FvH4_5g34500

GATA transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
25131884 .. 25136956
5073 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34500.t2

Sequence Viewer

Length: 888 bp
ATGTACGGCCACGCCCACCCCATGCAGAATCAGATCCCCGCCGGCGGTGCCAACGACGACGACGCGCCCGGCGCCGAGTCCATCGACAACGCCCACATTCACTACGAAGGCCACACGCTCGAGGACGGCGGCGTCGTCGTCGAGGAGGCCACCTCCGATGACGTGTACATTCAAGGCGGAAACACCGACCTCGACATGGCTATTCCTTACGAGGGCTCCAGTCAGCTCACGCTCTCGTTTCGCGGCCAAGTCTACGTCTTTGACTCCGTTACCCCCGAAAAGGTTCAAGCTGTGCTATTACTGCTAGGGGGCTCGGAATCATCTTCTGGTAATCAAGGTGGTGACATGGCAATGCAGAACCAGAGGGCCATAACAGAGTTTCCGGCAGGCTGTACTCAGCCTCATAGAGCAGCGTCGTTAAATAGGTTCCGTCAAAAGAGGAAAGAACGAAACTTTGATAAGAAAGTCAGATACAGTGTCCGTCAGGAAGTTGCACTCAGGATGCAGCGTAACAAGGGGCAATTTACTTCTTCCAAAAAGTCAGATGGAGATTACAGCTGGGGTTCTGGCCCAGAGTCAAGGCAAGATGACAACAATGCAGAAACCTCATGCACGCATTGTGGAACAAGTTCAAAGTGCACGCCAATGATGCGGCGTGGTCCATCTGGTCCAAGGTCTCTTTGCAATGCTTGCGGGCTCTTCTGGGCAAACAGGGGGGTTTTGAGGGATATTTCCAAGAGACCACAGGGTCATTCTCTGGCAGCTGGAGAACAGGGTGAGGCTGAAGCTGATGACTCAGACACTGGAATGGCAATGGTTGTACACGGTGGTGCAAATGTTGTTCCCTTATCTAATGGTGATAACAAGGCTTTAGTTGCTGAAACTTAG

Protein Analysis

296

Amino Acids

31.71

Weight (kDa)

