Rh7BG415600

GATA transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
46848827 .. 46853890
5064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG415600.1

Sequence Viewer

Length: 900 bp
ATGTACGGACACGCCCACCCCATGGACATGCAAAACCAGATCCCCGCCGGCGGCGGCAACGACGACGACGCGCCGGGCCCGGAGTCCATCGACAACGCTCACATTCACTACGAAGGCCACACGCTCGAGGACGGCGGGGTCGTCGTCGAGGAGGCCACCTCCGATGACGTTTACATTCACGGCGGAAATACCGACCTCGACATGGCTATTCCTTACGAGGGCTCCAGTCAGCTCACGCTCTCGTTTCGTGGCCAAGTCTACGTCTTTGACTCCGTTACGCCTGATAAGGTTCAAGCTGTGCTATTGCTGTTGGGGGGCTCGGAATCATCTTCTGGTGCCCAAGGTGTAGACATGACAACTCAGAATCAGAGGGCCATAACAGAGTTTCCAACAGGCTGTAATCAGCCTCATAGAGCAGCGTCGTTAAATAGGTTTCGTCAAAAGAGGAAAGAACGATGCTTTGATAAGAAAGTCAGATATAGTGTCCGTCAAGAAGTTGCCCTCAGGATGCAGCGTAACAAGGGGCAATTTACTTCTTCCAAAAAGTCAGACGGAGATTACAGCTGGGGTTCTGGCCAAGAGTCAAGGCAAGATGACAGCAATGCAGAAACCTCATGCACACATTGTGGAACAAGTTCAAAGTGCACACCAATGATGCGGCGTGGTCCATCTGGTCCAAGGTCTCTTTGCAATGCTTGTGGGCTCTTCTGGGCAAACAGGGGGGTTTTGAGGGATATTTCCAAGAGACTGCCGGGTCATTCTCAGGCTGCTGGAGAACAGGTCTGTTTATATCTCTTCAGACATTTATCAGGGGATATATATTGTTGGTCACAATCAATTTTTTTTATTTCCGCACGTGTAATTGTCATTACCCATTTTCATGCATTGCAAACAGGGTGA

Protein Analysis

299

Amino Acids

32.9

Weight (kDa)

