AT4G24810

aarF domain-containing protein kinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005306
Physical Location & Seq
Reverse (-)
12786130 .. 12789791
3662 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24810.1

Sequence Viewer

Length: 1317 bp
ATGAACTTCGTCAAGGATGTTAATAAGCACGAGGAGATGTGGGAGAGACAACATGAACTTGCTGCTCATAAAGTTTATTCTATGTGCTCTGACCTTGGTGGTTTCTTCCTTAAGATTGCACAAATTCTAGGGAAACCTGACTTGGCTCCAGCTGCTTGGGTGAGAAAACTCGTCACTTTGTGTGATCAAGCTCCTGCCACACCATTTGATGCCGTTCGAGTTGTCCTGGAGAAAGAGTTAGGTAAAAGCATCGAACAAGTGTTTGAAACATTTGATGAGAAGCCTCTTGGCTCTGCTTCTATTGCTCAGGTACACCGAGCAAGAGTAAAGGGTGACAAGAGGGATGTTGTTGTAAAGGTCCAACATCCTGGCGTTGAGAAGTTGATGATGGTTGATATCAGAAACTTGCAAATATTTGCATTATACATGCAGAAAACTGATATCAAATTTGACTTGTTCTCCATGACAAAGGAAATAGAGAAGCAGATTGGGTATGAATTCGACTTTAAAAGGGAGGCCAATGCAATGGAGAAGATCCGACGTTTTCTATATGATAACAATAGAAAGAGTCCTGTTCTGGTTCCCAGGGTGTTTCCAAATTTGGTGACCAGGAAGGTTCTGGTTATGGAATTCATGAACGGAATCCCGATCTTGAGCCTTGGTGATGAGATGGCAAAAAGAGGGATAAATCCTCATGGTAAAATGGCAGAGGCAGCAAAATTCAATATACTACACAGTTTGTCCCAAGCATATGGCCAAATGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTGGTAAAGGTTCAGAGGTTGCACTGCTGGACTATGGTCAAGTGAAAGAACTCCCTGACCACCTGAGACTTGGTTATGCAAATTTGGTAATTGCCATCGCTGATAACAATGCGTCATTGGCGTTACAGAGCTTTAGGGAACTTGGTATAGCTACAGTAGCCAAGTGTAAGAATGAGCAACAAGAGCTTCTCCAGTTAGCAAAAACAATGTTCGACACAGAGATGCCTCCTGGTACGACAACTCTGCAACCTTTCTCAGAAGACTCTTCGATCAAAAAGATTTCGGTTGAGGCATTTCCAGAGGAACTCTTCTCTGTTCTTCGCACAGTAGTTCTGTTAAGAGGACTCAGCGTAGGGATTGGCATTAATTACTCCTGCGCTCAACACTGGAGGGCTATGGCAGAAGAGGCTTTGCATGCATCTGGAAGACTCTCAACAGGTAGAAAGCAGAAGCGTCGATGTAGTTCTCTTAGAAGGCTATACCCAGGGCCAAGAGAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

438

Amino Acids

49.34

Weight (kDa)

