Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009114

Physical Location & Seq

Genomic Coordinates Forward (+)

43675178 .. 43679423

Gene Structure 4246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G534300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTACGGACACTCCGAGCCCATGACCATGTCCAACCCGATTCCCGCCGGTGGCGACGACGATGCCGCCGGCCCCGGCGTCGACTCCATTGACAACGCCCACATTCACTACGAACCCCATACGCTCGAGGACGGCGGCGGCGTCGTCGCCGTCGTCGAGGATGTAAGCTCCGACCCCGTCTACGACGTCGGTAGCTCCGAAATGCGTGCTCAGCCGTACGACGGCTCCAGTCAGCTCACGCTCTCGTTTCGTGGCCAGGTCTTTGTTTTTGACGCTGTTACGCCTGAGAAGGTTCAAGCAGTGCTATTACTGTTGGGGGGCAGCGAATTATCTTCCGGCCCTCAAGGTGCGGAGTTGGCATCTCAGAATCAGAGGGGTACAGAAGATTTTCCCATACGATGTAGTCAGCCTCACAGAGCAGCATCATTAAGTAGGTTTCGTCAAAAGAGAAAAGAGCGATGCTTTGATAAAAAAGTCAGATATAGTGTCCGCCAAGAAGTTGCACTCAGGATGCAGCGTAACAAGGGGCAATTTTCTTCTTCAAAAAAGTCAGATGGGGATTATAGCTGGGGTAATGGCCAGGAGTCAGGGCAGGATGATAGCCATGCAGAAACCTCCTGCAAGCATTGTGGAATAAGCTCAAAGTCCACACCAATGATGCGGCGTGGGCCATCTGGTCCAAGGTCTCTTTGCAATGCTTGTGGGCTTTTTTGGGCAAACAGGGGGACTTTAAGGGAGCTTTCCAAGAGAACCCAAGATCATTCTGTGACTCCAGCTGAGCAGGGTGAAGCTGATACTAAAGATTTGAACAGCGTAACTGCCATCGATGCACACAACAGTCTTGTTCCCTTCTCTAATGGTGATAGCTCAGCTTTAGTTGCTGAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

297

Amino Acids

31.95

Weight (kDa)

