Rh7AG114700

AarF domain-containing protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005306
Physical Location & Seq
Reverse (-)
8948526 .. 8953049
4524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG114700.1

Sequence Viewer

Length: 1092 bp
ATGCTTCCTCTGCCTCCTATTGATCTCAAAGATGTTCGGCAGAAGCTGGCCACCCAATTCAGGCCTTGGGAACGCTCCTTTCAGTTCTGGGCTCGAGCCGTTGATATCTACACCGGCTACAAGGTGTTTCAGCTGCGAGTGAGTTTTGTGAAGGATGCCGAGAAACAAGAGGAAATGTGGGAGAGGCAACATGAAGTTGCGGCCGACAAGATATATGCTATGTGTTCGGACATGGGCGGTTTCTTCCTCAAGGTTGCCCAAATTGTTGGTAAGCCAGACTTGGCCCCAGCTGCATGGGTGAAAAGGCTTGTTACATTGTGTGATCATGCTCCTGCAACACCATTTGATGCCGTTCAACTTATGCTGGAAACTGAGTTGGGTCGAAGTGTTGGCGAACTGTTTGAGAGATTCGATGTGGATCCTATTGGCTCTGCTTCGATTGCACAGGTTCACCGAGCAAGATTGAGAGGTGATAAGAGTGATATTGTTGTCAAGGTGCAACATCCTGGAGTTCAGGATCTAATGATGACAGATATCCGTAATTTGCAAGCCTTTGCTTTATACATTCAAAAGACAGATGTCAAATTTGATCTATACTCCGTAACCAAGGAAATGGAGACACAGATTGGTTATGAATTCGACTTCATGAGGGAAGCTAATGCTATGGAAAAAATTCGAAAGTTTTTGTATGAGAATAACAAAAAGACTCCTGTTGTGGTTCCTCGACTGATACGAGACCTAGTCACTAGGAGAGTCTTAGTTATGGAATATATTGATGGAATACCAATCCTGAATCTTGGTGATGAAATTGCGAAAAGGGGTATAAATCCTAGTGGTGAGGTTGCAGCCGCGGCAAAGCAGAAAATCCTCCAAAGTTTGACACTAGCATATGGACAAATGATTCTGAAGAATGGTTTCTTCCATGCAGATCCCCACCCAGGAAATATCCTAATCTGTAAAGGTTCAGAGGTTGCGTTGCTCGACTACGGCCAAGTGAAAGATCTCCCAGATGAGTTGAGACTTGGTTATGCAAATCTTGTTCTTGCAATAGCTGATGGTGACCCTGTAAGAGCCTTGGAGAGCTATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

363

Amino Acids

41.18

Weight (kDa)

6.35

Isoelectric Point (pI)

