Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002239.1

Orthogroup ID

OG0009114

Physical Location & Seq

Genomic Coordinates Reverse (-)

81824 .. 85827

Gene Structure 4004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002239.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atggacatgcaaaaccagatccccgccggcggcggcaacgacgacgatgcgccgggcccggagtccatcgacaacgcccacattcactacgaaggccacacgctcgaggacggcggggtcgtcgtcgaggaggccacctccgatgacgtttacattcacggcggaaataccgacctcgacatggctattccttacgagggctccagtcagctcacgctctcgtttcgtggccaagtctacgtctttgactccgttacgcctgataaggttcaagctgtgctattgctgttggggggctccgaatcatcttctggtgcccaaggtgtagacatgacaactcagaatcagagggccataacagagtttccaacaggctgtaatcagcctcatagagcagcgtcgttaaacaggtttcgtcaaaagaggaaagaacgatgctttgataagaaagtcagatatagtgtccgtcaagaagttgccctcaggatgcagcgtaacaaggggcaatttacttcttccaaaaagtcagacggagattacagctggggttctggccaagagtcaaggcaagatgacagcaatgcagaaacctcatgcacacattgtggaacaagttcaaagtgcacaccaatgatgcggcgtggtccatctggtccaaggtctctttgcaatgcttgtgggctcttctgggcaaacaggggggttttgagggatatttccaagagaccgccgggtcattctctgactgctggagaacagggtgaggctgaagctgatgactcagacactggaacggccatcgttgtacacaatgctgcagacgctgttcccttatctaatggtgataacaaggctttagttgctgaaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

290

Amino Acids

31.2

Weight (kDa)