5.48

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 72 - 103 1.5e-13 tify domain
CCT PF06203 136 - 178 2.3e-15 CCT motif
GATA PF00320 204 - 240 3.3e-13 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 131, 747
AccB1I GGYRCC 2 cut(s) 47, 71
AccI GTMKAC 1 cut(s) 252
AccII CGCG 2 cut(s) 65, 243
AciI CCGC 7 cut(s) 39, 45, 129, 177, 243, 652, 693
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 2 cut(s) 7, 244
AcuI CTGAAG 1 cut(s) 804
AcyI GRCGYC 2 cut(s) 72, 132
AfaI GTAC 4 cut(s) 5, 167, 394, 822
AfiI CCNNNNNNNGG 4 cut(s) 44, 196, 212, 280
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 3 cut(s) 173, 287, 633
AjiI CACGTC 1 cut(s) 163
AleI CACNNNNGTG 1 cut(s) 828
AluBI AGCT 5 cut(s) 226, 290, 558, 764, 788
AluI AGCT 5 cut(s) 226, 290, 558, 764, 788
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 2 cut(s) 681, 733
Alw44I GTGCAC 1 cut(s) 637
AlwI GGATC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 803
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 6 cut(s) 7, 109, 147, 244, 366, 568
ApaLI GTGCAC 1 cut(s) 637
ApeKI GCWGC 3 cut(s) 410, 505, 761
Asp700I GAANNNNTTC 2 cut(s) 282, 628
AspLEI GCGC 2 cut(s) 67, 74
AspS9I GGNCC 4 cut(s) 366, 569, 659, 668
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 3 cut(s) 353, 788, 869
AvaI CYCGRG 1 cut(s) 119
AvaII GGWCC 2 cut(s) 659, 668
BaeGI GKGCMC 1 cut(s) 641
BanI GGYRCC 2 cut(s) 47, 71
BanII GRGCYC 3 cut(s) 218, 314, 699
Bbv12I GWGCWC 1 cut(s) 641
BbvI GCAGC 3 cut(s) 422, 517, 773
BccI CCATC 3 cut(s) 89, 539, 670
BceAI ACGGC 2 cut(s) 22, 142
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 681, 733
BfaI CTAG 1 cut(s) 305
BfoI RGCGCY 1 cut(s) 75
BisI GCNGC 6 cut(s) 130, 244, 411, 506, 653, 762
BlsI GCNGC 6 cut(s) 131, 245, 412, 507, 654, 763
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 2 cut(s) 659, 668
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 4 cut(s) 366, 569, 659, 668
BmiI GGNNCC 4 cut(s) 49, 73, 217, 428
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 492, 639
BplI GAGNNNNNCTC 2 cut(s) 137, 169
BpmI CTGGAG 2 cut(s) 202, 786
BpuMI CCSGG 1 cut(s) 69
BsaHI GRCGYC 2 cut(s) 72, 132
BsaI GGTCTC 2 cut(s) 681, 733
BsaJI CCNNGG 1 cut(s) 671
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 196, 212, 280
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 2 cut(s) 219, 808
Bse3DI GCAATG 3 cut(s) 357, 691, 819
BseDI CCNNGG 1 cut(s) 671
BseGI GGATG 1 cut(s) 507
BseLI CCNNNNNNNGG 4 cut(s) 44, 196, 212, 280
BseMI GCAATG 3 cut(s) 357, 691, 819
BseMII CTCAG 3 cut(s) 410, 511, 810
BseNI ACTGG 2 cut(s) 219, 808
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 641
BseXI GCAGC 3 cut(s) 422, 517, 773
BseYI CCCAGC 1 cut(s) 558
Bsh1236I CGCG 2 cut(s) 65, 243
BshFI GGCC 6 cut(s) 9, 111, 149, 246, 368, 570
BshNI GGYRCC 2 cut(s) 47, 71
BsiHKAI GWGCWC 1 cut(s) 641
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 3 cut(s) 42, 69, 383
BslI CCNNNNNNNGG 4 cut(s) 44, 196, 212, 280
BsmAI GTCTC 2 cut(s) 681, 733
BsnI GGCC 6 cut(s) 9, 111, 149, 246, 368, 570
Bso31I GGTCTC 2 cut(s) 681, 733
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 4 cut(s) 218, 314, 641, 699
Bsp1407I TGTACA 2 cut(s) 165, 820
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 7 cut(s) 39, 45, 129, 177, 243, 652, 693
BspANI GGCC 6 cut(s) 9, 111, 149, 246, 368, 570
BspCNI CTCAG 3 cut(s) 409, 510, 809
BspFNI CGCG 2 cut(s) 65, 243
BspLI GGNNCC 4 cut(s) 49, 73, 217, 428
BspPI GGATC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 704