27.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 106 - 359 2.6e-62 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 851
AciI CCGC 4 cut(s) 200, 237, 849, 851
AclWI GGATC 4 cut(s) 413, 426, 525, 923
AcoI YGGCCR 3 cut(s) 48, 201, 988
AcsI RAATTY 3 cut(s) 584, 635, 672
AcuI CTGAAG 1 cut(s) 926
AfiI CCNNNNNNNGG 2 cut(s) 60, 938
AgsI TTSAA 2 cut(s) 356, 569
AjnI CCWGG 2 cut(s) 505, 937
AluBI AGCT 6 cut(s) 46, 133, 290, 656, 1052, 1083
AluI AGCT 6 cut(s) 46, 133, 290, 656, 1052, 1083
Alw26I GTCTC 3 cut(s) 611, 729, 1012
AlwI GGATC 4 cut(s) 413, 426, 525, 923
AlwNI CAGNNNCTG 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 5 cut(s) 48, 62, 201, 282, 988
ApeKI GCWGC 3 cut(s) 133, 290, 845
ApoI RAATTY 3 cut(s) 584, 635, 672
Asp700I GAANNNNTTC 2 cut(s) 672, 914
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 6 cut(s) 310, 443, 482, 812, 848, 1070
AsuII TTCGAA 1 cut(s) 676
AvaI CYCGRG 1 cut(s) 93
BalI TGGCCA 1 cut(s) 50
BamHI GGATCC 1 cut(s) 418
BanII GRGCYC 1 cut(s) 94
BbvI GCAGC 3 cut(s) 120, 277, 857
BccI CCATC 2 cut(s) 770, 1049
BceAI ACGGC 3 cut(s) 83, 335, 1003
BciT130I CCWGG 2 cut(s) 507, 939
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 3 cut(s) 611, 729, 1012
BfaI CTAG 4 cut(s) 740, 747, 831, 884
BfmI CTRYAG 1 cut(s) 1084
BglII AGATCT 1 cut(s) 1000
BisI GCNGC 6 cut(s) 134, 201, 291, 846, 849, 852
BlsI GCNGC 6 cut(s) 135, 202, 292, 847, 850, 853
Bme1390I CCNGG 2 cut(s) 507, 939
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 3 cut(s) 285, 420, 720
BmrFI CCNGG 2 cut(s) 507, 939
BmsI GCATC 2 cut(s) 145, 337
BoxI GACNNNNGTC 1 cut(s) 578
BpmI CTGGAG 1 cut(s) 528
Bpu14I TTCGAA 1 cut(s) 676
BpuEI CTTGAG 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 729
BsaJI CCNNGG 5 cut(s) 65, 606, 849, 937, 1074
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 938
Bse118I RCCGGY 1 cut(s) 113
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 2 cut(s) 507, 939
BseDI CCNNGG 5 cut(s) 65, 606, 849, 937, 1074
BseGI GGATG 2 cut(s) 160, 502
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 2 cut(s) 60, 938
BseMII CTCAG 1 cut(s) 363
BseX3I CGGCCG 1 cut(s) 201
BseXI GCAGC 3 cut(s) 120, 277, 857
BseYI CCCAGC 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 851
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 5 cut(s) 50, 64, 203, 284, 990
BsiEI CGRYCG 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 60, 938
BsmAI GTCTC 3 cut(s) 611, 729, 1012
BsnI GGCC 5 cut(s) 50, 64, 203, 284, 990
Bso31I GGTCTC 1 cut(s) 729
BsoBI CYCGRG 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 676
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
BspACI CCGC 4 cut(s) 200, 237, 849, 851
BspANI GGCC 5 cut(s) 50, 64, 203, 284, 990
BspCNI CTCAG 1 cut(s) 364
BspFNI CGCG 1 cut(s) 851
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 3 cut(s) 285, 420, 720
BspPI GGATC 4 cut(s) 413, 426, 525, 923
BspT104I TTCGAA 1 cut(s) 676
BspTNI GGTCTC 1 cut(s) 729
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 5 cut(s) 65, 606, 849, 937, 1074
BssMI GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
BssT1I CCWWGG 3 cut(s) 65, 606, 1074
Bst2UI CCWGG 2 cut(s) 507, 939
