Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009114

Physical Location & Seq

Genomic Coordinates Forward (+)

34591641 .. 34594816

Gene Structure 3176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGACCATCGATTCGATTCGTGAGCCTCCTCCAATTTCAATGTACGGACACTCTCAGGACATGACCATGCCAAACCCGATCCCCGCCTGCGACGACGACGATGCCGGCGCCGCAGACTCCATCGACAACGCCCACATTCAATACGATTCCCATACGCTCGAGGACGGCGGCATCGTCGTCGTTGAGGACGTTAGCTCCGACGGCGTCTACGTTCAAGGCGGCTCCGCTAGCTCCGAATTGCGCGGTCCGCCTTACGACGGCTCCAGCCAGCTCACGCTGTCGTTTCGCGGCCAGGTCTTTGTTTTTGACGCCGTTACGCCTGAAAAGGTTCAAGCAGTGTTATTACTGTTGGGGGGTAATGAATTATCTCCTAACGCTCAAGGGACGGAGTTGGCATCTCAGAATCAGAGGGCTACGGAAGATTATCCCCGATGTAGTCAACCTCACAGAGCAGCATCATTATTTAGGTTTCGTCAAAAGAGAAAAGAGCGATGCTTTGACAAAAAAGTGAGATATGGTGTTCGTCAAGAAGTAGCACTCAGGATGCAACGAAACAAGGGCCAATTTTCTTCTTCCAAAAGGTCAGATGGAGATAGTAACTGGTCTGCTGGCCAGGAGTCAGGGCAGGAAGATTGCCATGCCGAAACCTCCTGCAAGCATTGTGGAATAAGTTCAAAGTCCACACCAATGATGCGGCGCGGCCCATCTGGTCCAAGGTCTCTTTGCAATGCTTGTGGGCTTTTTTGGGCAAACAGGGGGGGTTTAAGGGAACTTTCCAAGAGAAGCCATGATATCAAACGAATTGAACAGGGTGGTGAACCTGATACTAAAGATTTGGACAGCGTAACTGCCATCGATGCACACGACAATCTTGTTCCCTTCTCTAATGGTGATAACTCGGCTTTAGTTGCCGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

307

Amino Acids

33.35

Weight (kDa)

