RLG00000001179

GATA transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
11453212 .. 11457357
4146 bp
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UTR
Exon/CDS
Intron
RLM00000001179

Sequence Viewer

Length: 894 bp
ATGTACGGACACGCCCACCCCATGGACATGCAAAACCAGATCCCCGCCGGCGGCGGCAACGACGACGATGCGCCGGGCCCGGAGTCCATCGACAACGCCCACATTCACTACGAAGGCCACACGCTCGAGGACGGCGGGGTCGTCGTCGAGGAGGCCACCTCCGATGACGTTTACATTCACGGCGGAAATACCGACCTGGACATGGCTATTCCTTACGAGGGCTCCAGTCAGCTCACGCTCTCGTTTCGTGGCCAAGTCTACGTCTTTGACTCCGTTACGCCTGATAAGGTTCAAGCTGTGCTATTACTGTTGGGGGGCTCGGAATCATCTTCTGGTGCCCAAGGTGTAGACATGACAACTCAGAATCAGAGGGCCATAACAGAGTTTCCAACAGGCTGTAATCAGCCTCATAGAGCAGCATCGTTAAATAGGTTTCGTCAAAAGAGGAAAGAACGATGCTTTGATAAGAAAGTCAGATATAGTGTCCGTCAAGAAGTTGCCCTCAGGATGCAGCGTAACAAGGGGCAATTTACTTCTTCCAAAAAGTCAGACGGAGATTACAGCTGGGGTTCTGGCCAAGAGTCAAGGCAAGATGACAGCAATGCAGAAACCTCATGCACACATTGTGGAACAAGTTCAAAGAGCACACCAATGATGCGGCGTGGTCCATCTGGTCCAAGGTCTCTTTGCAATGCTTGTGGGCTATTCTGGGCAAATAGGGGGGTTTTGAGGGATATTTCCAAGAGACCACTGGGTCTTTCTCAGGCTGCTGGAGAACAGGGTGAGGCTGAAGCTGATGACTCAGACACTGGAACGGCCATCGTTGTACACAATGCTGCAGATGCTGTTCCCTTATCTAATGGTGATAACAAGGCTTTAGTTGCTGAAACTTAG

Protein Analysis

298

Amino Acids

31.96

Weight (kDa)