Bst4CI ACNGT 1 cut(s) 399
BstBI TTCGAA 1 cut(s) 676
BstC8I GCNNGC 2 cut(s) 48, 549
BstDEI CTNAG 2 cut(s) 372, 757
BstDSI CCRYGG 1 cut(s) 849
BstEII GGTNACC 1 cut(s) 1058
BstF5I GGATG 2 cut(s) 160, 502
BstFNI CGCG 1 cut(s) 851
BstKTI GATC 7 cut(s) 25, 325, 421, 520, 592, 931, 1003
BstMAI GTCTC 3 cut(s) 611, 729, 1012
BstMBI GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 4 cut(s) 10, 290, 440, 851
BstNI CCWGG 2 cut(s) 507, 939
BstPAI GACNNNNGTC 1 cut(s) 578
BstPI GGTNACC 1 cut(s) 1058
BstSCI CCNGG 2 cut(s) 505, 937
BstSFI CTRYAG 1 cut(s) 1084
BstUI CGCG 1 cut(s) 851
BstV1I GCAGC 3 cut(s) 120, 277, 857
BstX2I RGATCY 4 cut(s) 418, 517, 928, 1000
BstXI CCANNNNNNTGG 3 cut(s) 266, 294, 613
BstYI RGATCY 4 cut(s) 418, 517, 928, 1000
BstZI CGGCCG 1 cut(s) 201
BsuRI GGCC 5 cut(s) 50, 64, 203, 284, 990
BtgI CCRYGG 1 cut(s) 849
BtsCI GGATG 2 cut(s) 160, 502
Cac8I GCNNGC 2 cut(s) 48, 549
CaiI CAGNNNCTG 1 cut(s) 46
CciI TCATGA 1 cut(s) 645
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 283
Cfr42I CCGCGG 1 cut(s) 852
CviAII CATG 6 cut(s) 191, 232, 294, 326, 646, 923
DdeI CTNAG 2 cut(s) 372, 757
DpnI GATC 7 cut(s) 24, 324, 420, 519, 591, 930, 1002
DpnII GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
EaeI YGGCCR 3 cut(s) 48, 201, 988
EagI CGGCCG 1 cut(s) 201
EclXI CGGCCG 1 cut(s) 201
Eco130I CCWWGG 3 cut(s) 65, 606, 1074
Eco147I AGGCCT 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 729
Eco32I GATATC 2 cut(s) 106, 535
Eco52I CGGCCG 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 926
Eco88I CYCGRG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 1058
EcoO65I GGTNACC 1 cut(s) 1058
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 505, 937
EcoRV GATATC 2 cut(s) 106, 535
EcoT14I CCWWGG 3 cut(s) 65, 606, 1074
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 3 cut(s) 65, 606, 1074
FaeI CATG 6 cut(s) 194, 235, 297, 329, 649, 926
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 6 cut(s) 190, 231, 293, 325, 645, 922
FauNDI CATATG 1 cut(s) 889
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 6 cut(s) 134, 201, 291, 846, 849, 852
FokI GGATG 2 cut(s) 167, 489
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 6 cut(s) 134, 201, 291, 846, 849, 852
FspBI CTAG 4 cut(s) 740, 747, 831, 884
GluI GCNGC 6 cut(s) 134, 201, 291, 846, 849, 852
GsaI CCCAGC 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 5 cut(s) 50, 64, 203, 284, 990
HapII CCGG 1 cut(s) 114
Hin1II CATG 6 cut(s) 194, 235, 297, 329, 649, 926
HinfI GANTC 5 cut(s) 408, 706, 753, 793, 901
HpaII CCGG 1 cut(s) 114
HphI GGTGA 6 cut(s) 310, 443, 482, 812, 848, 1070
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 3 cut(s) 229, 906, 967
Hpy188III TCNNGA 3 cut(s) 515, 646, 790
Hpy8I GTNNAC 1 cut(s) 451
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4V TGCA 9 cut(s) 293, 335, 443, 499, 547, 845, 926, 1031, 1046
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 290, 440, 851
HpyF3I CTNAG 2 cut(s) 372, 757
Hsp92II CATG 6 cut(s) 194, 235, 297, 329, 649, 926
Ksp22I TGATCA 1 cut(s) 322
KspI CCGCGG 1 cut(s) 852
Kzo9I GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