BspT107I GGYRCC 2 cut(s) 47, 71
BspTNI GGTCTC 2 cut(s) 681, 733
BsrDI GCAATG 3 cut(s) 357, 691, 819
BsrFI RCCGGY 1 cut(s) 41
BsrGI TGTACA 2 cut(s) 165, 820
BsrI ACTGG 2 cut(s) 219, 808
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 671
BssMI GATC 1 cut(s) 33
BssNI GRCGYC 2 cut(s) 72, 132
BssT1I CCWWGG 1 cut(s) 671
Bst4CI ACNGT 2 cut(s) 476, 827
Bst6I CTCTTC 1 cut(s) 704
BstACI GRCGYC 2 cut(s) 72, 132
BstAPI GCANNNNNTGC 1 cut(s) 690
BstAUI TGTACA 2 cut(s) 165, 820
BstC8I GCNNGC 6 cut(s) 43, 388, 614, 641, 691, 695
BstDEI CTNAG 4 cut(s) 396, 497, 796, 885
BstF5I GGATG 1 cut(s) 507
BstFNI CGCG 2 cut(s) 65, 243
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 2 cut(s) 67, 74
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 2 cut(s) 681, 733
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 6 cut(s) 47, 71, 301, 649, 690, 875
BstSCI CCNGG 1 cut(s) 67
BstSLI GKGCMC 1 cut(s) 641
BstUI CGCG 2 cut(s) 65, 243
BstV1I GCAGC 3 cut(s) 422, 517, 773
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 6 cut(s) 9, 111, 149, 246, 368, 570
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 507
BtsIMutI CAGTG 2 cut(s) 481, 801
Cac8I GCNNGC 6 cut(s) 43, 388, 614, 641, 691, 695
CaiI CAGNNNCTG 1 cut(s) 803
CfoI GCGC 2 cut(s) 67, 74
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 4 cut(s) 366, 569, 659, 668
CseI GACGC 3 cut(s) 71, 121, 402
Csp6I GTAC 4 cut(s) 4, 166, 393, 821
CviAII CATG 4 cut(s) 22, 196, 346, 609
CviQI GTAC 4 cut(s) 4, 166, 393, 821
DdeI CTNAG 4 cut(s) 396, 497, 796, 885
DinI GGCGCC 1 cut(s) 73
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
DrdI GACNNNNNNGTC 2 cut(s) 131, 747
DseDI GACNNNNNNGTC 2 cut(s) 131, 747
EaeI YGGCCR 2 cut(s) 7, 244
Eam1104I CTCTTC 1 cut(s) 704
EarI CTCTTC 1 cut(s) 704
EciI GGCGGA 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 671
Eco24I GRGCYC 3 cut(s) 218, 314, 699
Eco31I GGTCTC 2 cut(s) 681, 733
Eco47I GGWCC 2 cut(s) 659, 668
Eco57I CTGAAG 1 cut(s) 804
Eco88I CYCGRG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 671
EcoT38I GRGCYC 3 cut(s) 218, 314, 699
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 671
FaeI CATG 4 cut(s) 25, 199, 349, 612
FaiI YATR 6 cut(s) 23, 197, 347, 371, 405, 610
FatI CATG 4 cut(s) 21, 195, 345, 608
FauI CCCGC 2 cut(s) 46, 686
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 6 cut(s) 130, 244, 411, 506, 653, 762
FokI GGATG 1 cut(s) 514
FriOI GRGCYC 3 cut(s) 218, 314, 699
Fsp4HI GCNGC 6 cut(s) 130, 244, 411, 506, 653, 762
FspBI CTAG 1 cut(s) 305
GlaI GCGC 2 cut(s) 66, 73
GluI GCNGC 6 cut(s) 130, 244, 411, 506, 653, 762
GsaI CCCAGC 1 cut(s) 562
GsuI CTGGAG 2 cut(s) 202, 786
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 6 cut(s) 9, 111, 149, 246, 368, 570
HapII CCGG 3 cut(s) 42, 69, 383
HgaI GACGC 3 cut(s) 71, 121, 402
HhaI GCGC 2 cut(s) 67, 74
Hin1I GRCGYC 2 cut(s) 72, 132
Hin1II CATG 4 cut(s) 25, 199, 349, 612
Hin6I GCGC 2 cut(s) 65, 72
HinP1I GCGC 2 cut(s) 65, 72
HinfI GANTC 6 cut(s) 28, 77, 263, 317, 575, 794
HpaII CCGG 3 cut(s) 42, 69, 383
HphI GGTGA 3 cut(s) 353, 788, 869
Hpy166II GTNNAC 4 cut(s) 166, 253, 639, 823
Hpy188I TCNGA 6 cut(s) 33, 157, 316, 470, 544, 799
Hpy188III TCNNGA 2 cut(s) 485, 499
Hpy8I GTNNAC 4 cut(s) 166, 253, 639, 823
Hpy99I CGWCG 7 cut(s) 59, 62, 65, 137, 140, 143, 418
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 2 cut(s) 476, 827
HpyCH4IV ACGT 2 cut(s) 162, 255
HpyCH4V TGCA 9 cut(s) 25, 355, 494, 505, 599, 612, 639, 684, 833