5.27

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 74 - 105 2e-13 tify domain
CCT PF06203 138 - 180 7.8e-16 CCT motif
Jas_motif PF09425 138 - 160 2.4e-06 Jas motif
GATA PF00320 206 - 242 4e-14 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 137, 753
AccB1I GGYRCC 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 22
AccI GTMKAC 2 cut(s) 258, 348
AciI CCGC 6 cut(s) 45, 51, 54, 135, 183, 658
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 3 cut(s) 250, 574, 816
AcuI CTGAAG 1 cut(s) 810
AdeI CACNNNGTG 1 cut(s) 626
AfaI GTAC 2 cut(s) 5, 828
AfiI CCNNNNNNNGG 4 cut(s) 22, 50, 202, 218
AgsI TTSAA 2 cut(s) 293, 639
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 4 cut(s) 232, 296, 564, 794
AluI AGCT 4 cut(s) 232, 296, 564, 794
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 2 cut(s) 687, 739
AlwI GGATC 1 cut(s) 34
AlwNI CAGNNNCTG 2 cut(s) 809, 845
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 7 cut(s) 76, 115, 153, 250, 372, 574, 816
ApaI GGGCCC 1 cut(s) 80
ApeKI GCWGC 4 cut(s) 416, 511, 767, 836
Asp700I GAANNNNTTC 1 cut(s) 634
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 5 cut(s) 76, 77, 372, 665, 674
AsuC2I CCSGG 2 cut(s) 75, 80
AsuHPI GGTGA 2 cut(s) 794, 875
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 2 cut(s) 665, 674
AxyI CCTNAGG 1 cut(s) 503
BaeGI GKGCMC 2 cut(s) 80, 340
BalI TGGCCA 2 cut(s) 252, 576
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 3 cut(s) 80, 224, 320
Bbv12I GWGCWC 1 cut(s) 647
BbvI GCAGC 4 cut(s) 428, 523, 754, 823
BccI CCATC 3 cut(s) 95, 676, 827
BceAI ACGGC 3 cut(s) 148, 196, 831
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 1 cut(s) 197
BcnI CCSGG 2 cut(s) 75, 80
BcoDI GTCTC 2 cut(s) 687, 739
BfmI CTRYAG 1 cut(s) 837
BisI GCNGC 7 cut(s) 52, 55, 417, 512, 659, 768, 837
BlsI GCNGC 7 cut(s) 53, 56, 418, 513, 660, 769, 838
Bme1390I CCNGG 3 cut(s) 75, 80, 197
Bme18I GGWCC 2 cut(s) 665, 674
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 5 cut(s) 76, 77, 372, 665, 674
BmiI GGNNCC 3 cut(s) 78, 223, 337
BmrFI CCNGG 3 cut(s) 75, 80, 197
BmrI ACTGGG 1 cut(s) 761
BmsI GCATC 6 cut(s) 58, 428, 446, 498, 645, 832
BmuI ACTGGG 1 cut(s) 761
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BpmI CTGGAG 2 cut(s) 208, 792
BpuMI CCSGG 2 cut(s) 75, 80
BsaI GGTCTC 2 cut(s) 687, 739
BsaJI CCNNGG 3 cut(s) 21, 340, 677
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 50, 202, 218
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 3 cut(s) 225, 756, 814
Bse21I CCTNAGG 1 cut(s) 503
Bse3DI GCAATG 2 cut(s) 607, 697
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 3 cut(s) 21, 340, 677
BseGI GGATG 1 cut(s) 513
BseLI CCNNNNNNNGG 4 cut(s) 22, 50, 202, 218
BseMI GCAATG 2 cut(s) 607, 697
BseMII CTCAG 4 cut(s) 374, 517, 776, 816
BseNI ACTGG 3 cut(s) 225, 756, 814
BseRI GAGGAG 1 cut(s) 164
BseSI GKGCMC 2 cut(s) 80, 340
BseXI GCAGC 4 cut(s) 428, 523, 754, 823
BseYI CCCAGC 1 cut(s) 564
BshFI GGCC 7 cut(s) 78, 117, 155, 252, 374, 576, 818
BshNI GGYRCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 647
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 3 cut(s) 48, 74, 80
BslI CCNNNNNNNGG 4 cut(s) 22, 50, 202, 218
BsmAI GTCTC 2 cut(s) 687, 739
BsnI GGCC 7 cut(s) 78, 117, 155, 252, 374, 576, 818
Bso31I GGTCTC 2 cut(s) 687, 739
BsoBI CYCGRG 1 cut(s) 125
Bsp120I GGGCCC 1 cut(s) 76
Bsp1286I GDGCHC 5 cut(s) 80, 224, 320, 340, 647
Bsp1407I TGTACA 1 cut(s) 826
