Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009114

Physical Location & Seq

Genomic Coordinates Forward (+)

26040878 .. 26046162

Gene Structure 5285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1200800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTCAATGTACGGACACTCGCAGGACATGACCATGCCCAACCCGATCCCCGCCTGTGACGACGACGATGCCGGCGCCGCTGACTCCATCGACAACGCCCACATTCAATACGATTCCCATACGCTCGAGGACGGCGGCATCGTCGTCGTTGAGGACGGTAGCTCCGACGGCGTCTACGTTCAGGGCGGCTCCGCTAGCTCCGAATTGCGTGGTCAGCCTTACGACGGCGCCAGCCAGCTCACGCTTTCGTTTCGCGGACAGGTCTTTGTTTTTGACGCGGTTACGCCCGAAAAGGTTCAAGCGGTGTTATTACTGTTGGGAGGAAATGAATTGTCGCCTAACGCTCAAGGGACGGAGTTGGCATCTCAGAATCCGAGGGCTACAGAAGATTTTCCCCGATGTAGTCAACCTCACAGAGCAGCATCATTATTTAGGTTTCGGCAAAAGAGAAAAGAGCGATGCTTTGACAAAAAAGTGAGATATGGTGTTCGTCAGGAAGTAGCACTCAGGATGCAACGAAACAAGGGGCAATTTTCTTCCTCCAAAAAGTCAGATGGAGATGGTAACTGGTCCAATGGCCAGGAGTCGGGGCAGGAAGATACCCATGCAGAAACCTTCTGCAAGCATTGTGGAATAAGTTCAAAGTCCACACCAATGATGCGGCGCGGCCCATCTGGTCCGAGGTCTCTGTGCAATGCTTGTGGGCTTTTTTGGGCAAACAGGGGTTCTATGAGGGAACTTTCCAAGAGAAGCCATGATGTCAAACGAACCGAGCAGGGTCGTGACTCTGATACTAAAGATTTGGACAGCGTAACTGCTATCGATGCACACAACAATCTTGTTCCCTTCTCTAATGGTGATAACTCGGCTTTAGTTGCTGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

296

Amino Acids

32.2

Weight (kDa)