5.19

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24470 AT4G24470 AT4G24470
fragaria_vesca	FvH4_5g34500 FvH4_5g34500
malus_domestica	MD08G1200800.v1.1 MD15G1387700.v1.1
prunus_persica	Prupe.1G534300_v2.0.a1
pyrus_communis	pycom08g17440 pycom15g34800
rosa_chinensis	RchiOBHm_Chr7g0235141
rosa_laevigata	RLG00000001179
rosa_multiflora	Rmu_sc0002239.1_g000022 Rmu_sc0007762.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226250
rosa_rugosa	Rorug07G0288200.1 Rorug07G0288300
rosa_samantha	Rh7AG442900 Rh7BG415600 Rh7CG463800 Rh7DG432600
rosa_wichuraiana	Rw7G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	116, 732
AccB1I	GGYRCC	1 cut(s)	314
AccI	GTMKAC	2 cut(s)	237, 327
AciI	CCGC	7 cut(s)	24, 30, 33, 114, 162, 637, 728
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	3 cut(s)	229, 553, 795
AcuI	CTGAAG	1 cut(s)	789
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	1 cut(s)	807
AfiI	CCNNNNNNNGG	3 cut(s)	29, 181, 197
AgsI	TTSAA	2 cut(s)	272, 618
AluBI	AGCT	4 cut(s)	211, 275, 543, 773
AluI	AGCT	4 cut(s)	211, 275, 543, 773
Alw21I	GWGCWC	1 cut(s)	626
Alw26I	GTCTC	2 cut(s)	666, 718
Alw44I	GTGCAC	1 cut(s)	622
AlwI	GGATC	1 cut(s)	13
AlwNI	CAGNNNCTG	2 cut(s)	788, 824
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	7 cut(s)	55, 94, 132, 229, 351, 553, 795
ApaI	GGGCCC	1 cut(s)	59
ApaLI	GTGCAC	1 cut(s)	622
ApeKI	GCWGC	3 cut(s)	395, 490, 815
Asp700I	GAANNNNTTC	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	5 cut(s)	55, 56, 351, 644, 653
AsuC2I	CCSGG	3 cut(s)	54, 59, 732
AsuHPI	GGTGA	2 cut(s)	773, 854
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	2 cut(s)	644, 653
AxyI	CCTNAGG	1 cut(s)	482
BaeGI	GKGCMC	3 cut(s)	59, 319, 626
BalI	TGGCCA	2 cut(s)	231, 555
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	4 cut(s)	59, 203, 299, 684
Bbv12I	GWGCWC	1 cut(s)	626
BbvI	GCAGC	3 cut(s)	407, 502, 802
BccI	CCATC	3 cut(s)	74, 655, 806
BceAI	ACGGC	3 cut(s)	127, 175, 810
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BcnI	CCSGG	3 cut(s)	54, 59, 732
BcoDI	GTCTC	2 cut(s)	666, 718
BfmI	CTRYAG	1 cut(s)	816
BisI	GCNGC	6 cut(s)	31, 34, 396, 491, 638, 816
BlsI	GCNGC	6 cut(s)	32, 35, 397, 492, 639, 817
Bme1390I	CCNGG	3 cut(s)	54, 59, 732
Bme18I	GGWCC	2 cut(s)	644, 653
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	5 cut(s)	55, 56, 351, 644, 653
BmiI	GGNNCC	4 cut(s)	57, 202, 298, 316
BmrFI	CCNGG	3 cut(s)	54, 59, 732
BmsI	GCATC	4 cut(s)	37, 425, 477, 624
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	2 cut(s)	187, 771
BpuMI	CCSGG	3 cut(s)	54, 59, 732
BsaI	GGTCTC	2 cut(s)	666, 718
BsaJI	CCNNGG	2 cut(s)	319, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 181, 197
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	204, 793
Bse21I	CCTNAGG	1 cut(s)	482
Bse3DI	GCAATG	2 cut(s)	586, 676
BseDI	CCNNGG	2 cut(s)	319, 656
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	3 cut(s)	29, 181, 197
BseMI	GCAATG	2 cut(s)	586, 676
BseMII	CTCAG	3 cut(s)	353, 496, 795
BseNI	ACTGG	2 cut(s)	204, 793
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	3 cut(s)	59, 319, 626
BseXI	GCAGC	3 cut(s)	407, 502, 802
BseYI	CCCAGC	1 cut(s)	543
BshFI	GGCC	7 cut(s)	57, 96, 134, 231, 353, 555, 797
BshNI	GGYRCC	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	626
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	4 cut(s)	27, 53, 59, 731
BslI	CCNNNNNNNGG	3 cut(s)	29, 181, 197
BsmAI	GTCTC	2 cut(s)	666, 718
BsnI	GGCC	7 cut(s)	57, 96, 134, 231, 353, 555, 797
