(s) 7, 318, 662
BstMAI GTCTC 1 cut(s) 894
BstMBI GATC 3 cut(s) 4, 315, 659
BstMCI CGRYCG 3 cut(s) 232, 477, 837
BstMWI GCNNNNNNNGC 5 cut(s) 356, 557, 588, 786, 956
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 2 cut(s) 654, 705
BstPI GGTNACC 1 cut(s) 879
BstSCI CCNGG 8 cut(s) 127, 187, 272, 387, 476, 570, 800, 836
BstSLI GKGCMC 1 cut(s) 509
BstUI CGCG 3 cut(s) 536, 593, 674
BstV1I GCAGC 6 cut(s) 53, 239, 569, 831, 913, 943
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 2 cut(s) 222, 439
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 2 cut(s) 229, 834
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 5 cut(s) 14, 127, 174, 231, 836
BtsIMutI CAGTG 1 cut(s) 509
BveI ACCTGC 1 cut(s) 323
Cac8I GCNNGC 4 cut(s) 280, 348, 553, 617
CfoI GCGC 3 cut(s) 485, 536, 593
Cfr10I RCCGGY 2 cut(s) 170, 231
Cfr13I GGNCC 1 cut(s) 225
Csp6I GTAC 3 cut(s) 628, 676, 693
CviAII CATG 4 cut(s) 433, 651, 702, 876
CviQI GTAC 3 cut(s) 628, 676, 693
DdeI CTNAG 3 cut(s) 360, 409, 513
DpnI GATC 3 cut(s) 6, 317, 661
DpnII GATC 3 cut(s) 4, 315, 659
EaeI YGGCCR 3 cut(s) 125, 229, 834
EagI CGGCCG 2 cut(s) 229, 834
Eam1104I CTCTTC 3 cut(s) 39, 925, 936
EarI CTCTTC 3 cut(s) 39, 925, 936
Ecl136II GAGCTC 1 cut(s) 181
EclXI CGGCCG 2 cut(s) 229, 834
Eco24I GRGCYC 2 cut(s) 183, 572
Eco47I GGWCC 1 cut(s) 225
Eco52I CGGCCG 2 cut(s) 229, 834
Eco53kI GAGCTC 1 cut(s) 181
Eco72I CACGTG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 813
Eco91I GGTNACC 1 cut(s) 879
EcoICRI GAGCTC 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 879
EcoRI GAATTC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 387
EcoT38I GRGCYC 2 cut(s) 183, 572
FaeI CATG 4 cut(s) 436, 654, 705, 879
FaiI YATR 9 cut(s) 124, 399, 434, 652, 666, 703, 725, 877, 939
FaqI GGGAC 2 cut(s) 163, 841
FatI CATG 4 cut(s) 432, 650, 701, 875
FauI CCCGC 4 cut(s) 139, 351, 355, 517
FblI GTMKAC 2 cut(s) 473, 966
FriOI GRGCYC 2 cut(s) 183, 572
FspBI CTAG 1 cut(s) 447
GlaI GCGC 3 cut(s) 484, 535, 592
HaeIII GGCC 5 cut(s) 14, 127, 174, 231, 836
HhaI GCGC 3 cut(s) 485, 536, 593
Hin1II CATG 4 cut(s) 436, 654, 705, 879
Hin6I GCGC 3 cut(s) 483, 534, 591
HinP1I GCGC 3 cut(s) 483, 534, 591
HincII GTYRAC 2 cut(s) 415, 474
HindII GTYRAC 2 cut(s) 415, 474
HinfI GANTC 1 cut(s) 902
Hpy166II GTNNAC 6 cut(s) 366, 415, 474, 628, 699, 967
Hpy188I TCNGA 4 cut(s) 9, 382, 634, 657
Hpy188III TCNNGA 3 cut(s) 81, 526, 813
Hpy8I GTNNAC 6 cut(s) 366, 415, 474, 628, 699, 967
Hpy99I CGWCG 4 cut(s) 625, 683, 835, 853
HpyAV CCTTC 2 cut(s) 739, 747
HpyCH4III ACNGT 4 cut(s) 121, 302, 504, 853
HpyCH4IV ACGT 4 cut(s) 199, 611, 695, 941
HpyF10VI GCNNNNNNNGC 5 cut(s) 356, 557, 588, 786, 956
HpyF3I CTNAG 3 cut(s) 360, 409, 513
HpySE526I ACGT 4 cut(s) 199, 611, 695, 941
Hsp92II CATG 4 cut(s) 436, 654, 705, 879
HspAI GCGC 3 cut(s) 483, 534, 591
Kzo9I GATC 3 cut(s) 4, 315, 659
LguI GCTCTTC 1 cut(s) 936
LmnI GCTCC 6 cut(s) 83, 186, 311, 567, 710, 841