Bsp143I GATC 1 cut(s) 39
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 6 cut(s) 45, 51, 54, 135, 183, 658
BspANI GGCC 7 cut(s) 78, 117, 155, 252, 374, 576, 818
BspCNI CTCAG 4 cut(s) 373, 516, 775, 815
BspLI GGNNCC 3 cut(s) 78, 223, 337
BspMAI CTGCAG 1 cut(s) 841
BspPI GGATC 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 335
BspTNI GGTCTC 2 cut(s) 687, 739
BsrDI GCAATG 2 cut(s) 607, 697
BsrFI RCCGGY 1 cut(s) 47
BsrGI TGTACA 1 cut(s) 826
BsrI ACTGG 3 cut(s) 225, 756, 814
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 21, 340, 677
BssMI GATC 1 cut(s) 39
BssT1I CCWWGG 3 cut(s) 21, 340, 677
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 309
BstAUI TGTACA 1 cut(s) 826
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 5 cut(s) 360, 503, 762, 802, 891
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 513
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 2 cut(s) 687, 739
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 842, 881
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 3 cut(s) 73, 78, 195
BstSFI CTRYAG 1 cut(s) 837
BstSLI GKGCMC 2 cut(s) 80, 340
BstV1I GCAGC 4 cut(s) 428, 523, 754, 823
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 503
BsuRI GGCC 7 cut(s) 78, 117, 155, 252, 374, 576, 818
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 513
BtsIMutI CAGTG 2 cut(s) 749, 807
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 2 cut(s) 809, 845
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 5 cut(s) 76, 77, 372, 665, 674
Csp6I GTAC 2 cut(s) 4, 827
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviAII CATG 5 cut(s) 22, 28, 202, 352, 615
CviQI GTAC 2 cut(s) 4, 827
DdeI CTNAG 5 cut(s) 360, 503, 762, 802, 891
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
DraIII CACNNNGTG 1 cut(s) 626
DrdI GACNNNNNNGTC 2 cut(s) 137, 753
DseDI GACNNNNNNGTC 2 cut(s) 137, 753
EaeI YGGCCR 3 cut(s) 250, 574, 816
EciI GGCGGA 1 cut(s) 198
Eco130I CCWWGG 3 cut(s) 21, 340, 677
Eco24I GRGCYC 3 cut(s) 80, 224, 320
Eco31I GGTCTC 2 cut(s) 687, 739
Eco47I GGWCC 2 cut(s) 665, 674
Eco57I CTGAAG 1 cut(s) 810
Eco81I CCTNAGG 1 cut(s) 503
Eco88I CYCGRG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 3 cut(s) 21, 340, 677
EcoT38I GRGCYC 3 cut(s) 80, 224, 320
ErhI CCWWGG 3 cut(s) 21, 340, 677
FaeI CATG 5 cut(s) 25, 31, 205, 355, 618
FaiI YATR 8 cut(s) 23, 29, 203, 353, 377, 411, 480, 616
FatI CATG 5 cut(s) 21, 27, 201, 351, 614
FauI CCCGC 2 cut(s) 52, 128
FblI GTMKAC 2 cut(s) 258, 348
Fnu4HI GCNGC 7 cut(s) 52, 55, 417, 512, 659, 768, 837
FokI GGATG 1 cut(s) 520
FriOI GRGCYC 3 cut(s) 80, 224, 320
Fsp4HI GCNGC 7 cut(s) 52, 55, 417, 512, 659, 768, 837
GlaI GCGC 1 cut(s) 72
GluI GCNGC 7 cut(s) 52, 55, 417, 512, 659, 768, 837
GsaI CCCAGC 1 cut(s) 568
GsuI CTGGAG 2 cut(s) 208, 792
HaeIII GGCC 7 cut(s) 78, 117, 155, 252, 374, 576, 818
HapII CCGG 3 cut(s) 48, 74, 80
HhaI GCGC 1 cut(s) 73
Hin1II CATG 5 cut(s) 25, 31, 205, 355, 618
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 6 cut(s) 83, 269, 323, 364, 581, 800
HpaII CCGG 3 cut(s) 48, 74, 80
HphI GGTGA 2 cut(s) 794, 875
Hpy166II GTNNAC 4 cut(s) 172, 259, 349, 829
Hpy188I TCNGA 7 cut(s) 163, 322, 363, 369, 476, 550, 805
Hpy188III TCNNGA 2 cut(s) 491, 505
Hpy8I GTNNAC 4 cut(s) 172, 259, 349, 829
Hpy99I CGWCG 4 cut(s) 65, 68, 146, 149
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4IV ACGT 2 cut(s) 168, 261