5.61

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24470 AT4G24470 AT4G24470
fragaria_vesca	FvH4_5g34500 FvH4_5g34500
malus_domestica	MD08G1200800.v1.1 MD15G1387700.v1.1
prunus_persica	Prupe.1G534300_v2.0.a1
pyrus_communis	pycom08g17440 pycom15g34800
rosa_chinensis	RchiOBHm_Chr7g0235141
rosa_laevigata	RLG00000001179
rosa_multiflora	Rmu_sc0002239.1_g000022 Rmu_sc0007762.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226250
rosa_rugosa	Rorug07G0288200.1 Rorug07G0288300
rosa_samantha	Rh7AG442900 Rh7BG415600 Rh7CG463800 Rh7DG432600
rosa_wichuraiana	Rw7G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	189
AccI	GTMKAC	2 cut(s)	81, 180
AciI	CCGC	7 cut(s)	45, 66, 135, 138, 350, 490, 661
AcoI	YGGCCR	2 cut(s)	253, 577
AcyI	GRCGYC	3 cut(s)	78, 141, 186
AfaI	GTAC	3 cut(s)	5, 218, 379
AfiI	CCNNNNNNNGG	2 cut(s)	50, 221
AgsI	TTSAA	3 cut(s)	296, 543, 808
AjnI	CCWGG	2 cut(s)	255, 579
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	690
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	5 cut(s)	70, 253, 337, 577, 668
ApeKI	GCWGC	3 cut(s)	321, 419, 514
Asp700I	GAANNNNTTC	1 cut(s)	387
AspS9I	GGNCC	4 cut(s)	71, 338, 668, 677
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	797, 872
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	677
BalI	TGGCCA	2 cut(s)	255, 579
BanII	GRGCYC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	333, 431, 526
BccI	CCATC	3 cut(s)	548, 679, 830
BceAI	ACGGC	4 cut(s)	134, 148, 199, 238
BcgI	CGANNNNNNTGC	4 cut(s)	44, 78, 188, 222
BciT130I	CCWGG	2 cut(s)	257, 581
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	690
BisI	GCNGC	7 cut(s)	66, 136, 139, 322, 420, 515, 662
BlpI	GCTNAGC	3 cut(s)	210, 777, 868
BlsI	GCNGC	7 cut(s)	67, 137, 140, 323, 421, 516, 663
Bme1390I	CCNGG	3 cut(s)	75, 257, 581
Bme18I	GGWCC	1 cut(s)	677
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	4 cut(s)	71, 338, 668, 677
BmiI	GGNNCC	2 cut(s)	73, 226
BmrFI	CCNGG	3 cut(s)	75, 257, 581
BmsI	GCATC	7 cut(s)	52, 368, 431, 449, 501, 648, 817
BpmI	CTGGAG	2 cut(s)	211, 756
Bpu1102I	GCTNAGC	3 cut(s)	210, 777, 868
BpuEI	CTTGAG	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	825
BsaHI	GRCGYC	3 cut(s)	78, 141, 186
BsaI	GGTCTC	1 cut(s)	690
BsaJI	CCNNGG	2 cut(s)	73, 680
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 209, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 221
Bse118I	RCCGGY	2 cut(s)	47, 68
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	700
BseBI	CCWGG	2 cut(s)	257, 581
BseCI	ATCGAT	1 cut(s)	825
BseDI	CCNNGG	2 cut(s)	73, 680
BseGI	GGATG	3 cut(s)	166, 516, 601
BseLI	CCNNNNNNNGG	2 cut(s)	50, 221
BseMI	GCAATG	1 cut(s)	700
BseMII	CTCAG	6 cut(s)	224, 276, 377, 520, 768, 882
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	3 cut(s)	333, 431, 526
BseYI	CCCAGC	1 cut(s)	567
BshFI	GGCC	5 cut(s)	72, 255, 339, 579, 670
BshVI	ATCGAT	1 cut(s)	825
BsiHKAI	GWGCWC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	4 cut(s)	48, 69, 75, 336
BsiWI	CGTACG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	2 cut(s)	50, 221
BsmAI	GTCTC	1 cut(s)	690
BsmFI	GGGAC	1 cut(s)	739
BsnI	GGCC	5 cut(s)	72, 255, 339, 579, 670
Bso31I	GGTCTC	1 cut(s)	690
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	21, 211
Bsp143I	GATC	1 cut(s)	757
Bsp1720I	GCTNAGC	3 cut(s)	210, 777, 868
BspACI	CCGC	7 cut(s)	45, 66, 135, 138, 350, 490, 661