Lsp1109I GCAGC 6 cut(s) 53, 239, 569, 831, 913, 943
LweI GCATC 1 cut(s) 673
MaeI CTAG 1 cut(s) 447
MaeII ACGT 4 cut(s) 199, 611, 695, 941
MaeIII GTNAC 1 cut(s) 879
MalI GATC 3 cut(s) 6, 317, 661
MboI GATC 3 cut(s) 4, 315, 659
MboII GAAGA 3 cut(s) 26, 912, 923
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 183, 509, 572
MluCI AATT 7 cut(s) 48, 60, 132, 369, 424, 463, 521
MluI ACGCGT 1 cut(s) 672
MlyI GAGTC 1 cut(s) 896
MmeI TCCRAC 2 cut(s) 208, 333
MnlI CCTC 3 cut(s) 42, 550, 809
MseI TTAA 1 cut(s) 642
MslI CAYNNNNRTG 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 512
MspR9I CCNGG 8 cut(s) 129, 189, 274, 389, 478, 572, 802, 838
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 389
MvnI CGCG 3 cut(s) 536, 593, 674
MwoI GCNNNNNNNGC 5 cut(s) 356, 557, 588, 786, 956
NciI CCSGG 7 cut(s) 129, 189, 274, 478, 572, 802, 838
NdeII GATC 3 cut(s) 4, 315, 659
NlaIII CATG 4 cut(s) 436, 654, 705, 879
NlaIV GGNNCC 6 cut(s) 283, 307, 444, 457, 569, 811
NspI RCATGY 2 cut(s) 654, 705
PaqCI CACCTGC 1 cut(s) 323
PciI ACATGT 1 cut(s) 701
PciSI GCTCTTC 1 cut(s) 936
PcsI WCGNNNNNNNCGW 4 cut(s) 608, 617, 653, 678
PctI GAATGC 1 cut(s) 326
Pfl23II CGTACG 1 cut(s) 675
PleI GAGTC 1 cut(s) 896
PmaCI CACGTG 1 cut(s) 612
PmlI CACGTG 1 cut(s) 612
PpsI GAGTC 1 cut(s) 896
Ppu21I YACGTR 1 cut(s) 612
PscI ACATGT 1 cut(s) 701
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 387
PspCI CACGTG 1 cut(s) 612
PspEI GGTNACC 1 cut(s) 879
PspGI CCWGG 1 cut(s) 387
PspLI CGTACG 1 cut(s) 675
PspN4I GGNNCC 6 cut(s) 283, 307, 444, 457, 569, 811
PspPI GGNCC 1 cut(s) 225
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 3 cut(s) 629, 677, 694
RsaNI GTAC 3 cut(s) 628, 676, 693
RseI CAYNNNNRTG 1 cut(s) 437
SacI GAGCTC 1 cut(s) 183
SalI GTCGAC 1 cut(s) 472
SapI GCTCTTC 1 cut(s) 936
SaqAI TTAA 1 cut(s) 642
Sau3AI GATC 3 cut(s) 4, 315, 659
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 1 cut(s) 896
ScrFI CCNGG 8 cut(s) 129, 189, 274, 389, 478, 572, 802, 838
SduI GDGCHC 3 cut(s) 183, 509, 572
SfaNI GCATC 1 cut(s) 673
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 7 cut(s) 48, 60, 132, 369, 424, 463, 521
SspMI CTAG 1 cut(s) 447
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 8 cut(s) 127, 187, 272, 387, 476, 570, 800, 836
TaaI ACNGT 4 cut(s) 121, 302, 504, 853
TaiI ACGT 4 cut(s) 202, 614, 698, 944
TaqI TCGA 3 cut(s) 244, 318, 473
TasI AATT 7 cut(s) 48, 60, 132, 369, 424, 463, 521
TatI WGTACW 1 cut(s) 627
TauI GCSGC 4 cut(s) 195, 378, 453, 539
Tru1I TTAA 1 cut(s) 642
Tru9I TTAA 1 cut(s) 642
TscAI CASTG 1 cut(s) 509
TseI GCWGC 6 cut(s) 66, 252, 582, 844, 926, 956
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 2 cut(s) 432, 861
TspRI CASTG 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 1 cut(s) 132
XceI RCATGY 2 cut(s) 654, 705
XmiI GTMKAC 2 cut(s) 473, 966
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.