Bso31I	GGTCTC	2 cut(s)	666, 718
BsoBI	CYCGRG	1 cut(s)	104
Bsp120I	GGGCCC	1 cut(s)	55
Bsp1286I	GDGCHC	6 cut(s)	59, 203, 299, 319, 626, 684
Bsp1407I	TGTACA	1 cut(s)	805
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	7 cut(s)	24, 30, 33, 114, 162, 637, 728
BspANI	GGCC	7 cut(s)	57, 96, 134, 231, 353, 555, 797
BspCNI	CTCAG	3 cut(s)	352, 495, 794
BspLI	GGNNCC	4 cut(s)	57, 202, 298, 316
BspMAI	CTGCAG	1 cut(s)	820
BspPI	GGATC	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	689
BspT107I	GGYRCC	1 cut(s)	314
BspTNI	GGTCTC	2 cut(s)	666, 718
BsrDI	GCAATG	2 cut(s)	586, 676
BsrFI	RCCGGY	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	2 cut(s)	204, 793
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	319, 656
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	319, 656
Bst6I	CTCTTC	1 cut(s)	689
BstAUI	TGTACA	1 cut(s)	805
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	4 cut(s)	339, 482, 781, 870
BstF5I	GGATG	1 cut(s)	492
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	2 cut(s)	666, 718
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	821, 860
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	3 cut(s)	52, 57, 730
BstSFI	CTRYAG	1 cut(s)	816
BstSLI	GKGCMC	3 cut(s)	59, 319, 626
BstV1I	GCAGC	3 cut(s)	407, 502, 802
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
Bsu36I	CCTNAGG	1 cut(s)	482
BsuRI	GGCC	7 cut(s)	57, 96, 134, 231, 353, 555, 797
BtsCI	GGATG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	786
Cac8I	GCNNGC	1 cut(s)	28
CaiI	CAGNNNCTG	2 cut(s)	788, 824
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	5 cut(s)	55, 56, 351, 644, 653
CseI	GACGC	2 cut(s)	387, 830
Csp6I	GTAC	1 cut(s)	806
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviAII	CATG	4 cut(s)	7, 181, 331, 594
CviQI	GTAC	1 cut(s)	806
DdeI	CTNAG	4 cut(s)	339, 482, 781, 870
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
DraIII	CACNNNGTG	1 cut(s)	605
DrdI	GACNNNNNNGTC	2 cut(s)	116, 732
DseDI	GACNNNNNNGTC	2 cut(s)	116, 732
EaeI	YGGCCR	3 cut(s)	229, 553, 795
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
EciI	GGCGGA	1 cut(s)	177
Eco130I	CCWWGG	2 cut(s)	319, 656
Eco24I	GRGCYC	4 cut(s)	59, 203, 299, 684
Eco31I	GGTCTC	2 cut(s)	666, 718
Eco47I	GGWCC	2 cut(s)	644, 653
Eco57I	CTGAAG	1 cut(s)	789
Eco81I	CCTNAGG	1 cut(s)	482
Eco88I	CYCGRG	1 cut(s)	104
EcoT14I	CCWWGG	2 cut(s)	319, 656
EcoT38I	GRGCYC	4 cut(s)	59, 203, 299, 684
ErhI	CCWWGG	2 cut(s)	319, 656
FaeI	CATG	4 cut(s)	10, 184, 334, 597
FaiI	YATR	7 cut(s)	8, 182, 332, 356, 390, 459, 595
FatI	CATG	4 cut(s)	6, 180, 330, 593
FauI	CCCGC	2 cut(s)	31, 107
FblI	GTMKAC	2 cut(s)	237, 327
Fnu4HI	GCNGC	6 cut(s)	31, 34, 396, 491, 638, 816
FokI	GGATG	1 cut(s)	499
FriOI	GRGCYC	4 cut(s)	59, 203, 299, 684
Fsp4HI	GCNGC	6 cut(s)	31, 34, 396, 491, 638, 816
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	6 cut(s)	31, 34, 396, 491, 638, 816
GsaI	CCCAGC	1 cut(s)	547
GsuI	CTGGAG	2 cut(s)	187, 771
HaeIII	GGCC	7 cut(s)	57, 96, 134, 231, 353, 555, 797
HapII	CCGG	4 cut(s)	27, 53, 59, 731
HgaI	GACGC	2 cut(s)	387, 830
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	10, 184, 334, 597
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	6 cut(s)	62, 248, 302, 343, 560, 779
HpaII	CCGG	4 cut(s)	27, 53, 59, 731
HphI	GGTGA	2 cut(s)	773, 854
Hpy166II	GTNNAC	5 cut(s)	151, 238, 328, 624, 808
Hpy188I	TCNGA	8 cut(s)	142, 301, 342, 348, 455, 529, 744, 784
Hpy188III	TCNNGA	2 cut(s)	470, 484
Hpy8I	GTNNAC	5 cut(s)	151, 238, 328, 624, 808
