MD15G1387700.v1.1

GATA transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
47972928 .. 47976735
3808 bp
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UTR
Exon/CDS
Intron
MD15G1387700.v1.1.491

Sequence Viewer

Length: 921 bp
ATGACCATCGATTCGATTCGTGAGCCTCCTCCAATGTCAATGTACGGACACTCTCAGGACATGACCATGCCAAACCCGATCCCCGCCTGCGACGACGACGATGCCGGCGCCGCAGACTCCATCGACAACGCCCACATTCAATACGATTCCCATACGCTCGAGGACGGCGGCATCGTCGTCGTTGAGGACGTTAGCTCCGACGGCGTCTACGTTCAAGGCGGCTCCGCTAGCTCCGAATTGCGCGGTCCGCCTTACGACGGCTCCAGCCAGCTAACGCTGTCGTTTCGCGGCCAGGTCTTTGTTTTTGACGCCGTTACGCCTGAAAAGGTTCAAGCAGTGTTATTACTGTTGGGAGGTAATGAATTATCTCCTAGCGCTCAAGGGACGGAGTTGGCATCTCAGAATCAGAGGGCTATGGAAGATTATCCCCGATGTAGTCAACCTCACAGAGCAGCGTCATTAATTAGGTTTCGTCAAAAGAGAAAAGAGCGATGCTTTGACAAAAAAGTGAGATATGGTGTTCGTCAAGAAGTAGCACTCAGGATGCAACGAAACAAGGGGCAATTTTCTTCCTCCAAAAGGTCAGATGGAGATAGTAACTGGTCTGCTGGCCAAGAATCAGGGCAGGAAGATTGCCATGCCGAAACCTCCTGCAAGCATTGTGGAATAAGTTCAAAGTCCACACCAATGATGCGGCGCGGCCCATCTGGTCCTAGGTCTCTTTGCAATGCTTGTGGGCTTTTTTGGGCAAACAGGGGGGGTTTAAGGGAACTTTCCAAGAGAAGCCATGATATCAAACGAATTGAACAGGGTGGTGAACCTGATACTAAAGATTTGGACAGCGTAACCGCCATCGATGCACACAACAATCTTGTTCCCTTCTCTAATGGTGATAACTCAGCTTTAGTTGCCGAAAACTAG

Protein Analysis

307

Amino Acids

33.34

Weight (kDa)