5.42

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24470 AT4G24470 AT4G24470
fragaria_vesca	FvH4_5g34500 FvH4_5g34500
malus_domestica	MD08G1200800.v1.1 MD15G1387700.v1.1
prunus_persica	Prupe.1G534300_v2.0.a1
pyrus_communis	pycom08g17440 pycom15g34800
rosa_chinensis	RchiOBHm_Chr7g0235141
rosa_laevigata	RLG00000001179
rosa_multiflora	Rmu_sc0002239.1_g000022 Rmu_sc0007762.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226250
rosa_rugosa	Rorug07G0288200.1 Rorug07G0288300
rosa_samantha	Rh7AG442900 Rh7BG415600 Rh7CG463800 Rh7DG432600
rosa_wichuraiana	Rw7G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	3 cut(s)	243, 288, 699
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	2 cut(s)	289, 610
AcyI	GRCGYC	3 cut(s)	108, 204, 309
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	6 cut(s)	39, 140, 215, 332, 675, 806
AjnI	CCWGG	2 cut(s)	291, 612
AluBI	AGCT	3 cut(s)	195, 231, 271
AluI	AGCT	3 cut(s)	195, 231, 271
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	4 cut(s)	289, 559, 610, 700
ApeKI	GCWGC	1 cut(s)	452
ArsI	GACNNNNNNTTYG	1 cut(s)	27
Asp700I	GAANNNNTTC	2 cut(s)	327, 670
AspLEI	GCGC	3 cut(s)	110, 243, 699
AspS9I	GGNCC	4 cut(s)	245, 559, 701, 710
AsuHPI	GGTGA	2 cut(s)	827, 902
AsuNHI	GCTAGC	1 cut(s)	227
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	2 cut(s)	245, 710
BalI	TGGCCA	1 cut(s)	612
BanI	GGYRCC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	464
BccI	CCATC	5 cut(s)	14, 128, 581, 712, 860
BceAI	ACGGC	4 cut(s)	181, 217, 274, 296
BcgI	CGANNNNNNTGC	4 cut(s)	83, 117, 160, 194
BciT130I	CCWGG	2 cut(s)	293, 614
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	2 cut(s)	228, 919
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	7 cut(s)	111, 169, 220, 289, 453, 695, 700
BlsI	GCNGC	7 cut(s)	112, 170, 221, 290, 454, 696, 701
Bme1390I	CCNGG	2 cut(s)	293, 614
Bme18I	GGWCC	2 cut(s)	245, 710
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	4 cut(s)	245, 559, 701, 710
BmiI	GGNNCC	3 cut(s)	109, 223, 262
BmrFI	CCNGG	2 cut(s)	293, 614
BmsI	GCATC	8 cut(s)	91, 180, 404, 464, 482, 534, 681, 847
BmtI	GCTAGC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	247
BpuEI	CTTGAG	1 cut(s)	363
Bsa29I	ATCGAT	2 cut(s)	9, 855
BsaHI	GRCGYC	3 cut(s)	108, 204, 309
BsaI	GGTCTC	1 cut(s)	723
BsaJI	CCNNGG	1 cut(s)	713
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	733
BseBI	CCWGG	2 cut(s)	293, 614
BseCI	ATCGAT	2 cut(s)	9, 855
BseDI	CCNNGG	1 cut(s)	713
BseGI	GGATG	1 cut(s)	549
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	3 cut(s)	68, 413, 553
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	464
Bsh1236I	CGCG	3 cut(s)	243, 288, 699
BshFI	GGCC	4 cut(s)	291, 561, 612, 702
BshNI	GGYRCC	1 cut(s)	107
BshVI	ATCGAT	2 cut(s)	9, 855
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	4 cut(s)	291, 561, 612, 702
Bso31I	GGTCTC	1 cut(s)	723
BsoBI	CYCGRG	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	78
BspANI	GGCC	4 cut(s)	291, 561, 612, 702
BspCNI	CTCAG	3 cut(s)	67, 412, 552
BspDI	ATCGAT	2 cut(s)	9, 855
BspFNI	CGCG	3 cut(s)	243, 288, 699
BspLI	GGNNCC	3 cut(s)	109, 223, 262
BspOI	GCTAGC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	723
BsrDI	GCAATG	1 cut(s)	733
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	605
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	713