9.13

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 60 - 311 1.8e-64 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 800
AciI CCGC 1 cut(s) 788
AclWI GGATC 3 cut(s) 529, 785, 798
AcoI YGGCCR 1 cut(s) 754
AcsI RAATTY 7 cut(s) 123, 446, 497, 598, 629, 719, 895
AcuI CTGAAG 1 cut(s) 788
AdeI CACNNNGTG 1 cut(s) 180
AfaI GTAC 2 cut(s) 312, 1048
AfiI CCNNNNNNNGG 1 cut(s) 800
AflII CTTAAG 1 cut(s) 110
AgsI TTSAA 2 cut(s) 266, 724
AjnI CCWGG 7 cut(s) 225, 367, 584, 608, 799, 1042, 1297
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 5 cut(s) 152, 191, 945, 965, 1000
AluI AGCT 5 cut(s) 152, 191, 945, 965, 1000
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 2 cut(s) 40, 874
AlwI GGATC 3 cut(s) 529, 785, 798
AoxI GGCC 3 cut(s) 516, 754, 1301
ApeKI GCWGC 3 cut(s) 62, 152, 713
ApoI RAATTY 7 cut(s) 123, 446, 497, 598, 629, 719, 895
AseI ATTAAT 1 cut(s) 1179
AspLEI GCGC 1 cut(s) 1193
AspS9I GGNCC 2 cut(s) 358, 1301
AsuHPI GGTGA 4 cut(s) 172, 344, 616, 674
AvaII GGWCC 1 cut(s) 358
BalI TGGCCA 1 cut(s) 756
BamHI GGATCC 1 cut(s) 790
BauI CACGAG 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 1080, 1246
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 3 cut(s) 49, 139, 725
BccI CCATC 3 cut(s) 382, 664, 917
BceAI ACGGC 1 cut(s) 197
BcgI CGANNNNNNTGC 4 cut(s) 1039, 1073, 1250, 1284
BciT130I CCWGG 7 cut(s) 227, 369, 586, 610, 801, 1044, 1299
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 40, 874
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 966
BfrI CTTAAG 1 cut(s) 110
BisI GCNGC 3 cut(s) 63, 153, 714
BlsI GCNGC 3 cut(s) 64, 154, 715
Bme1390I CCNGG 7 cut(s) 227, 369, 586, 610, 801, 1044, 1299
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 358, 1301
BmiI GGNNCC 3 cut(s) 147, 582, 792
BmrFI CCNGG 7 cut(s) 227, 369, 586, 610, 801, 1044, 1299
BmsI GCATC 4 cut(s) 199, 258, 1026, 1241
BoxI GACNNNNGTC 1 cut(s) 849
BpiI GAAGAC 2 cut(s) 1080, 1246
BpmI CTGGAG 4 cut(s) 132, 248, 989, 1222
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 673
BsaBI GATNNNNATC 1 cut(s) 795
BsaJI CCNNGG 7 cut(s) 94, 584, 585, 658, 800, 1297, 1298
BsaXI ACNNNNNCTCC 4 cut(s) 221, 251, 443, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 800
Bse1I ACTGG 2 cut(s) 1006, 1205
Bse3DI GCAATG 1 cut(s) 531
Bse8I GATNNNNATC 1 cut(s) 795
BseBI CCWGG 7 cut(s) 227, 369, 586, 610, 801, 1044, 1299
BseDI CCNNGG 7 cut(s) 94, 584, 585, 658, 800, 1297, 1298
BseGI GGATG 4 cut(s) 22, 349, 364, 796
BseJI GATNNNNATC 1 cut(s) 795
BseLI CCNNNNNNNGG 1 cut(s) 800
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 4 cut(s) 320, 869, 1083, 1174
BseNI ACTGG 2 cut(s) 1006, 1205
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 3 cut(s) 49, 139, 725