5.78

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	76 - 107	1.3e-12	tify domain
CCT	PF06203	139 - 181	3.4e-14	CCT motif
GATA	PF00320	207 - 244	1.5e-12	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24470 AT4G24470 AT4G24470
fragaria_vesca	FvH4_5g34500 FvH4_5g34500
malus_domestica	MD08G1200800.v1.1 MD15G1387700.v1.1
prunus_persica	Prupe.1G534300_v2.0.a1
pyrus_communis	pycom08g17440 pycom15g34800
rosa_chinensis	RchiOBHm_Chr7g0235141
rosa_laevigata	RLG00000001179
rosa_multiflora	Rmu_sc0002239.1_g000022 Rmu_sc0007762.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226250
rosa_rugosa	Rorug07G0288200.1 Rorug07G0288300
rosa_samantha	Rh7AG442900 Rh7BG415600 Rh7CG463800 Rh7DG432600
rosa_wichuraiana	Rw7G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	74, 227
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	3 cut(s)	255, 278, 666
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	577
AcyI	GRCGYC	3 cut(s)	75, 171, 228
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	224, 586
AgsI	TTSAA	3 cut(s)	107, 299, 642
AjnI	CCWGG	1 cut(s)	579
AluBI	AGCT	3 cut(s)	162, 198, 238
AluI	AGCT	3 cut(s)	162, 198, 238
Alw26I	GTCTC	1 cut(s)	690
AlwI	GGATC	1 cut(s)	40
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	577, 667
ApeKI	GCWGC	1 cut(s)	419
Asp700I	GAANNNNTTC	3 cut(s)	294, 390, 637
AspLEI	GCGC	3 cut(s)	77, 230, 666
AspS9I	GGNCC	3 cut(s)	570, 668, 677
AsuHPI	GGTGA	1 cut(s)	869
AsuNHI	GCTAGC	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	570, 677
BalI	TGGCCA	1 cut(s)	579
BanI	GGYRCC	2 cut(s)	74, 227
BbvI	GCAGC	1 cut(s)	431
BccI	CCATC	4 cut(s)	95, 548, 554, 679
BceAI	ACGGC	3 cut(s)	148, 184, 241
BcgI	CGANNNNNNTGC	4 cut(s)	50, 84, 127, 161
BciT130I	CCWGG	1 cut(s)	581
BcoDI	GTCTC	1 cut(s)	690
BfaI	CTAG	2 cut(s)	195, 886
BfmI	CTRYAG	1 cut(s)	381
BfoI	RGCGCY	2 cut(s)	78, 231
BisI	GCNGC	6 cut(s)	78, 136, 187, 420, 662, 667
BlsI	GCNGC	6 cut(s)	79, 137, 188, 421, 663, 668
Bme1390I	CCNGG	1 cut(s)	581
Bme18I	GGWCC	2 cut(s)	570, 677
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	3 cut(s)	570, 668, 677
BmiI	GGNNCC	3 cut(s)	76, 190, 229
BmrFI	CCNGG	1 cut(s)	581
BmsI	GCATC	8 cut(s)	58, 147, 371, 431, 449, 501, 648, 814
BmtI	GCTAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	330
Bsa29I	ATCGAT	1 cut(s)	822
BsaHI	GRCGYC	3 cut(s)	75, 171, 228
BsaI	GGTCTC	1 cut(s)	690
BsaJI	CCNNGG	2 cut(s)	374, 680
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 586
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	572
Bse3DI	GCAATG	1 cut(s)	700
BseBI	CCWGG	1 cut(s)	581
BseCI	ATCGAT	1 cut(s)	822
BseDI	CCNNGG	2 cut(s)	374, 680
BseGI	GGATG	1 cut(s)	516
BseLI	CCNNNNNNNGG	2 cut(s)	224, 586
BseMI	GCAATG	1 cut(s)	700
BseMII	CTCAG	2 cut(s)	380, 520
BseNI	ACTGG	1 cut(s)	572
BseXI	GCAGC	1 cut(s)	431
Bsh1236I	CGCG	3 cut(s)	255, 278, 666
BshFI	GGCC	2 cut(s)	579, 669
BshNI	GGYRCC	2 cut(s)	74, 227
BshVI	ATCGAT	1 cut(s)	822
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	224, 586
BsmAI	GTCTC	1 cut(s)	690
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	579, 669
Bso31I	GGTCTC	1 cut(s)	690
BsoBI	CYCGRG	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	45
BspANI	GGCC	2 cut(s)	579, 669
BspCNI	CTCAG	2 cut(s)	379, 519