LmnI GCTCC 2 cut(s) 80, 334
Lsp1109I GCAGC 3 cut(s) 120, 277, 857
LweI GCATC 2 cut(s) 145, 337
MaeI CTAG 4 cut(s) 740, 747, 831, 884
MaeIII GTNAC 4 cut(s) 310, 601, 742, 1058
MalI GATC 7 cut(s) 24, 324, 420, 519, 591, 930, 1002
MboI GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
MboII GAAGA 3 cut(s) 235, 910, 919
MflI RGATCY 4 cut(s) 418, 517, 928, 1000
MhlI GDGCHC 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 7 cut(s) 56, 261, 541, 584, 635, 672, 807
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 2 cut(s) 700, 762
Mox20I TGGCCA 1 cut(s) 50
MroXI GAANNNNTTC 2 cut(s) 672, 914
MscI TGGCCA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 3 cut(s) 133, 290, 851
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 2 cut(s) 507, 939
MvaI CCWGG 2 cut(s) 507, 939
MvnI CGCG 1 cut(s) 851
MwoI GCNNNNNNNGC 4 cut(s) 10, 290, 440, 851
NdeI CATATG 1 cut(s) 889
NdeII GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
NlaIII CATG 6 cut(s) 194, 235, 297, 329, 649, 926
NlaIV GGNNCC 3 cut(s) 285, 420, 720
NmeAIII GCCGAG 1 cut(s) 184
NmuCI GTSAC 2 cut(s) 742, 1058
NspV TTCGAA 1 cut(s) 676
PaeR7I CTCGAG 1 cut(s) 93
PagI TCATGA 1 cut(s) 645
PceI AGGCCT 1 cut(s) 64
PcsI WCGNNNNNNNCGW 1 cut(s) 730
PdmI GAANNNNTTC 2 cut(s) 672, 914
PfeI GAWTC 3 cut(s) 408, 793, 901
PflFI GACNNNGTC 1 cut(s) 740
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 6 cut(s) 135, 202, 292, 847, 850, 853
PleI GAGTC 2 cut(s) 700, 761
PpsI GAGTC 2 cut(s) 700, 761
PshAI GACNNNNGTC 1 cut(s) 578
Psp6I CCWGG 2 cut(s) 505, 937
PspEI GGTNACC 1 cut(s) 1058
PspFI CCCAGC 1 cut(s) 286
PspGI CCWGG 2 cut(s) 505, 937
PspN4I GGNNCC 3 cut(s) 285, 420, 720
PspPI GGNCC 1 cut(s) 283
PspXI VCTCGAGB 1 cut(s) 93
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 4 cut(s) 418, 517, 928, 1000
PsyI GACNNNGTC 1 cut(s) 740
PvuII CAGCTG 2 cut(s) 133, 290
SacII CCGCGG 1 cut(s) 852
SatI GCNGC 6 cut(s) 134, 201, 291, 846, 849, 852
Sau3AI GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 2 cut(s) 700, 762
ScrFI CCNGG 2 cut(s) 507, 939
SduI GDGCHC 1 cut(s) 94
SfaNI GCATC 2 cut(s) 145, 337
SfcI CTRYAG 1 cut(s) 1084
Sfr274I CTCGAG 1 cut(s) 93
Sfr303I CCGCGG 1 cut(s) 852
SfuI TTCGAA 1 cut(s) 676
SgrBI CCGCGG 1 cut(s) 852
SlaI CTCGAG 1 cut(s) 93
SmlI CTYRAG 2 cut(s) 93, 248
SmoI CTYRAG 2 cut(s) 93, 248
Sse9I AATT 7 cut(s) 56, 261, 541, 584, 635, 672, 807
SseBI AGGCCT 1 cut(s) 64
SsiI CCGC 4 cut(s) 200, 237, 849, 851
SspMI CTAG 4 cut(s) 740, 747, 831, 884
StuI AGGCCT 1 cut(s) 64
StyD4I CCNGG 2 cut(s) 505, 937
StyI CCWWGG 3 cut(s) 65, 606, 1074
TaaI ACNGT 1 cut(s) 399
TaqI TCGA 8 cut(s) 94, 382, 411, 437, 639, 676, 724, 981
TasI AATT 7 cut(s) 56, 261, 541, 584, 635, 672, 807
TauI GCSGC 3 cut(s) 203, 851, 854
TfiI GAWTC 3 cut(s) 408, 793, 901
TseFI GTSAC 2 cut(s) 742, 1058
TseI GCWGC 3 cut(s) 133, 290, 845
Tsp45I GTSAC 2 cut(s) 742, 1058
TspDTI ATGAA 4 cut(s) 207, 634, 648, 819
TspGWI ACGGA 2 cut(s) 527, 589
Tth111I GACNNNGTC 1 cut(s) 740
XapI RAATTY 3 cut(s) 584, 635, 672
XhoI CTCGAG 1 cut(s) 93
XmnI GAANNNNTTC 2 cut(s) 672, 914
XspI CTAG 4 cut(s) 740, 747, 831, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.