BshFI GGCC 3 cut(s) 518, 756, 1303
BsiHKAI GWGCWC 1 cut(s) 89
BslFI GGGAC 1 cut(s) 727
BslI CCNNNNNNNGG 1 cut(s) 800
BsmAI GTCTC 2 cut(s) 40, 874
BsmFI GGGAC 1 cut(s) 727
BsnI GGCC 3 cut(s) 518, 756, 1303
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 5 cut(s) 184, 534, 648, 790, 1083
BspACI CCGC 1 cut(s) 788
BspANI GGCC 3 cut(s) 518, 756, 1303
BspCNI CTCAG 4 cut(s) 319, 870, 1082, 1173
BspHI TCATGA 1 cut(s) 633
BspLI GGNNCC 3 cut(s) 147, 582, 792
BspPI GGATC 3 cut(s) 529, 785, 798
BspTI CTTAAG 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 531
BsrI ACTGG 2 cut(s) 1006, 1205
BssECI CCNNGG 7 cut(s) 94, 584, 585, 658, 800, 1297, 1298
BssMI GATC 5 cut(s) 184, 534, 648, 790, 1083
BssSI CACGAG 1 cut(s) 29
BssT1I CCWWGG 2 cut(s) 94, 658
Bst2BI CACGAG 1 cut(s) 29
Bst2UI CCWGG 7 cut(s) 227, 369, 586, 610, 801, 1044, 1299
Bst4CI ACNGT 3 cut(s) 737, 970, 1141
Bst6I CTCTTC 4 cut(s) 764, 1084, 1127, 1212
BstAFI CTTAAG 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 1230
BstDEI CTNAG 5 cut(s) 306, 878, 1069, 1160, 1283
BstEII GGTNACC 1 cut(s) 604
BstF5I GGATG 4 cut(s) 22, 349, 364, 796
BstHHI GCGC 1 cut(s) 1193
BstKTI GATC 5 cut(s) 187, 537, 651, 793, 1086
BstMAI GTCTC 2 cut(s) 40, 874
BstMBI GATC 5 cut(s) 184, 534, 648, 790, 1083
BstMWI GCNNNNNNNGC 8 cut(s) 152, 302, 713, 932, 971, 997, 1220, 1229
BstNI CCWGG 7 cut(s) 227, 369, 586, 610, 801, 1044, 1299
BstNSI RCATGY 2 cut(s) 430, 1232
BstPAI GACNNNNGTC 1 cut(s) 849
BstPI GGTNACC 1 cut(s) 604
BstSCI CCNGG 7 cut(s) 225, 367, 584, 608, 799, 1042, 1297
BstSFI CTRYAG 1 cut(s) 966
BstV1I GCAGC 3 cut(s) 49, 139, 725
BstV2I GAAGAC 2 cut(s) 1080, 1246
BstX2I RGATCY 2 cut(s) 534, 790
BstXI CCANNNNNNTGG 4 cut(s) 156, 368, 526, 752
BstYI RGATCY 2 cut(s) 534, 790
BsuRI GGCC 3 cut(s) 518, 756, 1303
BtgZI GCGATG 1 cut(s) 895
BtsCI GGATG 4 cut(s) 22, 349, 364, 796
BtsI GCAGTG 1 cut(s) 836
BtsIMutI CAGTG 2 cut(s) 836, 1198
Cac8I GCNNGC 1 cut(s) 1230
CciI TCATGA 1 cut(s) 633
CfoI GCGC 1 cut(s) 1193
Cfr13I GGNCC 2 cut(s) 358, 1301
CseI GACGC 2 cut(s) 915, 1256
Csp6I GTAC 2 cut(s) 311, 1047
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 7 cut(s) 53, 427, 463, 634, 695, 785, 1229
CviQI GTAC 2 cut(s) 311, 1047
DdeI CTNAG 5 cut(s) 306, 878, 1069, 1160, 1283
DpnI GATC 5 cut(s) 186, 536, 650, 792, 1085
DpnII GATC 5 cut(s) 184, 534, 648, 790, 1083
DraI TTTAAA 1 cut(s) 508
DraIII CACNNNGTG 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 4 cut(s) 764, 1084, 1127, 1212
EarI CTCTTC 4 cut(s) 764, 1084, 1127, 1212
Eco130I CCWWGG 2 cut(s) 94, 658
Eco32I GATATC 2 cut(s) 397, 442
Eco47I GGWCC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 788