6.45

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 74 - 105 2e-13 tify domain
CCT PF06203 138 - 180 7.9e-16 CCT motif
Jas_motif PF09425 138 - 160 2.4e-06 Jas motif
GATA PF00320 206 - 242 3.4e-13 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 137, 753
AccB1I GGYRCC 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 22
AccI GTMKAC 2 cut(s) 258, 348
AccII CGCG 1 cut(s) 71
AciI CCGC 7 cut(s) 45, 51, 54, 135, 183, 658, 852
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 2 cut(s) 250, 574
AcuI CTGAAG 1 cut(s) 781
AcvI CACGTG 1 cut(s) 857
AdeI CACNNNGTG 1 cut(s) 626
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 4 cut(s) 22, 50, 202, 218
AflIII ACRYGT 1 cut(s) 856
AgsI TTSAA 2 cut(s) 293, 639
AluBI AGCT 3 cut(s) 232, 296, 564
AluI AGCT 3 cut(s) 232, 296, 564
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 2 cut(s) 687, 739
Alw44I GTGCAC 1 cut(s) 643
AlwI GGATC 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 6 cut(s) 76, 115, 153, 250, 372, 574
ApaI GGGCCC 1 cut(s) 80
ApaLI GTGCAC 1 cut(s) 643
ApeKI GCWGC 3 cut(s) 416, 511, 767
Asp700I GAANNNNTTC 1 cut(s) 634
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 5 cut(s) 76, 77, 372, 665, 674
AsuC2I CCSGG 3 cut(s) 75, 80, 753
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 2 cut(s) 665, 674
AxyI CCTNAGG 1 cut(s) 503
BaeGI GKGCMC 3 cut(s) 80, 340, 647
BalI TGGCCA 2 cut(s) 252, 576
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 4 cut(s) 80, 224, 320, 705
BbrPI CACGTG 1 cut(s) 857
Bbv12I GWGCWC 1 cut(s) 647
BbvI GCAGC 3 cut(s) 428, 523, 754
BccI CCATC 2 cut(s) 95, 676
BceAI ACGGC 2 cut(s) 148, 196
BcnI CCSGG 3 cut(s) 75, 80, 753
BcoDI GTCTC 2 cut(s) 687, 739
BisI GCNGC 6 cut(s) 52, 55, 417, 512, 659, 768
BlsI GCNGC 6 cut(s) 53, 56, 418, 513, 660, 769
Bme1390I CCNGG 3 cut(s) 75, 80, 753
Bme18I GGWCC 2 cut(s) 665, 674
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 5 cut(s) 76, 77, 372, 665, 674
BmiI GGNNCC 3 cut(s) 78, 223, 337
BmrFI CCNGG 3 cut(s) 75, 80, 753
BmsI GCATC 3 cut(s) 446, 498, 645
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BpmI CTGGAG 2 cut(s) 208, 792
BpuMI CCSGG 3 cut(s) 75, 80, 753
BsaAI YACGTR 1 cut(s) 857
BsaI GGTCTC 1 cut(s) 687
BsaJI CCNNGG 3 cut(s) 21, 340, 677
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 765, 795
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 50, 202, 218
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 225
Bse21I CCTNAGG 1 cut(s) 503
Bse3DI GCAATG 3 cut(s) 607, 697, 884
BseDI CCNNGG 3 cut(s) 21, 340, 677
BseGI GGATG 1 cut(s) 513
BseLI CCNNNNNNNGG 4 cut(s) 22, 50, 202, 218
BseMI GCAATG 3 cut(s) 607, 697, 884
BseMII CTCAG 3 cut(s) 374, 517, 776
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 164
BseSI GKGCMC 3 cut(s) 80, 340, 647
BseXI GCAGC 3 cut(s) 428, 523, 754
BseYI CCCAGC 1 cut(s) 564
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 6 cut(s) 78, 117, 155, 252, 374, 576
BshNI GGYRCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 647
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 4 cut(s) 48, 74, 80, 752
BslI CCNNNNNNNGG 4 cut(s) 22, 50, 202, 218
BsmAI GTCTC 2 cut(s) 687, 739
BsnI GGCC 6 cut(s) 78, 117, 155, 252, 374, 576
Bso31I GGTCTC 1 cut(s) 687
BsoBI CYCGRG 1 cut(s) 125
Bsp120I GGGCCC 1 cut(s) 76
Bsp1286I GDGCHC 6 cut(s) 80, 224, 320, 340, 647, 705
Bsp143I GATC 1 cut(s) 39