BspANI	GGCC	5 cut(s)	72, 255, 339, 579, 670
BspCNI	CTCAG	6 cut(s)	223, 277, 376, 519, 769, 881
BspDI	ATCGAT	1 cut(s)	825
BspLI	GGNNCC	2 cut(s)	73, 226
BspTNI	GGTCTC	1 cut(s)	690
BsrDI	GCAATG	1 cut(s)	700
BsrFI	RCCGGY	2 cut(s)	47, 68
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	2 cut(s)	47, 68
BssECI	CCNNGG	2 cut(s)	73, 680
BssMI	GATC	1 cut(s)	757
BssNI	GRCGYC	3 cut(s)	78, 141, 186
BssT1I	CCWWGG	1 cut(s)	680
Bst2UI	CCWGG	2 cut(s)	257, 581
Bst4CI	ACNGT	3 cut(s)	312, 839, 888
BstACI	GRCGYC	3 cut(s)	78, 141, 186
BstC8I	GCNNGC	3 cut(s)	70, 207, 623
BstDEI	CTNAG	6 cut(s)	210, 285, 363, 506, 777, 868
BstF5I	GGATG	3 cut(s)	166, 516, 601
BstKTI	GATC	1 cut(s)	760
BstMAI	GTCTC	1 cut(s)	690
BstMBI	GATC	1 cut(s)	757
BstMWI	GCNNNNNNNGC	5 cut(s)	211, 356, 667, 827, 878
BstNI	CCWGG	2 cut(s)	257, 581
BstSCI	CCNGG	3 cut(s)	73, 255, 579
BstV1I	GCAGC	3 cut(s)	333, 431, 526
Bsu15I	ATCGAT	1 cut(s)	825
BsuRI	GGCC	5 cut(s)	72, 255, 339, 579, 670
BsuTUI	ATCGAT	1 cut(s)	825
BtgZI	GCGATG	1 cut(s)	472
BtsCI	GGATG	3 cut(s)	166, 516, 601
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	3 cut(s)	70, 207, 623
Cfr10I	RCCGGY	2 cut(s)	47, 68
Cfr13I	GGNCC	4 cut(s)	71, 338, 668, 677
ClaI	ATCGAT	1 cut(s)	825
CseI	GACGC	3 cut(s)	67, 130, 281
Csp6I	GTAC	3 cut(s)	4, 217, 378
CspCI	CAANNNNNGTGG	4 cut(s)	610, 645, 682, 717
CviAII	CATG	3 cut(s)	22, 28, 605
CviQI	GTAC	3 cut(s)	4, 217, 378
DdeI	CTNAG	6 cut(s)	210, 285, 363, 506, 777, 868
DpnI	GATC	1 cut(s)	759
DpnII	GATC	1 cut(s)	757
EaeI	YGGCCR	2 cut(s)	253, 577
EciI	GGCGGA	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	680
Eco24I	GRGCYC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	690
Eco47I	GGWCC	1 cut(s)	677
Eco88I	CYCGRG	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	255, 579
EcoT14I	CCWWGG	1 cut(s)	680
EcoT38I	GRGCYC	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	680
FaeI	CATG	3 cut(s)	25, 31, 608
FaiI	YATR	7 cut(s)	23, 29, 120, 395, 483, 564, 606
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	3 cut(s)	21, 27, 604
FauI	CCCGC	1 cut(s)	52
FblI	GTMKAC	2 cut(s)	81, 180
Fnu4HI	GCNGC	7 cut(s)	66, 136, 139, 322, 420, 515, 662
FokI	GGATG	3 cut(s)	173, 523, 608
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	7 cut(s)	66, 136, 139, 322, 420, 515, 662
GluI	GCNGC	7 cut(s)	66, 136, 139, 322, 420, 515, 662
GsaI	CCCAGC	1 cut(s)	571
GsuI	CTGGAG	2 cut(s)	211, 756
HaeIII	GGCC	5 cut(s)	72, 255, 339, 579, 670
HapII	CCGG	4 cut(s)	48, 69, 75, 336
HgaI	GACGC	3 cut(s)	67, 130, 281
Hin1I	GRCGYC	3 cut(s)	78, 141, 186
Hin1II	CATG	3 cut(s)	25, 31, 608
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	5 cut(s)	40, 83, 367, 584, 769
HpaII	CCGG	4 cut(s)	48, 69, 75, 336
HphI	GGTGA	2 cut(s)	797, 872
Hpy166II	GTNNAC	3 cut(s)	82, 181, 648
Hpy188I	TCNGA	7 cut(s)	16, 172, 199, 366, 372, 479, 553
Hpy188III	TCNNGA	1 cut(s)	508
Hpy8I	GTNNAC	3 cut(s)	82, 181, 648
HpyAV	CCTTC	2 cut(s)	283, 859
HpyCH4III	ACNGT	3 cut(s)	312, 839, 888
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	6 cut(s)	503, 514, 608, 621, 693, 830
HpyF10VI	GCNNNNNNNGC	5 cut(s)	211, 356, 667, 827, 878
HpyF3I	CTNAG	6 cut(s)	210, 285, 363, 506, 777, 868
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	3 cut(s)	78, 141, 186
Hsp92II	CATG	3 cut(s)	25, 31, 608
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	757