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 71, 301, 649, 690, 875
HpyF3I CTNAG 4 cut(s) 396, 497, 796, 885
HpySE526I ACGT 2 cut(s) 162, 255
Hsp92I GRCGYC 2 cut(s) 72, 132
Hsp92II CATG 4 cut(s) 25, 199, 349, 612
HspAI GCGC 2 cut(s) 65, 72
KasI GGCGCC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Kzo9I GATC 1 cut(s) 33
LguI GCTCTTC 1 cut(s) 704
LmnI GCTCC 1 cut(s) 221
Lsp1109I GCAGC 3 cut(s) 422, 517, 773
LweI GCATC 2 cut(s) 492, 639
MaeI CTAG 1 cut(s) 305
MaeII ACGT 2 cut(s) 162, 255
MaeIII GTNAC 3 cut(s) 268, 341, 509
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 3 cut(s) 315, 522, 691
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 4 cut(s) 218, 314, 641, 699
MluCI AATT 1 cut(s) 521
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 4 cut(s) 86, 257, 584, 788
MreI CGCCGGCG 1 cut(s) 41
MroNI GCCGGC 1 cut(s) 41
MroXI GAANNNNTTC 2 cut(s) 282, 628
MseI TTAA 1 cut(s) 419
MslI CAYNNNNRTG 4 cut(s) 350, 644, 806, 828
MspA1I CMGCKG 2 cut(s) 558, 764
MspI CCGG 3 cut(s) 42, 69, 383
MspR9I CCNGG 1 cut(s) 69
MvnI CGCG 2 cut(s) 65, 243
MwoI GCNNNNNNNGC 6 cut(s) 47, 71, 301, 649, 690, 875
NaeI GCCGGC 1 cut(s) 43
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 1 cut(s) 69
NdeII GATC 1 cut(s) 33
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 4 cut(s) 25, 199, 349, 612
NlaIV GGNNCC 4 cut(s) 49, 73, 217, 428
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 341
OliI CACNNNNGTG 1 cut(s) 828
PaeR7I CTCGAG 1 cut(s) 119
PciSI GCTCTTC 1 cut(s) 704
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 43
PdmI GAANNNNTTC 2 cut(s) 282, 628
PfeI GAWTC 2 cut(s) 28, 317
PkrI GCNGC 6 cut(s) 131, 245, 412, 507, 654, 763
PleI GAGTC 4 cut(s) 85, 257, 583, 788
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 4 cut(s) 85, 257, 583, 788
PspFI CCCAGC 1 cut(s) 558
PspN4I GGNNCC 4 cut(s) 49, 73, 217, 428
PspPI GGNCC 4 cut(s) 366, 569, 659, 668
PspXI VCTCGAGB 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 1 cut(s) 33
PvuII CAGCTG 2 cut(s) 558, 764
RsaI GTAC 4 cut(s) 5, 167, 394, 822
RsaNI GTAC 4 cut(s) 4, 166, 393, 821
RseI CAYNNNNRTG 4 cut(s) 350, 644, 806, 828
SapI GCTCTTC 1 cut(s) 704
SaqAI TTAA 1 cut(s) 419
SatI GCNGC 6 cut(s) 130, 244, 411, 506, 653, 762
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 4 cut(s) 366, 569, 659, 668
SchI GAGTC 4 cut(s) 86, 257, 584, 788
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 4 cut(s) 218, 314, 641, 699
SfaNI GCATC 2 cut(s) 492, 639
SfoI GGCGCC 1 cut(s) 73
Sfr274I CTCGAG 1 cut(s) 119
SgrAI CRCCGGYG 1 cut(s) 41
SinI GGWCC 2 cut(s) 659, 668
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 4 cut(s) 350, 644, 806, 828
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 521
SsiI CCGC 7 cut(s) 39, 45, 129, 177, 243, 652, 693
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 1 cut(s) 671
TaaI ACNGT 2 cut(s) 476, 827
TaiI ACGT 2 cut(s) 165, 258
TaqI TCGA 4 cut(s) 84, 120, 141, 192
TasI AATT 1 cut(s) 521
TatI WGTACW 3 cut(s) 165, 392, 820
TauI GCSGC 3 cut(s) 132, 246, 655
TfiI GAWTC 2 cut(s) 28, 317
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TscAI CASTG 2 cut(s) 481, 808
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 3 cut(s) 410, 505, 761
Tsp45I GTSAC 1 cut(s) 341
TspGWI ACGGA 3 cut(s) 256, 419, 470
TspRI CASTG 2 cut(s) 481, 808
VneI GTGCAC 1 cut(s) 637
VpaK11BI GGWCC 2 cut(s) 659, 668
XhoI CTCGAG 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 252
XmnI GAANNNNTTC 2 cut(s) 282, 628
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.