Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009114

Physical Location & Seq

Genomic Coordinates Forward (+)

9762059 .. 9766711

Gene Structure 4653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCTATTCCTTACGAGGGCTCCAGTCAGCTCACGCTCTCGTTTCGTGGCCAAGTCTACGTCTTTGACTCCGTTACGCCTGATAAGGTTCAAGCTGTGCTATTGCTGTTGGGGGGCTCGGAATCATCTTCTGGTGCCCAAGGTGTAGACATGACAACTCAGAATCAGAGGGCCATAACGGAGTTTCCAACAGGCTGTAATCAGCCTCATAGAGCAGCGTCGTTAATTAGGTTTCGTCAAAAGAGGAAAGAACGATGCTTTGATAAGAAAGTCAGATATGGTGTCCGTCAAGAAGTTGCCCTCAGGATGCAGCGTAACAAGGGGCAATTTACTTCTTCCAAAAAGTCAGATGGAGATTACAGCTGGGGTTCTGGCCAAGAGTCAAGGCAAGATGACAGCAATGCAGAAACCTCATGCACACATTGTGGAACAAGTTCAAAGTGCACACCAATGATGCGGCGTGGTCCATCTGGTCCAAGGTCTCTTTGCAATGCTTGTGGGCTCTTCTGGGCAAACAGGGGGGTTTTGAGGGATATTACCAAGAGACTGCCGGGTCCTTCTCAGGCTGCTGGAGAACAGGGTGAGGCTGAAGCTGATGACTCAGACACTGGAATGGCCATCGTTGTACACAATGCTGCAGATCCTGTTCCCTTATCTAATGGTGATAACAAGGCTTTAGTTGCTGAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

230

Amino Acids

24.91

Weight (kDa)