LmnI	GCTCC	4 cut(s)	173, 200, 230, 736
Lsp1109I	GCAGC	3 cut(s)	333, 431, 526
LweI	GCATC	7 cut(s)	52, 368, 431, 449, 501, 648, 817
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	4 cut(s)	277, 518, 766, 814
MalI	GATC	1 cut(s)	759
MboI	GATC	1 cut(s)	757
MboII	GAAGA	4 cut(s)	324, 395, 528, 531
MhlI	GDGCHC	2 cut(s)	21, 211
MlsI	TGGCCA	2 cut(s)	255, 579
MluCI	AATT	2 cut(s)	326, 530
MluNI	TGGCCA	2 cut(s)	255, 579
MlyI	GAGTC	3 cut(s)	77, 593, 763
MmeI	TCCRAC	2 cut(s)	57, 195
MnlI	CCTC	6 cut(s)	121, 151, 351, 366, 420, 625
Mox20I	TGGCCA	2 cut(s)	255, 579
MroNI	GCCGGC	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	387
MscI	TGGCCA	2 cut(s)	255, 579
MseI	TTAA	2 cut(s)	428, 731
MslI	CAYNNNNRTG	2 cut(s)	26, 653
Msp20I	TGGCCA	2 cut(s)	255, 579
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	4 cut(s)	48, 69, 75, 336
MspR9I	CCNGG	3 cut(s)	75, 257, 581
MvaI	CCWGG	2 cut(s)	257, 581
MwoI	GCNNNNNNNGC	5 cut(s)	211, 356, 667, 827, 878
NaeI	GCCGGC	1 cut(s)	70
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	757
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	3 cut(s)	25, 31, 608
NlaIV	GGNNCC	2 cut(s)	73, 226
NmuCI	GTSAC	1 cut(s)	766
PaeR7I	CTCGAG	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	5 cut(s)	12, 138, 150, 153, 195
PdiI	GCCGGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	40, 367
Pfl23II	CGTACG	1 cut(s)	216
PflFI	GACNNNGTC	2 cut(s)	28, 176
PkrI	GCNGC	7 cut(s)	67, 137, 140, 323, 421, 516, 663
PleI	GAGTC	3 cut(s)	77, 592, 763
PpsI	GAGTC	3 cut(s)	77, 592, 763
Psp6I	CCWGG	2 cut(s)	255, 579
PspFI	CCCAGC	1 cut(s)	567
PspGI	CCWGG	2 cut(s)	255, 579
PspLI	CGTACG	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	73, 226
PspPI	GGNCC	4 cut(s)	71, 338, 668, 677
PspXI	VCTCGAGB	1 cut(s)	125
PsyI	GACNNNGTC	2 cut(s)	28, 176
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	3 cut(s)	5, 218, 379
RsaNI	GTAC	3 cut(s)	4, 217, 378
RseI	CAYNNNNRTG	2 cut(s)	26, 653
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	428, 731
SatI	GCNGC	7 cut(s)	66, 136, 139, 322, 420, 515, 662
Sau3AI	GATC	1 cut(s)	757
Sau96I	GGNCC	4 cut(s)	71, 338, 668, 677
SchI	GAGTC	3 cut(s)	77, 593, 763
ScrFI	CCNGG	3 cut(s)	75, 257, 581
SduI	GDGCHC	2 cut(s)	21, 211
SfaNI	GCATC	7 cut(s)	52, 368, 431, 449, 501, 648, 817
Sfr274I	CTCGAG	1 cut(s)	125
SgrAI	CRCCGGYG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	677
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	2 cut(s)	26, 653
SmlI	CTYRAG	2 cut(s)	125, 342
SmoI	CTYRAG	2 cut(s)	125, 342
Sse9I	AATT	2 cut(s)	326, 530
SsiI	CCGC	7 cut(s)	45, 66, 135, 138, 350, 490, 661
StyD4I	CCNGG	3 cut(s)	73, 255, 579
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	3 cut(s)	312, 839, 888
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	4 cut(s)	81, 126, 156, 825
TasI	AATT	2 cut(s)	326, 530
TauI	GCSGC	4 cut(s)	68, 138, 141, 664
TfiI	GAWTC	2 cut(s)	40, 367
Tru1I	TTAA	2 cut(s)	428, 731
Tru9I	TTAA	2 cut(s)	428, 731
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	766
TseI	GCWGC	3 cut(s)	321, 419, 514
Tsp45I	GTSAC	1 cut(s)	766
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	306
Tth111I	GACNNNGTC	2 cut(s)	28, 176
VpaK11BI	GGWCC	1 cut(s)	677
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	2 cut(s)	81, 180
XmnI	GAANNNNTTC	1 cut(s)	387
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.