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 7 cut(s) 45, 51, 54, 135, 183, 658, 852
BspANI GGCC 6 cut(s) 78, 117, 155, 252, 374, 576
BspCNI CTCAG 3 cut(s) 373, 516, 775
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 3 cut(s) 78, 223, 337
BspPI GGATC 1 cut(s) 34
BspQI GCTCTTC 1 cut(s) 710
BspT107I GGYRCC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 687
BsrDI GCAATG 3 cut(s) 607, 697, 884
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 1 cut(s) 225
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 21, 340, 677
BssMI GATC 1 cut(s) 39
BssT1I CCWWGG 3 cut(s) 21, 340, 677
Bst6I CTCTTC 2 cut(s) 710, 800
BstBAI YACGTR 1 cut(s) 857
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 3 cut(s) 360, 503, 762
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 513
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 2 cut(s) 687, 739
BstMBI GATC 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 3 cut(s) 73, 78, 751
BstSLI GKGCMC 3 cut(s) 80, 340, 647
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 3 cut(s) 428, 523, 754
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 503
BsuRI GGCC 6 cut(s) 78, 117, 155, 252, 374, 576
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 513
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 5 cut(s) 76, 77, 372, 665, 674
CseI GACGC 2 cut(s) 77, 408
Csp6I GTAC 1 cut(s) 4
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviAII CATG 6 cut(s) 22, 28, 202, 352, 615, 881
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 3 cut(s) 360, 503, 762
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
DraIII CACNNNGTG 1 cut(s) 626
DrdI GACNNNNNNGTC 2 cut(s) 137, 753
DseDI GACNNNNNNGTC 2 cut(s) 137, 753
EaeI YGGCCR 2 cut(s) 250, 574
Eam1104I CTCTTC 2 cut(s) 710, 800
EarI CTCTTC 2 cut(s) 710, 800
EciI GGCGGA 1 cut(s) 198
Eco130I CCWWGG 3 cut(s) 21, 340, 677
Eco24I GRGCYC 4 cut(s) 80, 224, 320, 705
Eco31I GGTCTC 1 cut(s) 687
Eco47I GGWCC 2 cut(s) 665, 674
Eco57I CTGAAG 1 cut(s) 781
Eco72I CACGTG 1 cut(s) 857
Eco81I CCTNAGG 1 cut(s) 503
Eco88I CYCGRG 1 cut(s) 125
EcoT14I CCWWGG 3 cut(s) 21, 340, 677
EcoT22I ATGCAT 1 cut(s) 886
EcoT38I GRGCYC 4 cut(s) 80, 224, 320, 705
ErhI CCWWGG 3 cut(s) 21, 340, 677
FaeI CATG 6 cut(s) 25, 31, 205, 355, 618, 884
FatI CATG 6 cut(s) 21, 27, 201, 351, 614, 880
FauI CCCGC 2 cut(s) 52, 128
FblI GTMKAC 2 cut(s) 258, 348
Fnu4HI GCNGC 6 cut(s) 52, 55, 417, 512, 659, 768
FokI GGATG 1 cut(s) 520
FriOI GRGCYC 4 cut(s) 80, 224, 320, 705
Fsp4HI GCNGC 6 cut(s) 52, 55, 417, 512, 659, 768
GlaI GCGC 1 cut(s) 72
GluI GCNGC 6 cut(s) 52, 55, 417, 512, 659, 768
GsaI CCCAGC 1 cut(s) 568
GsuI CTGGAG 2 cut(s) 208, 792
HaeIII GGCC 6 cut(s) 78, 117, 155, 252, 374, 576
HapII CCGG 4 cut(s) 48, 74, 80, 752
HgaI GACGC 2 cut(s) 77, 408
HhaI GCGC 1 cut(s) 73
Hin1II CATG 6 cut(s) 25, 31, 205, 355, 618, 884
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 5 cut(s) 83, 269, 323, 364, 581
HpaII CCGG 4 cut(s) 48, 74, 80, 752
Hpy166II GTNNAC 4 cut(s) 172, 259, 349, 645
Hpy188I TCNGA 7 cut(s) 163, 322, 363, 369, 476, 550, 800
Hpy188III TCNNGA 2 cut(s) 491, 505
Hpy8I GTNNAC 4 cut(s) 172, 259, 349, 645
Hpy99I CGWCG 6 cut(s) 65, 68, 71, 146, 149, 424
HpyAV CCTTC 1 cut(s) 107
HpyCH4IV ACGT 3 cut(s) 168, 261, 856
HpyCH4V TGCA 8 cut(s) 31, 511, 605, 618, 645, 690, 884, 889
HpyF3I CTNAG 3 cut(s) 360, 503, 762
HpySE526I ACGT 3 cut(s) 168, 261, 856
Hsp92II CATG 6 cut(s) 25, 31, 205, 355, 618, 884