BspDI	ATCGAT	1 cut(s)	822
BspFNI	CGCG	3 cut(s)	255, 278, 666
BspLI	GGNNCC	3 cut(s)	76, 190, 229
BspOI	GCTAGC	1 cut(s)	198
BspPI	GGATC	1 cut(s)	40
BspT107I	GGYRCC	2 cut(s)	74, 227
BspTNI	GGTCTC	1 cut(s)	690
BsrDI	GCAATG	1 cut(s)	700
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	572
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	374, 680
BssMI	GATC	1 cut(s)	45
BssNI	GRCGYC	3 cut(s)	75, 171, 228
Bst2UI	CCWGG	1 cut(s)	581
Bst4CI	ACNGT	2 cut(s)	158, 315
BstACI	GRCGYC	3 cut(s)	75, 171, 228
BstC8I	GCNNGC	5 cut(s)	73, 196, 232, 236, 623
BstDEI	CTNAG	2 cut(s)	366, 506
BstF5I	GGATG	1 cut(s)	516
BstFNI	CGCG	3 cut(s)	255, 278, 666
BstH2I	RGCGCY	2 cut(s)	78, 231
BstHHI	GCGC	3 cut(s)	77, 230, 666
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	690
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 168, 195, 214, 824, 875
BstNI	CCWGG	1 cut(s)	581
BstSCI	CCNGG	1 cut(s)	579
BstSFI	CTRYAG	1 cut(s)	381
BstUI	CGCG	3 cut(s)	255, 278, 666
BstV1I	GCAGC	1 cut(s)	431
Bsu15I	ATCGAT	1 cut(s)	822
BsuRI	GGCC	2 cut(s)	579, 669
BsuTUI	ATCGAT	1 cut(s)	822
BtgZI	GCGATG	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	516
Cac8I	GCNNGC	5 cut(s)	73, 196, 232, 236, 623
CfoI	GCGC	3 cut(s)	77, 230, 666
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	3 cut(s)	570, 668, 677
ClaI	ATCGAT	1 cut(s)	822
CseI	GACGC	2 cut(s)	160, 284
Csp6I	GTAC	1 cut(s)	10
CspCI	CAANNNNNGTGG	4 cut(s)	610, 645, 682, 717
CviAII	CATG	4 cut(s)	28, 34, 605, 755
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	2 cut(s)	366, 506
DinI	GGCGCC	2 cut(s)	76, 229
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	690
Eco47I	GGWCC	2 cut(s)	570, 677
Eco88I	CYCGRG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	579
EgeI	GGCGCC	2 cut(s)	76, 229
EheI	GGCGCC	2 cut(s)	76, 229
FaeI	CATG	4 cut(s)	31, 37, 608, 758
FaiI	YATR	7 cut(s)	29, 35, 120, 483, 606, 731, 756
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	4 cut(s)	27, 33, 604, 754
FauI	CCCGC	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	6 cut(s)	78, 136, 187, 420, 662, 667
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	6 cut(s)	78, 136, 187, 420, 662, 667
FspBI	CTAG	2 cut(s)	195, 886
GlaI	GCGC	3 cut(s)	76, 229, 665
GluI	GCNGC	6 cut(s)	78, 136, 187, 420, 662, 667
HaeII	RGCGCY	2 cut(s)	78, 231
HaeIII	GGCC	2 cut(s)	579, 669
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	2 cut(s)	160, 284
HhaI	GCGC	3 cut(s)	77, 230, 666
Hin1I	GRCGYC	3 cut(s)	75, 171, 228
Hin1II	CATG	4 cut(s)	31, 37, 608, 758
Hin6I	GCGC	3 cut(s)	75, 228, 664
HinP1I	GCGC	3 cut(s)	75, 228, 664
HincII	GTYRAC	1 cut(s)	407
HindII	GTYRAC	1 cut(s)	407
HinfI	GANTC	5 cut(s)	83, 113, 370, 584, 785
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	869
Hpy166II	GTNNAC	3 cut(s)	175, 407, 648
Hpy188I	TCNGA	7 cut(s)	166, 202, 369, 375, 553, 681, 790
Hpy188III	TCNNGA	3 cut(s)	494, 508, 782
Hpy8I	GTNNAC	3 cut(s)	175, 407, 648
Hpy99I	CGWCG	6 cut(s)	65, 68, 146, 149, 170, 227
HpyAV	CCTTC	2 cut(s)	625, 856
HpyCH4III	ACNGT	2 cut(s)	158, 315
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	5 cut(s)	514, 608, 621, 693, 827
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 168, 195, 214, 824, 875
HpyF3I	CTNAG	2 cut(s)	366, 506
