Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009114

Physical Location & Seq

Genomic Coordinates Forward (+)

12645542 .. 12647985

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G24470.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTTTGGTCGCCATTCGATTATCCCAAATAACCAGATTGGTACCGCCTCTGCTTCCGCTGGTGAAGACCATGTCTCTGCCTCCGCTACGTCTGGTCACATTCCTTACGACGATATGGAAGAAATCCCTCATCCTGACTCTATCTATGGTGCTGCCTCCGATTTGATTCCCGATGGCTCTCAATTGGTTGCTCACCGATCCGATGGCTCTGAATTACTTGTTTCTCGGCCACCGGAAGGGGCGAATCAGCTTACGATCTCGTTCCGTGGACAAGTTTACGTTTTTGATGCCGTTGGTGCTGACAAGGTGGATGCTGTGTTGTCGCTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCAGGTGATGGAACTAGCTCAACAGCAGAATCATATGCCTGTTGTAGAATATCAGAGCCGCTGTAGCCTTCCGCAACGGGCACAATCCTTGGATAGGTTTCGGAAGAAGAGGAATGCTAGATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTTGCCTTAAGAATGGCACGTAATAAAGGTCAATTCACCTCTTCAAAGATGACAGATGGGGCTTATAACTCTGGCACAGATCAAGATTCTGCCCAAGATGATGCCCATCCAGAAATATCGTGTACTCATTGCGGCATTAGTTCCAAATGTACACCAATGATGCGACGTGGCCCTTCCGGCCCCAGGACTCTCTGCAATGCCTGTGGACTTTTTTGGGCTAACAGGGGTACATTGAGGGATCTCTCAAAGAAAACAGAAGAGAATCAGTTGGCTTTAATGAAACCGGATGATGGTGGGAGTGTTGCTGATGCTGCTAACAACTTAAACACTGAAGCTGCAAGTGTTGAAGAACACACTTCCATGGTTTCTCTTGCCAATGGGGATAATTCTAATCTGTTAGGTGATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

309

Amino Acids

33.26

Weight (kDa)