Hpy99I	CGWCG	5 cut(s)	44, 47, 125, 128, 403
HpyAV	CCTTC	1 cut(s)	86
HpyCH4IV	ACGT	2 cut(s)	147, 240
HpyCH4V	TGCA	7 cut(s)	10, 490, 584, 597, 624, 669, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	821, 860
HpyF3I	CTNAG	4 cut(s)	339, 482, 781, 870
HpySE526I	ACGT	2 cut(s)	147, 240
Hsp92II	CATG	4 cut(s)	10, 184, 334, 597
HspAI	GCGC	1 cut(s)	50
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	18
LguI	GCTCTTC	1 cut(s)	689
LmnI	GCTCC	2 cut(s)	206, 302
Lsp1109I	GCAGC	3 cut(s)	407, 502, 802
LweI	GCATC	4 cut(s)	37, 425, 477, 624
MaeII	ACGT	2 cut(s)	147, 240
MaeIII	GTNAC	2 cut(s)	253, 494
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	3 cut(s)	300, 507, 676
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	6 cut(s)	59, 203, 299, 319, 626, 684
MlsI	TGGCCA	2 cut(s)	231, 555
MluCI	AATT	1 cut(s)	506
MluNI	TGGCCA	2 cut(s)	231, 555
MlyI	GAGTC	4 cut(s)	71, 242, 569, 773
MmeI	TCCRAC	1 cut(s)	392
Mox20I	TGGCCA	2 cut(s)	231, 555
MreI	CGCCGGCG	1 cut(s)	26
MroNI	GCCGGC	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	613
MscI	TGGCCA	2 cut(s)	231, 555
MseI	TTAA	1 cut(s)	404
MslI	CAYNNNNRTG	1 cut(s)	629
Msp20I	TGGCCA	2 cut(s)	231, 555
MspA1I	CMGCKG	1 cut(s)	543
MspI	CCGG	4 cut(s)	27, 53, 59, 731
MspR9I	CCNGG	3 cut(s)	54, 59, 732
MwoI	GCNNNNNNNGC	2 cut(s)	821, 860
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	3 cut(s)	54, 59, 732
NdeII	GATC	1 cut(s)	18
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	4 cut(s)	10, 184, 334, 597
NlaIV	GGNNCC	4 cut(s)	57, 202, 298, 316
NspI	RCATGY	1 cut(s)	10
PaeR7I	CTCGAG	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	689
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdiI	GCCGGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	613
PfeI	GAWTC	2 cut(s)	302, 343
PkrI	GCNGC	6 cut(s)	32, 35, 397, 492, 639, 817
PleI	GAGTC	4 cut(s)	70, 242, 568, 773
PpsI	GAGTC	4 cut(s)	70, 242, 568, 773
PspFI	CCCAGC	1 cut(s)	543
PspN4I	GGNNCC	4 cut(s)	57, 202, 298, 316
PspOMI	GGGCCC	1 cut(s)	55
PspPI	GGNCC	5 cut(s)	55, 56, 351, 644, 653
PspXI	VCTCGAGB	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	820
PstNI	CAGNNNCTG	2 cut(s)	788, 824
PsuI	RGATCY	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	543
RsaI	GTAC	1 cut(s)	807
RsaNI	GTAC	1 cut(s)	806
RseI	CAYNNNNRTG	1 cut(s)	629
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	6 cut(s)	31, 34, 396, 491, 638, 816
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	5 cut(s)	55, 56, 351, 644, 653
SchI	GAGTC	4 cut(s)	71, 242, 569, 773
ScrFI	CCNGG	3 cut(s)	54, 59, 732
SduI	GDGCHC	6 cut(s)	59, 203, 299, 319, 626, 684
SfaNI	GCATC	4 cut(s)	37, 425, 477, 624
SfcI	CTRYAG	1 cut(s)	816
Sfr274I	CTCGAG	1 cut(s)	104
SgrAI	CRCCGGYG	1 cut(s)	26
SinI	GGWCC	2 cut(s)	644, 653
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	506
SsiI	CCGC	7 cut(s)	24, 30, 33, 114, 162, 637, 728
StyD4I	CCNGG	3 cut(s)	52, 57, 730
StyI	CCWWGG	2 cut(s)	319, 656
TaiI	ACGT	2 cut(s)	150, 243
TaqI	TCGA	4 cut(s)	69, 105, 126, 177
TasI	AATT	1 cut(s)	506
TatI	WGTACW	1 cut(s)	805
TauI	GCSGC	3 cut(s)	33, 36, 640
TfiI	GAWTC	2 cut(s)	302, 343
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	1 cut(s)	793
TseI	GCWGC	3 cut(s)	395, 490, 815
TspGWI	ACGGA	3 cut(s)	241, 455, 546
TspRI	CASTG	1 cut(s)	793
VneI	GTGCAC	1 cut(s)	622
VpaK11BI	GGWCC	2 cut(s)	644, 653
XceI	RCATGY	1 cut(s)	10
XhoI	CTCGAG	1 cut(s)	104
XmiI	GTMKAC	2 cut(s)	237, 327
XmnI	GAANNNNTTC	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.