5.53

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 87 - 118 7.3e-13 tify domain
CCT PF06203 150 - 192 1e-14 CCT motif
GATA PF00320 218 - 253 3e-12 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 207
AccII CGCG 3 cut(s) 243, 288, 699
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 2 cut(s) 289, 610
AcyI GRCGYC 3 cut(s) 108, 204, 309
AfaI GTAC 1 cut(s) 44
AfeI AGCGCT 1 cut(s) 376
AfiI CCNNNNNNNGG 2 cut(s) 257, 579
AgsI TTSAA 5 cut(s) 140, 215, 332, 675, 806
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 4 cut(s) 195, 231, 271, 902
AluI AGCT 4 cut(s) 195, 231, 271, 902
Alw26I GTCTC 1 cut(s) 723
AlwI GGATC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 158
Aor51HI AGCGCT 1 cut(s) 376
AoxI GGCC 3 cut(s) 289, 610, 700
ApeKI GCWGC 1 cut(s) 452
ArsI GACNNNNNNTTYG 1 cut(s) 27
AseI ATTAAT 1 cut(s) 461
Asp700I GAANNNNTTC 2 cut(s) 327, 670
AspA2I CCTAGG 1 cut(s) 713
AspLEI GCGC 4 cut(s) 110, 243, 377, 699
AspS9I GGNCC 3 cut(s) 245, 701, 710
AsuHPI GGTGA 2 cut(s) 827, 902
AsuNHI GCTAGC 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 2 cut(s) 245, 710
AvrII CCTAGG 1 cut(s) 713
BalI TGGCCA 1 cut(s) 612
BanI GGYRCC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 464
BccI CCATC 5 cut(s) 14, 128, 581, 712, 860
BceAI ACGGC 4 cut(s) 181, 217, 274, 296
BcgI CGANNNNNNTGC 4 cut(s) 83, 117, 160, 194
BciT130I CCWGG 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 723
BfaI CTAG 4 cut(s) 228, 372, 714, 919
BfoI RGCGCY 2 cut(s) 111, 378
BisI GCNGC 7 cut(s) 111, 169, 220, 289, 453, 695, 700
BlnI CCTAGG 1 cut(s) 713
BlsI GCNGC 7 cut(s) 112, 170, 221, 290, 454, 696, 701
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 2 cut(s) 245, 710
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 3 cut(s) 245, 701, 710
BmiI GGNNCC 3 cut(s) 109, 223, 262
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 7 cut(s) 91, 180, 404, 482, 534, 681, 847
BmtI GCTAGC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 363
Bsa29I ATCGAT 2 cut(s) 9, 855
BsaHI GRCGYC 3 cut(s) 108, 204, 309
BsaI GGTCTC 1 cut(s) 723
BsaJI CCNNGG 1 cut(s) 713
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 245, 275
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 579
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 605
Bse3DI GCAATG 1 cut(s) 733
BseBI CCWGG 1 cut(s) 293
BseCI ATCGAT 2 cut(s) 9, 855
BseDI CCNNGG 1 cut(s) 713
BseGI GGATG 1 cut(s) 549
BseLI CCNNNNNNNGG 2 cut(s) 257, 579
BseMI GCAATG 1 cut(s) 733
BseMII CTCAG 4 cut(s) 68, 413, 553, 912
BseNI ACTGG 1 cut(s) 605
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 464
Bsh1236I CGCG 3 cut(s) 243, 288, 699
BshFI GGCC 3 cut(s) 291, 612, 702
BshNI GGYRCC 1 cut(s) 107
BshVI ATCGAT 2 cut(s) 9, 855
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 397
BslI CCNNNNNNNGG 2 cut(s) 257, 579
BsmAI GTCTC 1 cut(s) 723
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 3 cut(s) 291, 612, 702
Bso31I GGTCTC 1 cut(s) 723
BsoBI CYCGRG 1 cut(s) 158
Bsp143I GATC 1 cut(s) 78
BspANI GGCC 3 cut(s) 291, 612, 702
BspCNI CTCAG 4 cut(s) 67, 412, 552, 911
BspDI ATCGAT 2 cut(s) 9, 855
BspFNI CGCG 3 cut(s) 243, 288, 699
BspLI GGNNCC 3 cut(s) 109, 223, 262
BspOI GCTAGC 1 cut(s) 231
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 723
BsrDI GCAATG 1 cut(s) 733
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 605