Eco91I GGTNACC 1 cut(s) 604
EcoO65I GGTNACC 1 cut(s) 604
EcoRI GAATTC 2 cut(s) 497, 629
EcoRII CCWGG 7 cut(s) 225, 367, 584, 608, 799, 1042, 1297
EcoRV GATATC 2 cut(s) 397, 442
EcoT14I CCWWGG 2 cut(s) 94, 658
EcoT22I ATGCAT 1 cut(s) 1234
ErhI CCWWGG 2 cut(s) 94, 658
FaeI CATG 7 cut(s) 56, 430, 466, 637, 698, 788, 1232
FaqI GGGAC 1 cut(s) 727
FatI CATG 7 cut(s) 52, 426, 462, 633, 694, 784, 1228
FauNDI CATATG 1 cut(s) 751
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 63, 153, 714
FokI GGATG 4 cut(s) 29, 351, 356, 783
Fsp4HI GCNGC 3 cut(s) 63, 153, 714
FspBI CTAG 1 cut(s) 128
GlaI GCGC 1 cut(s) 1192
GluI GCNGC 3 cut(s) 63, 153, 714
GsuI CTGGAG 4 cut(s) 132, 248, 989, 1222
HaeIII GGCC 3 cut(s) 518, 756, 1303
HgaI GACGC 2 cut(s) 915, 1256
HhaI GCGC 1 cut(s) 1193
Hin1II CATG 7 cut(s) 56, 430, 466, 637, 698, 788, 1232
Hin6I GCGC 1 cut(s) 1191
HinP1I GCGC 1 cut(s) 1191
HinfI GANTC 5 cut(s) 568, 642, 1076, 1158, 1242
HphI GGTGA 4 cut(s) 172, 344, 616, 674
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 5 cut(s) 91, 401, 539, 829, 1072
Hpy188III TCNNGA 6 cut(s) 634, 646, 652, 811, 1112, 1236
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 2 cut(s) 543, 1272
HpyAV CCTTC 2 cut(s) 607, 1281
HpyCH4III ACNGT 3 cut(s) 737, 970, 1141
HpyCH4IV ACGT 1 cut(s) 541
HpyF10VI GCNNNNNNNGC 8 cut(s) 152, 302, 713, 932, 971, 997, 1220, 1229
HpyF3I CTNAG 5 cut(s) 306, 878, 1069, 1160, 1283
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 7 cut(s) 56, 430, 466, 637, 698, 788, 1232
HspAI GCGC 1 cut(s) 1191
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 5 cut(s) 184, 534, 648, 790, 1083
LmnI GCTCC 2 cut(s) 151, 196
Lsp1109I GCAGC 3 cut(s) 49, 139, 725
LweI GCATC 4 cut(s) 199, 258, 1026, 1241
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 541
MaeIII GTNAC 4 cut(s) 172, 332, 604, 936
MalI GATC 5 cut(s) 186, 536, 650, 792, 1085
MboI GATC 5 cut(s) 184, 534, 648, 790, 1083
MboII GAAGA 9 cut(s) 97, 544, 781, 1071, 1085, 1114, 1124, 1229, 1251
MflI RGATCY 2 cut(s) 534, 790
MhlI GDGCHC 1 cut(s) 89
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 9 cut(s) 123, 446, 497, 598, 629, 719, 895, 903, 1180
MluNI TGGCCA 1 cut(s) 756
MlyI GAGTC 4 cut(s) 577, 1070, 1152, 1236
MmeI TCCRAC 2 cut(s) 385, 562
Mox20I TGGCCA 1 cut(s) 756
Mph1103I ATGCAT 1 cut(s) 1234
MscI TGGCCA 1 cut(s) 756
MseI TTAA 6 cut(s) 21, 111, 507, 1151, 1179, 1315
MslI CAYNNNNRTG 1 cut(s) 1034
Msp20I TGGCCA 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 152
MspCI CTTAAG 1 cut(s) 110
MspR9I CCNGG 7 cut(s) 227, 369, 586, 610, 801, 1044, 1299
MvaI CCWGG 7 cut(s) 227, 369, 586, 610, 801, 1044, 1299
MwoI GCNNNNNNNGC 8 cut(s) 152, 302, 713, 932, 971, 997, 1220, 1229