BssMI	GATC	1 cut(s)	78
BssNI	GRCGYC	3 cut(s)	108, 204, 309
BssT1I	CCWWGG	1 cut(s)	713
Bst2UI	CCWGG	2 cut(s)	293, 614
Bst4CI	ACNGT	1 cut(s)	348
BstACI	GRCGYC	3 cut(s)	108, 204, 309
BstC8I	GCNNGC	6 cut(s)	88, 106, 229, 269, 610, 656
BstDEI	CTNAG	3 cut(s)	54, 399, 539
BstF5I	GGATG	1 cut(s)	549
BstFNI	CGCG	3 cut(s)	243, 288, 699
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	3 cut(s)	110, 243, 699
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 201, 228, 247, 857, 908
BstNI	CCWGG	2 cut(s)	293, 614
BstSCI	CCNGG	2 cut(s)	291, 612
BstUI	CGCG	3 cut(s)	243, 288, 699
BstV1I	GCAGC	1 cut(s)	464
Bsu15I	ATCGAT	2 cut(s)	9, 855
BsuRI	GGCC	4 cut(s)	291, 561, 612, 702
BsuTUI	ATCGAT	2 cut(s)	9, 855
BtgZI	GCGATG	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	549
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	6 cut(s)	88, 106, 229, 269, 610, 656
CfoI	GCGC	3 cut(s)	110, 243, 699
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	4 cut(s)	245, 559, 701, 710
ClaI	ATCGAT	2 cut(s)	9, 855
CpoI	CGGWCCG	1 cut(s)	245
CseI	GACGC	2 cut(s)	193, 317
Csp6I	GTAC	1 cut(s)	43
CspCI	CAANNNNNGTGG	4 cut(s)	643, 678, 715, 750
CspI	CGGWCCG	1 cut(s)	245
CviAII	CATG	4 cut(s)	61, 67, 638, 788
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	3 cut(s)	54, 399, 539
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
EaeI	YGGCCR	2 cut(s)	289, 610
EciI	GGCGGA	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	713
Eco31I	GGTCTC	1 cut(s)	723
Eco32I	GATATC	1 cut(s)	793
Eco47I	GGWCC	2 cut(s)	245, 710
Eco88I	CYCGRG	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	291, 612
EcoRV	GATATC	1 cut(s)	793
EcoT14I	CCWWGG	1 cut(s)	713
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	713
FaeI	CATG	4 cut(s)	64, 70, 641, 791
FaiI	YATR	6 cut(s)	62, 68, 153, 516, 639, 789
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	4 cut(s)	60, 66, 637, 787
FauI	CCCGC	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	7 cut(s)	111, 169, 220, 289, 453, 695, 700
FokI	GGATG	1 cut(s)	556
Fsp4HI	GCNGC	7 cut(s)	111, 169, 220, 289, 453, 695, 700
FspBI	CTAG	2 cut(s)	228, 919
GlaI	GCGC	3 cut(s)	109, 242, 698
GluI	GCNGC	7 cut(s)	111, 169, 220, 289, 453, 695, 700
GsuI	CTGGAG	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	4 cut(s)	291, 561, 612, 702
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	2 cut(s)	193, 317
HhaI	GCGC	3 cut(s)	110, 243, 699
Hin1I	GRCGYC	3 cut(s)	108, 204, 309
Hin1II	CATG	4 cut(s)	64, 70, 641, 791
Hin6I	GCGC	3 cut(s)	108, 241, 697
HinP1I	GCGC	3 cut(s)	108, 241, 697
HincII	GTYRAC	1 cut(s)	440
HindII	GTYRAC	1 cut(s)	440
HinfI	GANTC	6 cut(s)	11, 16, 116, 146, 403, 617
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	2 cut(s)	827, 902
Hpy166II	GTNNAC	4 cut(s)	208, 440, 681, 818
Hpy188I	TCNGA	5 cut(s)	199, 235, 402, 408, 586
Hpy188III	TCNNGA	4 cut(s)	20, 56, 527, 541
Hpy8I	GTNNAC	4 cut(s)	208, 440, 681, 818
Hpy99I	CGWCG	7 cut(s)	95, 98, 101, 179, 182, 203, 260
HpyAV	CCTTC	1 cut(s)	889
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	2 cut(s)	189, 210
HpyCH4V	TGCA	4 cut(s)	547, 654, 726, 860
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 201, 228, 247, 857, 908
HpyF3I	CTNAG	3 cut(s)	54, 399, 539
HpySE526I	ACGT	2 cut(s)	189, 210
Hsp92I	GRCGYC	3 cut(s)	108, 204, 309
Hsp92II	CATG	4 cut(s)	64, 70, 641, 791