5.68

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	79 - 111	3.4e-12	tify domain
CCT	PF06203	146 - 188	3.5e-14	CCT motif
GATA	PF00320	214 - 250	1.4e-11	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24470 AT4G24470 AT4G24470
fragaria_vesca	FvH4_5g34500 FvH4_5g34500
malus_domestica	MD08G1200800.v1.1 MD15G1387700.v1.1
prunus_persica	Prupe.1G534300_v2.0.a1
pyrus_communis	pycom08g17440 pycom15g34800
rosa_chinensis	RchiOBHm_Chr7g0235141
rosa_laevigata	RLG00000001179
rosa_multiflora	Rmu_sc0002239.1_g000022 Rmu_sc0007762.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226250
rosa_rugosa	Rorug07G0288200.1 Rorug07G0288300
rosa_samantha	Rh7AG442900 Rh7BG415600 Rh7CG463800 Rh7DG432600
rosa_wichuraiana	Rw7G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
AarI	CACCTGC	1 cut(s)	352
Acc36I	ACCTGC	1 cut(s)	352
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	7 cut(s)	45, 57, 84, 359, 418, 431, 651
AclWI	GGATC	2 cut(s)	192, 765
AcoI	YGGCCR	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	870
AfaI	GTAC	4 cut(s)	43, 643, 670, 748
AfiI	CCNNNNNNNGG	4 cut(s)	236, 453, 702, 809
AflII	CTTAAG	1 cut(s)	526
AgsI	TTSAA	2 cut(s)	564, 866
AjiI	CACGTC	1 cut(s)	686
AjnI	CCWGG	2 cut(s)	352, 701
AluBI	AGCT	4 cut(s)	250, 346, 377, 854
AluI	AGCT	4 cut(s)	250, 346, 377, 854
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	2 cut(s)	192, 765
AoxI	GGCC	3 cut(s)	227, 688, 697
ApeKI	GCWGC	3 cut(s)	152, 830, 854
Asp718I	GGTACC	1 cut(s)	41
AspS9I	GGNCC	3 cut(s)	356, 689, 698
AsuHPI	GGTGA	4 cut(s)	74, 185, 376, 547
AvaII	GGWCC	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	3 cut(s)	139, 817, 841
BccI	CCATC	6 cut(s)	167, 197, 361, 569, 633, 803
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	354, 703
BclI	TGATCA	1 cut(s)	922
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	2 cut(s)	374, 477
BfmI	CTRYAG	1 cut(s)	421
BfrI	CTTAAG	1 cut(s)	526
BfuAI	ACCTGC	1 cut(s)	352
BglI	GCCNNNNNGGC	1 cut(s)	696
BisI	GCNGC	5 cut(s)	153, 418, 652, 831, 855
BlsI	GCNGC	5 cut(s)	154, 419, 653, 832, 856
Bme1390I	CCNGG	2 cut(s)	354, 703
Bme18I	GGWCC	1 cut(s)	356
BmgBI	CACGTC	1 cut(s)	686
BmgT120I	GGNCC	3 cut(s)	356, 689, 698
BmiI	GGNNCC	2 cut(s)	43, 700
BmrFI	CCNGG	2 cut(s)	354, 703
BmsI	GCATC	5 cut(s)	277, 301, 610, 669, 817
BpiI	GAAGAC	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	624
BsaJI	CCNNGG	4 cut(s)	265, 447, 701, 879
BsaWI	WCCGGW	2 cut(s)	232, 802
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 453, 702, 809
Bse3DI	GCAATG	2 cut(s)	646, 721
Bse8I	GATNNNNATC	1 cut(s)	624
BseBI	CCWGG	2 cut(s)	354, 703
BseDI	CCNNGG	4 cut(s)	265, 447, 701, 879
BseGI	GGATG	4 cut(s)	130, 316, 625, 811
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	4 cut(s)	236, 453, 702, 809
BseMI	GCAATG	2 cut(s)	646, 721
BseMII	CTCAG	1 cut(s)	333
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	3 cut(s)	139, 817, 841
BshFI	GGCC	3 cut(s)	229, 690, 699
BshNI	GGYRCC	1 cut(s)	41
BsiSI	CCGG	3 cut(s)	233, 696, 803
BslI	CCNNNNNNNGG	4 cut(s)	236, 453, 702, 809
BsmAI	GTCTC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	3 cut(s)	229, 690, 699
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp1407I	TGTACA	1 cut(s)	668
Bsp143I	GATC	5 cut(s)	197, 255, 598, 757, 922
