RLG00000004486

AarF domain-containing protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005306
Physical Location & Seq
Forward (+)
59764179 .. 59768427
4249 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004486

Sequence Viewer

Length: 1449 bp
ATGCTTCCTCTGCCTCCTATTGATCTAAAAGATGTTCGGCAGAAGCTGGCCACCCAATTCAGGCCTTGGGAACGCTCCTTTCAGTTCTGGGCTCGAGCCGTTGATATCTACACCGGCTACAAGGTGTTTCAGCTGCGAGTGAGTTTTGTGAAGGATGCCAAGAAACAAGAGGAAATGTGGGAGAGGCAACATGAAGTTGCGGCCGACAAGATATATGCTATGTGTTCGGACATGGGCGGTTTCTTCCTCAAGGTTGCCCAAATTGTTGGGAAGCCAGACTTGGCCCCAGCTGCATGGGTGAAAAGGCTTGTTACATTGTGTGATCATGCTCCTGCAACTCCATTTGATGCCATTCAACTGATGCTGGAAACTGAGTTGGGTCGAAGTGTTGGCGAACTGTTTGAGAGATTCGATGTGGATCCTATTGGCTCTGCTTCGATTGCACAGGTTCACCGAGCAAGATTGAGGGGTGATAAGAGTGATATTGTTGTCAAGGTGCAACATCCTGGAGTTCAGGATCTAATGATGACAGATATCCGTAACTTGCAAGCCTTTGCTTTATACATTCAAAAGACAGATGTCAAATTTGATCTATACTCCGTAACCAAGGAAATGGAGACACAGATTGGTTATGAATTCGACTTCATGAGGGAAGCTAATGCTATGGAAAAAATTCGAAAGTTTTTGTATGAGAATAACAAAAAGACTCCTGTTGTGGTTCCTCGACTAATACGAGACCTAGTCACTAGGAGAGTCTTAGTTATGGAATATATTGATGGAATACCAATCCTGAATCTTGGTGATGAAATTGCGAAAAGGGGTATAAATCCTAGTGGTGAGGTTGCAGCCGCAGCAAAGCAGAAAATCCTCCAAAGTTTGACACTAGCATATGGACAAATGATTCTGAAGAATGGTTTCTTCCATGCAGATCCCCACCCAGGAAATATCCTAATCTGTAAAGGTTCAGAGGTTGCGTTGCTCGACTACGGCCAAGTGAAAGATCTCCCAGATGAGTTGAGACTTGGTTATGCAAATCTTGTTCTTGCAATAGCTGATGGCGACCCTGTAAGAGCCTTGGAGAGCTATAGGGAACTTGGCATAGAAACCTTGAGCTCGTGTGAAAATGAACAGAAGGAAATGTTGAAGTTGGCCGAGACAATGTTTGACACAAAATTACCCCCTGGAGTGACAATGTTGCAGCCTTTTTCGGAGGAATCTTCTATTAAGAAGATTGCAGTTCAGGCTTTTCCAGAGGAGTTGTTTTCTGTACTTCGAACAGTGCATCTGCTGAGAGGGCTTAGTGTTGGACTGGGAATCAACTACTCATGTGCAGAACAATGGAGACCCATTGCAGAAGAAGCTCTGTTTCGTGCTGGGAGATTAAAAGGTAAAGATATCAAGGGTAGAAGACGTAGAGGTGGTTTATTAAGGTTACTCTGGAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

483

Amino Acids

54.67

Weight (kDa)