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 713
BssMI GATC 1 cut(s) 78
BssNI GRCGYC 3 cut(s) 108, 204, 309
BssT1I CCWWGG 1 cut(s) 713
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 348
BstACI GRCGYC 3 cut(s) 108, 204, 309
BstC8I GCNNGC 6 cut(s) 88, 106, 229, 269, 610, 656
BstDEI CTNAG 4 cut(s) 54, 399, 539, 898
BstENI CCTNNNNNAGG 1 cut(s) 577
BstF5I GGATG 1 cut(s) 549
BstFNI CGCG 3 cut(s) 243, 288, 699
BstH2I RGCGCY 2 cut(s) 111, 378
BstHHI GCGC 4 cut(s) 110, 243, 377, 699
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 1 cut(s) 723
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 6 cut(s) 110, 201, 228, 247, 857, 908
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstUI CGCG 3 cut(s) 243, 288, 699
BstV1I GCAGC 1 cut(s) 464
Bsu15I ATCGAT 2 cut(s) 9, 855
BsuRI GGCC 3 cut(s) 291, 612, 702
BsuTUI ATCGAT 2 cut(s) 9, 855
BtgZI GCGATG 1 cut(s) 505
BtsCI GGATG 1 cut(s) 549
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 6 cut(s) 88, 106, 229, 269, 610, 656
CfoI GCGC 4 cut(s) 110, 243, 377, 699
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 3 cut(s) 245, 701, 710
ClaI ATCGAT 2 cut(s) 9, 855
CpoI CGGWCCG 1 cut(s) 245
CseI GACGC 3 cut(s) 193, 317, 444
Csp6I GTAC 1 cut(s) 43
CspCI CAANNNNNGTGG 4 cut(s) 643, 678, 715, 750
CspI CGGWCCG 1 cut(s) 245
CviAII CATG 4 cut(s) 61, 67, 638, 788
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 4 cut(s) 54, 399, 539, 898
DinI GGCGCC 1 cut(s) 109
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
EaeI YGGCCR 2 cut(s) 289, 610
EciI GGCGGA 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 713
Eco31I GGTCTC 1 cut(s) 723
Eco32I GATATC 1 cut(s) 793
Eco47I GGWCC 2 cut(s) 245, 710
Eco47III AGCGCT 1 cut(s) 376
Eco88I CYCGRG 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 291
EcoRV GATATC 1 cut(s) 793
EcoT14I CCWWGG 1 cut(s) 713
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 713
FaeI CATG 4 cut(s) 64, 70, 641, 791
FaiI YATR 7 cut(s) 62, 68, 153, 416, 516, 639, 789
FaqI GGGAC 1 cut(s) 397
FatI CATG 4 cut(s) 60, 66, 637, 787
FauI CCCGC 1 cut(s) 91
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 7 cut(s) 111, 169, 220, 289, 453, 695, 700
FokI GGATG 1 cut(s) 556
Fsp4HI GCNGC 7 cut(s) 111, 169, 220, 289, 453, 695, 700
FspBI CTAG 4 cut(s) 228, 372, 714, 919
GlaI GCGC 4 cut(s) 109, 242, 376, 698
GluI GCNGC 7 cut(s) 111, 169, 220, 289, 453, 695, 700
GsuI CTGGAG 1 cut(s) 247
HaeII RGCGCY 2 cut(s) 111, 378
HaeIII GGCC 3 cut(s) 291, 612, 702
HapII CCGG 1 cut(s) 105
HgaI GACGC 3 cut(s) 193, 317, 444
HhaI GCGC 4 cut(s) 110, 243, 377, 699
Hin1I GRCGYC 3 cut(s) 108, 204, 309
Hin1II CATG 4 cut(s) 64, 70, 641, 791
Hin6I GCGC 4 cut(s) 108, 241, 375, 697
HinP1I GCGC 4 cut(s) 108, 241, 375, 697
HincII GTYRAC 1 cut(s) 440
HindII GTYRAC 1 cut(s) 440
HinfI GANTC 6 cut(s) 11, 16, 116, 146, 403, 617
HpaII CCGG 1 cut(s) 105
HphI GGTGA 2 cut(s) 827, 902
Hpy166II GTNNAC 4 cut(s) 208, 440, 681, 818
Hpy188I TCNGA 5 cut(s) 199, 235, 402, 408, 586
Hpy188III TCNNGA 4 cut(s) 20, 56, 527, 541
Hpy8I GTNNAC 4 cut(s) 208, 440, 681, 818
Hpy99I CGWCG 7 cut(s) 95, 98, 101, 179, 182, 203, 260
HpyAV CCTTC 1 cut(s) 889
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4IV ACGT 2 cut(s) 189, 210
HpyCH4V TGCA 4 cut(s) 547, 654, 726, 860
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 201, 228, 247, 857, 908