Bsp19I	CCATGG	1 cut(s)	879
BspACI	CCGC	7 cut(s)	45, 57, 84, 359, 418, 431, 651
BspANI	GGCC	3 cut(s)	229, 690, 699
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	43, 700
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	2 cut(s)	192, 765
BspT107I	GGYRCC	1 cut(s)	41
BspTI	CTTAAG	1 cut(s)	526
BsrDI	GCAATG	2 cut(s)	646, 721
BsrGI	TGTACA	1 cut(s)	668
BssECI	CCNNGG	4 cut(s)	265, 447, 701, 879
BssMI	GATC	5 cut(s)	197, 255, 598, 757, 922
BssT1I	CCWWGG	2 cut(s)	447, 879
Bst2UI	CCWGG	2 cut(s)	354, 703
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	3 cut(s)	461, 565, 771
BstAFI	CTTAAG	1 cut(s)	526
BstAUI	TGTACA	1 cut(s)	668
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	2 cut(s)	265, 879
BstENI	CCTNNNNNAGG	1 cut(s)	451
BstF5I	GGATG	4 cut(s)	130, 316, 625, 811
BstKTI	GATC	5 cut(s)	200, 258, 601, 760, 925
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	5 cut(s)	197, 255, 598, 757, 922
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 423, 696, 830
BstNI	CCWGG	2 cut(s)	354, 703
BstSCI	CCNGG	2 cut(s)	352, 701
BstSFI	CTRYAG	1 cut(s)	421
BstSLI	GKGCMC	1 cut(s)	442
BstV1I	GCAGC	3 cut(s)	139, 817, 841
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BsuRI	GGCC	3 cut(s)	229, 690, 699
BtgI	CCRYGG	2 cut(s)	265, 879
BtrI	CACGTC	1 cut(s)	686
BtsCI	GGATG	4 cut(s)	130, 316, 625, 811
BtsIMutI	CAGTG	1 cut(s)	846
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	348
Cfr13I	GGNCC	3 cut(s)	356, 689, 698
Csp6I	GTAC	4 cut(s)	42, 642, 669, 747
CspCI	CAANNNNNGTGG	2 cut(s)	703, 738
CviAII	CATG	2 cut(s)	71, 880
CviQI	GTAC	4 cut(s)	42, 642, 669, 747
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	5 cut(s)	199, 257, 600, 759, 924
DpnII	GATC	5 cut(s)	197, 255, 598, 757, 922
EaeI	YGGCCR	1 cut(s)	227
Eam1104I	CTCTTC	3 cut(s)	461, 565, 771
EarI	CTCTTC	3 cut(s)	461, 565, 771
Eco130I	CCWWGG	2 cut(s)	447, 879
Eco47I	GGWCC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	870
EcoNI	CCTNNNNNAGG	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	352, 701
EcoT14I	CCWWGG	2 cut(s)	447, 879
ErhI	CCWWGG	2 cut(s)	447, 879
FaeI	CATG	2 cut(s)	74, 883
FaiI	YATR	7 cut(s)	72, 116, 147, 393, 395, 585, 881
FatI	CATG	2 cut(s)	70, 879
FauNDI	CATATG	1 cut(s)	393
FbaI	TGATCA	1 cut(s)	922
Fnu4HI	GCNGC	5 cut(s)	153, 418, 652, 831, 855
FokI	GGATG	4 cut(s)	117, 323, 612, 818
Fsp4HI	GCNGC	5 cut(s)	153, 418, 652, 831, 855
FspBI	CTAG	2 cut(s)	374, 477
GluI	GCNGC	5 cut(s)	153, 418, 652, 831, 855
HaeIII	GGCC	3 cut(s)	229, 690, 699
HapII	CCGG	3 cut(s)	233, 696, 803
Hin1II	CATG	2 cut(s)	74, 883
HinfI	GANTC	7 cut(s)	137, 166, 244, 388, 605, 706, 781
HpaII	CCGG	3 cut(s)	233, 696, 803
HphI	GGTGA	4 cut(s)	74, 185, 376, 547
Hpy166II	GTNNAC	5 cut(s)	269, 277, 642, 671, 725
Hpy188I	TCNGA	5 cut(s)	160, 202, 211, 414, 462
Hpy188III	TCNNGA	5 cut(s)	134, 170, 487, 602, 629
Hpy8I	GTNNAC	5 cut(s)	269, 277, 642, 671, 725
Hpy99I	CGWCG	2 cut(s)	113, 687
HpyAV	CCTTC	3 cut(s)	230, 437, 702
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	4 cut(s)	89, 279, 538, 685
HpyCH4V	TGCA	2 cut(s)	714, 857
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 423, 696, 830
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	4 cut(s)	89, 279, 538, 685
Hsp92II	CATG	2 cut(s)	74, 883