HspAI GCGC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 39
LguI GCTCTTC 1 cut(s) 710
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 3 cut(s) 428, 523, 754
LweI GCATC 3 cut(s) 446, 498, 645
MaeII ACGT 3 cut(s) 168, 261, 856
MaeIII GTNAC 3 cut(s) 274, 515, 828
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 4 cut(s) 321, 528, 697, 787
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 6 cut(s) 80, 224, 320, 340, 647, 705
MlsI TGGCCA 2 cut(s) 252, 576
MluCI AATT 3 cut(s) 527, 837, 861
MluNI TGGCCA 2 cut(s) 252, 576
MlyI GAGTC 3 cut(s) 92, 263, 590
MmeI TCCRAC 1 cut(s) 413
Mox20I TGGCCA 2 cut(s) 252, 576
Mph1103I ATGCAT 1 cut(s) 886
MreI CGCCGGCG 1 cut(s) 47
MroNI GCCGGC 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 634
MscI TGGCCA 2 cut(s) 252, 576
MseI TTAA 1 cut(s) 425
MslI CAYNNNNRTG 3 cut(s) 26, 650, 879
Msp20I TGGCCA 2 cut(s) 252, 576
MspA1I CMGCKG 1 cut(s) 564
MspI CCGG 4 cut(s) 48, 74, 80, 752
MspR9I CCNGG 3 cut(s) 75, 80, 753
MvnI CGCG 1 cut(s) 71
NaeI GCCGGC 1 cut(s) 49
NciI CCSGG 3 cut(s) 75, 80, 753
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 39
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 6 cut(s) 25, 31, 205, 355, 618, 884
NlaIV GGNNCC 3 cut(s) 78, 223, 337
NmuCI GTSAC 1 cut(s) 828
NsiI ATGCAT 1 cut(s) 886
NspI RCATGY 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 125
PciSI GCTCTTC 1 cut(s) 710
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 634
PfeI GAWTC 2 cut(s) 323, 364
PflMI CCANNNNNTGG 1 cut(s) 22
PkrI GCNGC 6 cut(s) 53, 56, 418, 513, 660, 769
PleI GAGTC 3 cut(s) 91, 263, 589
PmaCI CACGTG 1 cut(s) 857
PmlI CACGTG 1 cut(s) 857
PpsI GAGTC 3 cut(s) 91, 263, 589
Ppu21I YACGTR 1 cut(s) 857
PspCI CACGTG 1 cut(s) 857
PspFI CCCAGC 1 cut(s) 564
PspN4I GGNNCC 3 cut(s) 78, 223, 337
PspOMI GGGCCC 1 cut(s) 76
PspPI GGNCC 5 cut(s) 76, 77, 372, 665, 674
PspXI VCTCGAGB 1 cut(s) 125
PsuI RGATCY 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 564
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 3 cut(s) 26, 650, 879
SapI GCTCTTC 1 cut(s) 710
SaqAI TTAA 1 cut(s) 425
SatI GCNGC 6 cut(s) 52, 55, 417, 512, 659, 768
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 5 cut(s) 76, 77, 372, 665, 674
SchI GAGTC 3 cut(s) 92, 263, 590
ScrFI CCNGG 3 cut(s) 75, 80, 753
SduI GDGCHC 6 cut(s) 80, 224, 320, 340, 647, 705
SfaNI GCATC 3 cut(s) 446, 498, 645
Sfr274I CTCGAG 1 cut(s) 125
SgrAI CRCCGGYG 1 cut(s) 47
SinI GGWCC 2 cut(s) 665, 674
SlaI CTCGAG 1 cut(s) 125
SmiMI CAYNNNNRTG 3 cut(s) 26, 650, 879
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 3 cut(s) 527, 837, 861
SsiI CCGC 7 cut(s) 45, 51, 54, 135, 183, 658, 852
StyD4I CCNGG 3 cut(s) 73, 78, 751
StyI CCWWGG 3 cut(s) 21, 340, 677
TaiI ACGT 3 cut(s) 171, 264, 859
TaqI TCGA 4 cut(s) 90, 126, 147, 198
TasI AATT 3 cut(s) 527, 837, 861
TauI GCSGC 3 cut(s) 54, 57, 661
TfiI GAWTC 2 cut(s) 323, 364
Tru1I TTAA 1 cut(s) 425
Tru9I TTAA 1 cut(s) 425
TseFI GTSAC 1 cut(s) 828
TseI GCWGC 3 cut(s) 416, 511, 767
Tsp45I GTSAC 1 cut(s) 828
TspDTI ATGAA 1 cut(s) 869
TspGWI ACGGA 4 cut(s) 21, 262, 476, 567
Van91I CCANNNNNTGG 1 cut(s) 22
VneI GTGCAC 1 cut(s) 643
VpaK11BI GGWCC 2 cut(s) 665, 674
XceI RCATGY 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 125
XmiI GTMKAC 2 cut(s) 258, 348
XmnI GAANNNNTTC 1 cut(s) 634
Zsp2I ATGCAT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.