8.69

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	7 - 38	1.4e-13	tify domain
CCT	PF06203	71 - 113	3.1e-15	CCT motif
GATA	PF00320	139 - 175	2.3e-13	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24470 AT4G24470 AT4G24470
fragaria_vesca	FvH4_5g34500 FvH4_5g34500
malus_domestica	MD08G1200800.v1.1 MD15G1387700.v1.1
prunus_persica	Prupe.1G534300_v2.0.a1
pyrus_communis	pycom08g17440 pycom15g34800
rosa_chinensis	RchiOBHm_Chr7g0235141
rosa_laevigata	RLG00000001179
rosa_multiflora	Rmu_sc0002239.1_g000022 Rmu_sc0007762.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226250
rosa_rugosa	Rorug07G0288200.1 Rorug07G0288300
rosa_samantha	Rh7AG442900 Rh7BG415600 Rh7CG463800 Rh7DG432600
rosa_wichuraiana	Rw7G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	552
AccB1I	GGYRCC	1 cut(s)	134
AccI	GTMKAC	2 cut(s)	57, 147
AciI	CCGC	1 cut(s)	457
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	3 cut(s)	49, 373, 615
AcuI	CTGAAG	1 cut(s)	609
AdeI	CACNNNGTG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	627
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	2 cut(s)	92, 438
AluBI	AGCT	4 cut(s)	31, 95, 363, 593
AluI	AGCT	4 cut(s)	31, 95, 363, 593
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	2 cut(s)	486, 538
Alw44I	GTGCAC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	635
AlwNI	CAGNNNCTG	2 cut(s)	608, 644
AoxI	GGCC	4 cut(s)	49, 171, 373, 615
ApaLI	GTGCAC	1 cut(s)	442
ApeKI	GCWGC	4 cut(s)	215, 310, 566, 635
Asp700I	GAANNNNTTC	1 cut(s)	433
AspS9I	GGNCC	4 cut(s)	171, 464, 473, 554
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	2 cut(s)	593, 674
AvaII	GGWCC	3 cut(s)	464, 473, 554
AxyI	CCTNAGG	1 cut(s)	302
BaeGI	GKGCMC	2 cut(s)	139, 446
BalI	TGGCCA	3 cut(s)	51, 375, 617
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	3 cut(s)	23, 119, 504
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	4 cut(s)	227, 322, 553, 622
BccI	CCATC	3 cut(s)	344, 475, 626
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	2 cut(s)	486, 538
BfmI	CTRYAG	1 cut(s)	636
BisI	GCNGC	5 cut(s)	216, 311, 458, 567, 636
BlsI	GCNGC	5 cut(s)	217, 312, 459, 568, 637
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	3 cut(s)	464, 473, 554
BmgT120I	GGNCC	4 cut(s)	171, 464, 473, 554
BmiI	GGNNCC	3 cut(s)	22, 136, 555
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	3 cut(s)	245, 297, 444
BpmI	CTGGAG	2 cut(s)	7, 591
BpuMI	CCSGG	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	139, 476
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	24, 613
Bse21I	CCTNAGG	1 cut(s)	302
Bse3DI	GCAATG	2 cut(s)	406, 496
BseDI	CCNNGG	2 cut(s)	139, 476
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	2 cut(s)	406, 496
BseMII	CTCAG	4 cut(s)	173, 316, 575, 615
BseNI	ACTGG	2 cut(s)	24, 613
BseSI	GKGCMC	2 cut(s)	139, 446
BseXI	GCAGC	4 cut(s)	227, 322, 553, 622
BseYI	CCCAGC	1 cut(s)	363
BshFI	GGCC	4 cut(s)	51, 173, 375, 617
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	446
BsiSI	CCGG	1 cut(s)	551
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	2 cut(s)	486, 538
BsnI	GGCC	4 cut(s)	51, 173, 375, 617
Bso31I	GGTCTC	1 cut(s)	486
Bsp1286I	GDGCHC	5 cut(s)	23, 119, 139, 446, 504
Bsp1407I	TGTACA	1 cut(s)	625
Bsp143I	GATC	1 cut(s)	640
BspACI	CCGC	1 cut(s)	457
BspANI	GGCC	4 cut(s)	51, 173, 375, 617
BspCNI	CTCAG	4 cut(s)	172, 315, 574, 614
BspLI	GGNNCC	3 cut(s)	22, 136, 555
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	1 cut(s)	635
BspQI	GCTCTTC	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	486
BsrDI	GCAATG	2 cut(s)	406, 496
BsrGI	TGTACA	1 cut(s)	625
BsrI	ACTGG	2 cut(s)	24, 613
BssECI	CCNNGG	2 cut(s)	139, 476
BssMI	GATC	1 cut(s)	640
BssT1I	CCWWGG	2 cut(s)	139, 476
Bst6I	CTCTTC	1 cut(s)	509
BstAUI	TGTACA	1 cut(s)	625
BstDEI	CTNAG	5 cut(s)	159, 302, 561, 601, 690
BstF5I	GGATG	1 cut(s)	312
BstKTI	GATC	1 cut(s)	643
BstMAI	GTCTC	2 cut(s)	486, 538
BstMBI	GATC	1 cut(s)	640
BstMWI	GCNNNNNNNGC	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	636
BstSLI	GKGCMC	2 cut(s)	139, 446
BstV1I	GCAGC	4 cut(s)	227, 322, 553, 622
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
Bsu36I	CCTNAGG	1 cut(s)	302
BsuRI	GGCC	4 cut(s)	51, 173, 375, 617
BtsCI	GGATG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	606
CaiI	CAGNNNCTG	2 cut(s)	608, 644
Cfr13I	GGNCC	4 cut(s)	171, 464, 473, 554
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	626
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	2 cut(s)	151, 414