HspAI	GCGC	3 cut(s)	108, 241, 697
KasI	GGCGCC	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	4 cut(s)	200, 227, 236, 266
Lsp1109I	GCAGC	1 cut(s)	464
LweI	GCATC	8 cut(s)	91, 180, 404, 464, 482, 534, 681, 847
MaeI	CTAG	2 cut(s)	228, 919
MaeII	ACGT	2 cut(s)	189, 210
MaeIII	GTNAC	3 cut(s)	313, 596, 844
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	4 cut(s)	431, 561, 564, 641
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	5 cut(s)	33, 236, 362, 563, 801
MluNI	TGGCCA	1 cut(s)	612
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	2 cut(s)	110, 626
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	7 cut(s)	36, 39, 154, 178, 402, 453, 658
Mox20I	TGGCCA	1 cut(s)	612
MroNI	GCCGGC	1 cut(s)	104
MroXI	GAANNNNTTC	2 cut(s)	327, 670
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	1 cut(s)	764
MslI	CAYNNNNRTG	2 cut(s)	65, 686
Msp20I	TGGCCA	1 cut(s)	612
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	293, 614
MvaI	CCWGG	2 cut(s)	293, 614
MvnI	CGCG	3 cut(s)	243, 288, 699
MwoI	GCNNNNNNNGC	6 cut(s)	110, 201, 228, 247, 857, 908
NaeI	GCCGGC	1 cut(s)	106
NarI	GGCGCC	1 cut(s)	108
NdeII	GATC	1 cut(s)	78
NgoMIV	GCCGGC	1 cut(s)	104
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	4 cut(s)	64, 70, 641, 791
NlaIV	GGNNCC	3 cut(s)	109, 223, 262
NmeAIII	GCCGAG	1 cut(s)	878
PaeR7I	CTCGAG	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	5 cut(s)	171, 186, 195, 207, 861
PdiI	GCCGGC	1 cut(s)	106
PdmI	GAANNNNTTC	2 cut(s)	327, 670
PfeI	GAWTC	4 cut(s)	11, 16, 146, 403
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	7 cut(s)	112, 170, 221, 290, 454, 696, 701
PleI	GAGTC	2 cut(s)	110, 625
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	2 cut(s)	110, 625
Psp6I	CCWGG	2 cut(s)	291, 612
PspGI	CCWGG	2 cut(s)	291, 612
PspN4I	GGNNCC	3 cut(s)	109, 223, 262
PspPI	GGNCC	4 cut(s)	245, 559, 701, 710
PspXI	VCTCGAGB	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	2 cut(s)	65, 686
Rsr2I	CGGWCCG	1 cut(s)	245
RsrII	CGGWCCG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	764
SatI	GCNGC	7 cut(s)	111, 169, 220, 289, 453, 695, 700
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	4 cut(s)	245, 559, 701, 710
SchI	GAGTC	2 cut(s)	110, 626
ScrFI	CCNGG	2 cut(s)	293, 614
SfaNI	GCATC	8 cut(s)	91, 180, 404, 464, 482, 534, 681, 847
SfoI	GGCGCC	1 cut(s)	109
Sfr274I	CTCGAG	1 cut(s)	158
SinI	GGWCC	2 cut(s)	245, 710
SlaI	CTCGAG	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	65, 686
SmlI	CTYRAG	2 cut(s)	158, 378
SmoI	CTYRAG	2 cut(s)	158, 378
Sse9I	AATT	5 cut(s)	33, 236, 362, 563, 801
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	2 cut(s)	228, 919
StyD4I	CCNGG	2 cut(s)	291, 612
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	2 cut(s)	192, 213
TaqI	TCGA	5 cut(s)	9, 14, 123, 159, 855
TasI	AATT	5 cut(s)	33, 236, 362, 563, 801
TauI	GCSGC	6 cut(s)	113, 171, 222, 291, 697, 702
TfiI	GAWTC	4 cut(s)	11, 16, 146, 403
Tru1I	TTAA	1 cut(s)	764
Tru9I	TTAA	1 cut(s)	764
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	375
TspGWI	ACGGA	3 cut(s)	60, 401, 431
TspRI	CASTG	1 cut(s)	342
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	245, 710
XhoI	CTCGAG	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	2 cut(s)	327, 670
XspI	CTAG	2 cut(s)	228, 919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.