KpnI	GGTACC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	922
Kzo9I	GATC	5 cut(s)	197, 255, 598, 757, 922
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	3 cut(s)	139, 817, 841
LweI	GCATC	5 cut(s)	277, 301, 610, 669, 817
MaeI	CTAG	2 cut(s)	374, 477
MaeII	ACGT	4 cut(s)	89, 279, 538, 685
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	5 cut(s)	199, 257, 600, 759, 924
MboI	GATC	5 cut(s)	197, 255, 598, 757, 922
MboII	GAAGA	8 cut(s)	77, 131, 475, 478, 502, 552, 788, 878
MfeI	CAATTG	1 cut(s)	182
MflI	RGATCY	1 cut(s)	757
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	4 cut(s)	182, 212, 551, 904
MlyI	GAGTC	2 cut(s)	131, 700
MnlI	CCTC	7 cut(s)	58, 91, 138, 166, 462, 568, 747
MseI	TTAA	3 cut(s)	527, 794, 842
MslI	CAYNNNNRTG	1 cut(s)	878
MspA1I	CMGCKG	2 cut(s)	59, 420
MspCI	CTTAAG	1 cut(s)	526
MspI	CCGG	3 cut(s)	233, 696, 803
MspR9I	CCNGG	2 cut(s)	354, 703
MunI	CAATTG	1 cut(s)	182
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	2 cut(s)	354, 703
MwoI	GCNNNNNNNGC	4 cut(s)	296, 423, 696, 830
NcoI	CCATGG	1 cut(s)	879
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	5 cut(s)	197, 255, 598, 757, 922
NlaIII	CATG	2 cut(s)	74, 883
NlaIV	GGNNCC	2 cut(s)	43, 700
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	95
PaqCI	CACCTGC	1 cut(s)	352
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	5 cut(s)	166, 244, 388, 605, 781
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	5 cut(s)	154, 419, 653, 832, 856
PleI	GAGTC	2 cut(s)	131, 700
PpsI	GAGTC	2 cut(s)	131, 700
Ppu21I	YACGTR	1 cut(s)	539
PsiI	TTATAA	1 cut(s)	585
Psp6I	CCWGG	2 cut(s)	352, 701
PspGI	CCWGG	2 cut(s)	352, 701
PspN4I	GGNNCC	2 cut(s)	43, 700
PspPI	GGNCC	3 cut(s)	356, 689, 698
PsuI	RGATCY	1 cut(s)	757
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	4 cut(s)	43, 643, 670, 748
RsaNI	GTAC	4 cut(s)	42, 642, 669, 747
RseI	CAYNNNNRTG	1 cut(s)	878
SaqAI	TTAA	3 cut(s)	527, 794, 842
SatI	GCNGC	5 cut(s)	153, 418, 652, 831, 855
Sau3AI	GATC	5 cut(s)	197, 255, 598, 757, 922
Sau96I	GGNCC	3 cut(s)	356, 689, 698
SchI	GAGTC	2 cut(s)	131, 700
ScrFI	CCNGG	2 cut(s)	354, 703
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	5 cut(s)	277, 301, 610, 669, 817
SfcI	CTRYAG	1 cut(s)	421
SfiI	GGCCNNNNNGGCC	1 cut(s)	696
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	878
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	4 cut(s)	182, 212, 551, 904
SsiI	CCGC	7 cut(s)	45, 57, 84, 359, 418, 431, 651
SspMI	CTAG	2 cut(s)	374, 477
StyD4I	CCNGG	2 cut(s)	352, 701
StyI	CCWWGG	2 cut(s)	447, 879
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	4 cut(s)	92, 282, 541, 688
TaqI	TCGA	2 cut(s)	17, 486
TasI	AATT	4 cut(s)	182, 212, 551, 904
TatI	WGTACW	2 cut(s)	641, 668
TauI	GCSGC	2 cut(s)	420, 654
TfiI	GAWTC	5 cut(s)	166, 244, 388, 605, 781
Tru1I	TTAA	3 cut(s)	527, 794, 842
Tru9I	TTAA	3 cut(s)	527, 794, 842
TscAI	CASTG	1 cut(s)	853
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	3 cut(s)	152, 830, 854
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	812
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	853
Tth111I	GACNNNGTC	1 cut(s)	71
Vha464I	CTTAAG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	356
XagI	CCTNNNNNAGG	1 cut(s)	451
XspI	CTAG	2 cut(s)	374, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.