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	3 cut(s)	75, 171, 228
Hsp92II	CATG	4 cut(s)	31, 37, 608, 758
HspAI	GCGC	3 cut(s)	75, 228, 664
KasI	GGCGCC	2 cut(s)	74, 227
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	3 cut(s)	167, 194, 203
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	8 cut(s)	58, 147, 371, 431, 449, 501, 648, 814
MaeI	CTAG	2 cut(s)	195, 886
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	5 cut(s)	56, 280, 563, 782, 811
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	3 cut(s)	398, 528, 608
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	3 cut(s)	203, 329, 530
MluNI	TGGCCA	1 cut(s)	579
Mly113I	GGCGCC	2 cut(s)	75, 228
MlyI	GAGTC	3 cut(s)	77, 593, 779
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	8 cut(s)	121, 145, 314, 369, 420, 550, 675, 726
Mox20I	TGGCCA	1 cut(s)	579
MroNI	GCCGGC	1 cut(s)	71
MroXI	GAANNNNTTC	3 cut(s)	294, 390, 637
MscI	TGGCCA	1 cut(s)	579
MslI	CAYNNNNRTG	2 cut(s)	32, 653
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	581
MvnI	CGCG	3 cut(s)	255, 278, 666
MwoI	GCNNNNNNNGC	6 cut(s)	77, 168, 195, 214, 824, 875
NaeI	GCCGGC	1 cut(s)	73
NarI	GGCGCC	2 cut(s)	75, 228
NdeII	GATC	1 cut(s)	45
NgoMIV	GCCGGC	1 cut(s)	71
NheI	GCTAGC	1 cut(s)	194
NlaIII	CATG	4 cut(s)	31, 37, 608, 758
NlaIV	GGNNCC	3 cut(s)	76, 190, 229
NmeAIII	GCCGAG	1 cut(s)	845
NmuCI	GTSAC	2 cut(s)	56, 782
PaeR7I	CTCGAG	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	3 cut(s)	138, 162, 174
PdiI	GCCGGC	1 cut(s)	73
PdmI	GAANNNNTTC	3 cut(s)	294, 390, 637
PfeI	GAWTC	2 cut(s)	113, 370
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	6 cut(s)	79, 137, 188, 421, 663, 668
PleI	GAGTC	3 cut(s)	77, 592, 779
PluTI	GGCGCC	2 cut(s)	78, 231
PpsI	GAGTC	3 cut(s)	77, 592, 779
Psp6I	CCWGG	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	579
PspN4I	GGNNCC	3 cut(s)	76, 190, 229
PspPI	GGNCC	3 cut(s)	570, 668, 677
PspXI	VCTCGAGB	1 cut(s)	125
PsyI	GACNNNGTC	1 cut(s)	170
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	2 cut(s)	32, 653
SatI	GCNGC	6 cut(s)	78, 136, 187, 420, 662, 667
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	3 cut(s)	570, 668, 677
SchI	GAGTC	3 cut(s)	77, 593, 779
ScrFI	CCNGG	1 cut(s)	581
SfaNI	GCATC	8 cut(s)	58, 147, 371, 431, 449, 501, 648, 814
SfcI	CTRYAG	1 cut(s)	381
SfoI	GGCGCC	2 cut(s)	76, 229
Sfr274I	CTCGAG	1 cut(s)	125
SinI	GGWCC	2 cut(s)	570, 677
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	2 cut(s)	32, 653
SmlI	CTYRAG	2 cut(s)	125, 345
SmoI	CTYRAG	2 cut(s)	125, 345
Sse9I	AATT	3 cut(s)	203, 329, 530
SspDI	GGCGCC	2 cut(s)	74, 227
SspMI	CTAG	2 cut(s)	195, 886
StyD4I	CCNGG	1 cut(s)	579
TaaI	ACNGT	2 cut(s)	158, 315
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	3 cut(s)	90, 126, 822
TasI	AATT	3 cut(s)	203, 329, 530
TauI	GCSGC	5 cut(s)	80, 138, 189, 664, 669
TfiI	GAWTC	2 cut(s)	113, 370
TseFI	GTSAC	2 cut(s)	56, 782
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	2 cut(s)	56, 782
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	2 cut(s)	27, 368
Tth111I	GACNNNGTC	1 cut(s)	170
VpaK11BI	GGWCC	2 cut(s)	570, 677
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	3 cut(s)	294, 390, 637
XspI	CTAG	2 cut(s)	195, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.