NdeI CATATG 1 cut(s) 751
NdeII GATC 5 cut(s) 184, 534, 648, 790, 1083
NlaIII CATG 7 cut(s) 56, 430, 466, 637, 698, 788, 1232
NlaIV GGNNCC 3 cut(s) 147, 582, 792
NmuCI GTSAC 3 cut(s) 172, 332, 604
NsiI ATGCAT 1 cut(s) 1234
NspI RCATGY 2 cut(s) 430, 1232
PaeI GCATGC 1 cut(s) 1232
PagI TCATGA 1 cut(s) 633
PasI CCCWGGG 2 cut(s) 585, 1298
PfeI GAWTC 1 cut(s) 642
PflMI CCANNNNNTGG 1 cut(s) 800
PfoI TCCNGGA 1 cut(s) 225
PkrI GCNGC 3 cut(s) 64, 154, 715
PleI GAGTC 4 cut(s) 576, 1070, 1152, 1236
PpsI GAGTC 4 cut(s) 576, 1070, 1152, 1236
PshAI GACNNNNGTC 1 cut(s) 849
PshBI ATTAAT 1 cut(s) 1179
Psp6I CCWGG 7 cut(s) 225, 367, 584, 608, 799, 1042, 1297
PspEI GGTNACC 1 cut(s) 604
PspGI CCWGG 7 cut(s) 225, 367, 584, 608, 799, 1042, 1297
PspN4I GGNNCC 3 cut(s) 147, 582, 792
PspPI GGNCC 2 cut(s) 358, 1301
PsuI RGATCY 2 cut(s) 534, 790
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 2 cut(s) 312, 1048
RsaNI GTAC 2 cut(s) 311, 1047
RseI CAYNNNNRTG 1 cut(s) 1034
SaqAI TTAA 6 cut(s) 21, 111, 507, 1151, 1179, 1315
SatI GCNGC 3 cut(s) 63, 153, 714
Sau3AI GATC 5 cut(s) 184, 534, 648, 790, 1083
Sau96I GGNCC 2 cut(s) 358, 1301
SchI GAGTC 4 cut(s) 577, 1070, 1152, 1236
ScrFI CCNGG 7 cut(s) 227, 369, 586, 610, 801, 1044, 1299
SduI GDGCHC 1 cut(s) 89
SfaNI GCATC 4 cut(s) 199, 258, 1026, 1241
SfcI CTRYAG 1 cut(s) 966
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 1034
SmlI CTYRAG 2 cut(s) 110, 652
SmoI CTYRAG 2 cut(s) 110, 652
SphI GCATGC 1 cut(s) 1232
Sse9I AATT 9 cut(s) 123, 446, 497, 598, 629, 719, 895, 903, 1180
SsiI CCGC 1 cut(s) 788
SspI AATATT 1 cut(s) 414
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 7 cut(s) 225, 367, 584, 608, 799, 1042, 1297
StyI CCWWGG 2 cut(s) 94, 658
TaaI ACNGT 3 cut(s) 737, 970, 1141
TaiI ACGT 1 cut(s) 544
TaqI TCGA 6 cut(s) 217, 252, 501, 1026, 1082, 1270
TasI AATT 9 cut(s) 123, 446, 497, 598, 629, 719, 895, 903, 1180
TfiI GAWTC 1 cut(s) 642
Tru1I TTAA 6 cut(s) 21, 111, 507, 1151, 1179, 1315
Tru9I TTAA 6 cut(s) 21, 111, 507, 1151, 1179, 1315
TscAI CASTG 2 cut(s) 843, 1205
TseFI GTSAC 3 cut(s) 172, 332, 604
TseI GCWGC 3 cut(s) 62, 152, 713
Tsp45I GTSAC 3 cut(s) 172, 332, 604
TspDTI ATGAA 6 cut(s) 17, 69, 510, 622, 650, 773
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 2 cut(s) 843, 1205
Van91I CCANNNNNTGG 1 cut(s) 800
Vha464I CTTAAG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 358
VspI ATTAAT 1 cut(s) 1179
XapI RAATTY 7 cut(s) 123, 446, 497, 598, 629, 719, 895
XceI RCATGY 2 cut(s) 430, 1232
XcmI CCANNNNNNNNNTGG 2 cut(s) 616, 881
XspI CTAG 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 1234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.