CviQI	GTAC	1 cut(s)	626
DdeI	CTNAG	5 cut(s)	159, 302, 561, 601, 690
DpnI	GATC	1 cut(s)	642
DpnII	GATC	1 cut(s)	640
DraIII	CACNNNGTG	1 cut(s)	425
DrdI	GACNNNNNNGTC	1 cut(s)	552
DseDI	GACNNNNNNGTC	1 cut(s)	552
EaeI	YGGCCR	3 cut(s)	49, 373, 615
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
Eco130I	CCWWGG	2 cut(s)	139, 476
Eco24I	GRGCYC	3 cut(s)	23, 119, 504
Eco31I	GGTCTC	1 cut(s)	486
Eco47I	GGWCC	3 cut(s)	464, 473, 554
Eco57I	CTGAAG	1 cut(s)	609
Eco81I	CCTNAGG	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	554
EcoT14I	CCWWGG	2 cut(s)	139, 476
EcoT38I	GRGCYC	3 cut(s)	23, 119, 504
ErhI	CCWWGG	2 cut(s)	139, 476
FaeI	CATG	2 cut(s)	154, 417
FaiI	YATR	5 cut(s)	152, 176, 210, 279, 415
FatI	CATG	2 cut(s)	150, 413
FblI	GTMKAC	2 cut(s)	57, 147
Fnu4HI	GCNGC	5 cut(s)	216, 311, 458, 567, 636
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	3 cut(s)	23, 119, 504
Fsp4HI	GCNGC	5 cut(s)	216, 311, 458, 567, 636
GluI	GCNGC	5 cut(s)	216, 311, 458, 567, 636
GsaI	CCCAGC	1 cut(s)	367
GsuI	CTGGAG	2 cut(s)	7, 591
HaeIII	GGCC	4 cut(s)	51, 173, 375, 617
HapII	CCGG	1 cut(s)	551
HgaI	GACGC	1 cut(s)	207
Hin1II	CATG	2 cut(s)	154, 417
HinfI	GANTC	5 cut(s)	68, 122, 163, 380, 599
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	2 cut(s)	593, 674
Hpy166II	GTNNAC	4 cut(s)	58, 148, 444, 628
Hpy188I	TCNGA	6 cut(s)	121, 162, 168, 275, 349, 604
Hpy188III	TCNNGA	2 cut(s)	290, 304
Hpy8I	GTNNAC	4 cut(s)	58, 148, 444, 628
Hpy99I	CGWCG	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	567
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	6 cut(s)	310, 404, 417, 444, 489, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	680
HpyF3I	CTNAG	5 cut(s)	159, 302, 561, 601, 690
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	154, 417
Kzo9I	GATC	1 cut(s)	640
LguI	GCTCTTC	1 cut(s)	509
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	4 cut(s)	227, 322, 553, 622
LweI	GCATC	3 cut(s)	245, 297, 444
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	73, 314
MalI	GATC	1 cut(s)	642
MboI	GATC	1 cut(s)	640
MboII	GAAGA	3 cut(s)	120, 327, 496
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	5 cut(s)	23, 119, 139, 446, 504
MlsI	TGGCCA	3 cut(s)	51, 375, 617
MluCI	AATT	2 cut(s)	225, 326
MluNI	TGGCCA	3 cut(s)	51, 375, 617
MlyI	GAGTC	3 cut(s)	62, 389, 593
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	8 cut(s)	10, 162, 216, 237, 311, 421, 522, 577
Mox20I	TGGCCA	3 cut(s)	51, 375, 617
MroXI	GAANNNNTTC	1 cut(s)	433
MscI	TGGCCA	3 cut(s)	51, 375, 617
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	2 cut(s)	449, 611
Msp20I	TGGCCA	3 cut(s)	51, 375, 617
MspA1I	CMGCKG	1 cut(s)	363
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	1 cut(s)	680
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	1 cut(s)	640
NlaIII	CATG	2 cut(s)	154, 417
NlaIV	GGNNCC	3 cut(s)	22, 136, 555
PciSI	GCTCTTC	1 cut(s)	509
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	2 cut(s)	122, 163
PkrI	GCNGC	5 cut(s)	217, 312, 459, 568, 637
PleI	GAGTC	3 cut(s)	62, 388, 593
PpsI	GAGTC	3 cut(s)	62, 388, 593
PpuMI	RGGWCCY	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	554
PspFI	CCCAGC	1 cut(s)	363
PspN4I	GGNNCC	3 cut(s)	22, 136, 555
PspPI	GGNCC	4 cut(s)	171, 464, 473, 554
PspPPI	RGGWCCY	1 cut(s)	554
PstI	CTGCAG	1 cut(s)	640
PstNI	CAGNNNCTG	2 cut(s)	608, 644
PsuI	RGATCY	1 cut(s)	640
PvuII	CAGCTG	1 cut(s)	363
RsaI	GTAC	1 cut(s)	627
RsaNI	GTAC	1 cut(s)	626
RseI	CAYNNNNRTG	2 cut(s)	449, 611
SapI	GCTCTTC	1 cut(s)	509
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	5 cut(s)	216, 311, 458, 567, 636
Sau3AI	GATC	1 cut(s)	640
Sau96I	GGNCC	4 cut(s)	171, 464, 473, 554
SchI	GAGTC	3 cut(s)	62, 389, 593
ScrFI	CCNGG	1 cut(s)	552
SduI	GDGCHC	5 cut(s)	23, 119, 139, 446, 504
SfaNI	GCATC	3 cut(s)	245, 297, 444
SfcI	CTRYAG	1 cut(s)	636
SinI	GGWCC	3 cut(s)	464, 473, 554
SmiMI	CAYNNNNRTG	2 cut(s)	449, 611
Sse9I	AATT	2 cut(s)	225, 326
SsiI	CCGC	1 cut(s)	457
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	2 cut(s)	139, 476
TaiI	ACGT	1 cut(s)	63
TasI	AATT	2 cut(s)	225, 326
TatI	WGTACW	1 cut(s)	625
TauI	GCSGC	1 cut(s)	460
TfiI	GAWTC	2 cut(s)	122, 163
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	4 cut(s)	215, 310, 566, 635
TspGWI	ACGGA	3 cut(s)	61, 194, 275
TspRI	CASTG	1 cut(s)	613
VneI	GTGCAC	1 cut(s)	442
VpaK11BI	GGWCC	3 cut(s)	464, 473, 554
XmiI	GTMKAC	2 cut(s)	57, 147
XmnI	GAANNNNTTC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.