HpyCH4V TGCA 6 cut(s) 31, 511, 605, 618, 690, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 842, 881
HpyF3I CTNAG 5 cut(s) 360, 503, 762, 802, 891
HpySE526I ACGT 2 cut(s) 168, 261
Hsp92II CATG 5 cut(s) 25, 31, 205, 355, 618
HspAI GCGC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 4 cut(s) 428, 523, 754, 823
LweI GCATC 6 cut(s) 58, 428, 446, 498, 645, 832
MaeII ACGT 2 cut(s) 168, 261
MaeIII GTNAC 2 cut(s) 274, 515
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 2 cut(s) 321, 528
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 5 cut(s) 80, 224, 320, 340, 647
MlsI TGGCCA 2 cut(s) 252, 576
MluCI AATT 1 cut(s) 527
MluNI TGGCCA 2 cut(s) 252, 576
MlyI GAGTC 4 cut(s) 92, 263, 590, 794
MmeI TCCRAC 1 cut(s) 413
Mox20I TGGCCA 2 cut(s) 252, 576
MreI CGCCGGCG 1 cut(s) 47
MroNI GCCGGC 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 634
MscI TGGCCA 2 cut(s) 252, 576
MseI TTAA 1 cut(s) 425
MslI CAYNNNNRTG 2 cut(s) 26, 650
Msp20I TGGCCA 2 cut(s) 252, 576
MspA1I CMGCKG 1 cut(s) 564
MspI CCGG 3 cut(s) 48, 74, 80
MspR9I CCNGG 3 cut(s) 75, 80, 197
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 842, 881
NaeI GCCGGC 1 cut(s) 49
NciI CCSGG 2 cut(s) 75, 80
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 39
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 5 cut(s) 25, 31, 205, 355, 618
NlaIV GGNNCC 3 cut(s) 78, 223, 337
NspI RCATGY 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 634
PfeI GAWTC 2 cut(s) 323, 364
PflMI CCANNNNNTGG 1 cut(s) 22
PkrI GCNGC 7 cut(s) 53, 56, 418, 513, 660, 769, 838
PleI GAGTC 4 cut(s) 91, 263, 589, 794
PpsI GAGTC 4 cut(s) 91, 263, 589, 794
Psp6I CCWGG 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 564
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 3 cut(s) 78, 223, 337
PspOMI GGGCCC 1 cut(s) 76
PspPI GGNCC 5 cut(s) 76, 77, 372, 665, 674
PspXI VCTCGAGB 1 cut(s) 125
PstI CTGCAG 1 cut(s) 841
PstNI CAGNNNCTG 2 cut(s) 809, 845
PsuI RGATCY 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 564
RsaI GTAC 2 cut(s) 5, 828
RsaNI GTAC 2 cut(s) 4, 827
RseI CAYNNNNRTG 2 cut(s) 26, 650
SaqAI TTAA 1 cut(s) 425
SatI GCNGC 7 cut(s) 52, 55, 417, 512, 659, 768, 837
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 5 cut(s) 76, 77, 372, 665, 674
SchI GAGTC 4 cut(s) 92, 263, 590, 794
ScrFI CCNGG 3 cut(s) 75, 80, 197
SduI GDGCHC 5 cut(s) 80, 224, 320, 340, 647
SfaNI GCATC 6 cut(s) 58, 428, 446, 498, 645, 832
SfcI CTRYAG 1 cut(s) 837
Sfr274I CTCGAG 1 cut(s) 125
SgrAI CRCCGGYG 1 cut(s) 47
SinI GGWCC 2 cut(s) 665, 674
SlaI CTCGAG 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 26, 650
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 1 cut(s) 527
SsiI CCGC 6 cut(s) 45, 51, 54, 135, 183, 658
StyD4I CCNGG 3 cut(s) 73, 78, 195
StyI CCWWGG 3 cut(s) 21, 340, 677
TaaI ACNGT 1 cut(s) 309
TaiI ACGT 2 cut(s) 171, 264
TaqI TCGA 3 cut(s) 90, 126, 147
TasI AATT 1 cut(s) 527
TatI WGTACW 1 cut(s) 826
TauI GCSGC 3 cut(s) 54, 57, 661
TfiI GAWTC 2 cut(s) 323, 364
Tru1I TTAA 1 cut(s) 425
Tru9I TTAA 1 cut(s) 425
TscAI CASTG 2 cut(s) 756, 814
TseI GCWGC 4 cut(s) 416, 511, 767, 836
TspGWI ACGGA 4 cut(s) 21, 262, 476, 567
TspRI CASTG 2 cut(s) 756, 814
Van91I CCANNNNNTGG 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 665, 674
XceI RCATGY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 748
XhoI CTCGAG 1 cut(s) 125
XmiI GTMKAC 2 cut(s) 258, 348
XmnI GAANNNNTTC 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.