HpyF3I CTNAG 4 cut(s) 54, 399, 539, 898
HpySE526I ACGT 2 cut(s) 189, 210
Hsp92I GRCGYC 3 cut(s) 108, 204, 309
Hsp92II CATG 4 cut(s) 64, 70, 641, 791
HspAI GCGC 4 cut(s) 108, 241, 375, 697
KasI GGCGCC 1 cut(s) 107
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 4 cut(s) 200, 227, 236, 266
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 7 cut(s) 91, 180, 404, 482, 534, 681, 847
MaeI CTAG 4 cut(s) 228, 372, 714, 919
MaeII ACGT 2 cut(s) 189, 210
MaeIII GTNAC 3 cut(s) 313, 596, 844
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 3 cut(s) 431, 561, 641
MlsI TGGCCA 1 cut(s) 612
MluCI AATT 5 cut(s) 236, 362, 462, 563, 801
MluNI TGGCCA 1 cut(s) 612
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 9 cut(s) 36, 39, 154, 178, 347, 402, 453, 583, 658
Mox20I TGGCCA 1 cut(s) 612
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 2 cut(s) 327, 670
MscI TGGCCA 1 cut(s) 612
MseI TTAA 2 cut(s) 461, 764
MslI CAYNNNNRTG 2 cut(s) 65, 686
Msp20I TGGCCA 1 cut(s) 612
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 3 cut(s) 243, 288, 699
MwoI GCNNNNNNNGC 6 cut(s) 110, 201, 228, 247, 857, 908
NaeI GCCGGC 1 cut(s) 106
NarI GGCGCC 1 cut(s) 108
NdeII GATC 1 cut(s) 78
NgoMIV GCCGGC 1 cut(s) 104
NheI GCTAGC 1 cut(s) 227
NlaIII CATG 4 cut(s) 64, 70, 641, 791
NlaIV GGNNCC 3 cut(s) 109, 223, 262
PaeR7I CTCGAG 1 cut(s) 158
PcsI WCGNNNNNNNCGW 4 cut(s) 171, 186, 195, 207
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 2 cut(s) 327, 670
PfeI GAWTC 5 cut(s) 11, 16, 146, 403, 617
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 7 cut(s) 112, 170, 221, 290, 454, 696, 701
PleI GAGTC 1 cut(s) 110
PluTI GGCGCC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 110
PshBI ATTAAT 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 3 cut(s) 109, 223, 262
PspPI GGNCC 3 cut(s) 245, 701, 710
PspXI VCTCGAGB 1 cut(s) 158
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 2 cut(s) 65, 686
Rsr2I CGGWCCG 1 cut(s) 245
RsrII CGGWCCG 1 cut(s) 245
SaqAI TTAA 2 cut(s) 461, 764
SatI GCNGC 7 cut(s) 111, 169, 220, 289, 453, 695, 700
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 3 cut(s) 245, 701, 710
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 293
SfaNI GCATC 7 cut(s) 91, 180, 404, 482, 534, 681, 847
SfoI GGCGCC 1 cut(s) 109
Sfr274I CTCGAG 1 cut(s) 158
SinI GGWCC 2 cut(s) 245, 710
SlaI CTCGAG 1 cut(s) 158
SmiMI CAYNNNNRTG 2 cut(s) 65, 686
SmlI CTYRAG 2 cut(s) 158, 378
SmoI CTYRAG 2 cut(s) 158, 378
Sse9I AATT 5 cut(s) 236, 362, 462, 563, 801
SspDI GGCGCC 1 cut(s) 107
SspMI CTAG 4 cut(s) 228, 372, 714, 919
StyD4I CCNGG 1 cut(s) 291
StyI CCWWGG 1 cut(s) 713
TaaI ACNGT 1 cut(s) 348
TaiI ACGT 2 cut(s) 192, 213
TaqI TCGA 5 cut(s) 9, 14, 123, 159, 855
TasI AATT 5 cut(s) 236, 362, 462, 563, 801
TauI GCSGC 6 cut(s) 113, 171, 222, 291, 697, 702
TfiI GAWTC 5 cut(s) 11, 16, 146, 403, 617
Tru1I TTAA 2 cut(s) 461, 764
Tru9I TTAA 2 cut(s) 461, 764
TscAI CASTG 1 cut(s) 342
TseI GCWGC 1 cut(s) 452
TspDTI ATGAA 1 cut(s) 375
TspGWI ACGGA 2 cut(s) 60, 401
TspRI CASTG 1 cut(s) 342
Tth111I GACNNNGTC 1 cut(s) 203
VpaK11BI GGWCC 2 cut(s) 245, 710
VspI ATTAAT 1 cut(s) 461
XagI CCTNNNNNAGG 1 cut(s) 577
XhoI CTCGAG 1 cut(s) 158
XmaJI CCTAGG 1 cut(s) 713
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 2 cut(s) 327, 670
XspI CTAG 4 cut(s) 228, 372, 714, 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.