8.58

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 106 - 359 6e-62 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 200, 237, 849
AclWI GGATC 4 cut(s) 413, 426, 525, 923
AcoI YGGCCR 4 cut(s) 48, 201, 988, 1149
AcsI RAATTY 3 cut(s) 584, 635, 672
AcuI CTGAAG 1 cut(s) 926
AfaI GTAC 1 cut(s) 1269
AfiI CCNNNNNNNGG 2 cut(s) 60, 938
AgsI TTSAA 3 cut(s) 356, 569, 1144
AjnI CCWGG 3 cut(s) 505, 937, 1180
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 8 cut(s) 46, 133, 290, 656, 1052, 1083, 1113, 1361
AluI AGCT 8 cut(s) 46, 133, 290, 656, 1052, 1083, 1113, 1361
Alw21I GWGCWC 1 cut(s) 1115
Alw26I GTCTC 5 cut(s) 611, 729, 1012, 1148, 1336
AlwI GGATC 4 cut(s) 413, 426, 525, 923
AlwNI CAGNNNCTG 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 6 cut(s) 48, 62, 201, 282, 988, 1149
ApeKI GCWGC 5 cut(s) 133, 290, 845, 851, 1198
ApoI RAATTY 3 cut(s) 584, 635, 672
Asp700I GAANNNNTTC 2 cut(s) 672, 914
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 5 cut(s) 310, 443, 482, 812, 848
AsuII TTCGAA 2 cut(s) 676, 1273
AvaI CYCGRG 1 cut(s) 93
BalI TGGCCA 1 cut(s) 50
BamHI GGATCC 1 cut(s) 418
BanII GRGCYC 2 cut(s) 94, 1115
BauI CACGAG 1 cut(s) 1114
BbsI GAAGAC 1 cut(s) 1414
Bbv12I GWGCWC 1 cut(s) 1115
BbvI GCAGC 5 cut(s) 120, 277, 857, 863, 1210
BccI CCATC 2 cut(s) 770, 1049
BceAI ACGGC 2 cut(s) 83, 1003
BciT130I CCWGG 3 cut(s) 507, 939, 1182
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 5 cut(s) 611, 729, 1012, 1148, 1336
BfaI CTAG 4 cut(s) 740, 747, 831, 884
BfmI CTRYAG 1 cut(s) 1084
BglII AGATCT 1 cut(s) 1000
BisI GCNGC 7 cut(s) 134, 201, 291, 846, 849, 852, 1199
BlsI GCNGC 7 cut(s) 135, 202, 292, 847, 850, 853, 1200
Bme1390I CCNGG 3 cut(s) 507, 939, 1182
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 3 cut(s) 285, 420, 720
BmrFI CCNGG 3 cut(s) 507, 939, 1182
BmrI ACTGGG 1 cut(s) 1319
BmsI GCATC 4 cut(s) 145, 337, 351, 1291
BmuI ACTGGG 1 cut(s) 1319
BoxI GACNNNNGTC 1 cut(s) 578
BpiI GAAGAC 1 cut(s) 1414
BpmI CTGGAG 2 cut(s) 528, 1203
Bpu14I TTCGAA 2 cut(s) 676, 1273
BpuEI CTTGAG 2 cut(s) 233, 1129
BsaBI GATNNNNATC 1 cut(s) 417
BsaI GGTCTC 2 cut(s) 729, 1336
BsaJI CCNNGG 5 cut(s) 65, 606, 937, 1074, 1180
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 938
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 1314
Bse3DI GCAATG 1 cut(s) 1347
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 3 cut(s) 507, 939, 1182
BseDI CCNNGG 5 cut(s) 65, 606, 937, 1074, 1180
BseGI GGATG 2 cut(s) 160, 502
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 2 cut(s) 60, 938
BseMI GCAATG 1 cut(s) 1347
BseMII CTCAG 2 cut(s) 363, 1280
BseNI ACTGG 1 cut(s) 1314
BseRI GAGGAG 1 cut(s) 1268
BseX3I CGGCCG 1 cut(s) 201
BseXI GCAGC 5 cut(s) 120, 277, 857, 863, 1210
BseYI CCCAGC 2 cut(s) 286, 1373
BsgI GTGCAG 1 cut(s) 1350
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 6 cut(s) 50, 64, 203, 284, 990, 1151
BsiEI CGRYCG 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 1115
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 60, 938
BsmAI GTCTC 5 cut(s) 611, 729, 1012, 1148, 1336
BsnI GGCC 6 cut(s) 50, 64, 203, 284, 990, 1151
Bso31I GGTCTC 2 cut(s) 729, 1336
BsoBI CYCGRG 1 cut(s) 93
Bsp119I TTCGAA 2 cut(s) 676, 1273
Bsp1286I GDGCHC 2 cut(s) 94, 1115
Bsp143I GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
BspACI CCGC 3 cut(s) 200, 237, 849
BspANI GGCC 6 cut(s) 50, 64, 203, 284, 990, 1151
BspCNI CTCAG 2 cut(s) 364, 1281
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 3 cut(s) 285, 420, 720
BspPI GGATC 4 cut(s) 413, 426, 525, 923
BspT104I TTCGAA 2 cut(s) 676, 1273
BspTNI GGTCTC 2 cut(s) 729, 1336
BsrDI GCAATG 1 cut(s) 1347
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 1 cut(s) 1314
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 5 cut(s) 65, 606, 937, 1074, 1180
BssMI GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
BssSI CACGAG 1 cut(s) 1114
BssT1I CCWWGG 3 cut(s) 65, 606, 1074
Bst2BI CACGAG 1 cut(s) 1114
Bst2UI CCWGG 3 cut(s) 507, 939, 1182
Bst4CI ACNGT 2 cut(s) 399, 1279
BstBI TTCGAA 2 cut(s) 676, 1273
BstC8I GCNNGC 2 cut(s) 48, 549
BstDEI CTNAG 4 cut(s) 372, 757, 1289, 1298
BstF5I GGATG 2 cut(s) 160, 502
BstKTI GATC 7 cut(s) 25, 325, 421, 520, 592, 931, 1003
BstMAI GTCTC 5 cut(s) 611, 729, 1012, 1148, 1336
BstMBI GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 7 cut(s) 10, 290, 440, 851, 1241, 1294, 1358
BstNI CCWGG 3 cut(s) 507, 939, 1182
BstPAI GACNNNNGTC 1 cut(s) 578
BstSCI CCNGG 3 cut(s) 505, 937, 1180
BstSFI CTRYAG 1 cut(s) 1084
BstV1I GCAGC 5 cut(s) 120, 277, 857, 863, 1210
BstV2I GAAGAC 1 cut(s) 1414
BstX2I RGATCY 4 cut(s) 418, 517, 928, 1000
BstXI CCANNNNNNTGG 3 cut(s) 266, 294, 613
BstYI RGATCY 4 cut(s) 418, 517, 928, 1000
BstZI CGGCCG 1 cut(s) 201
BsuRI GGCC 6 cut(s) 50, 64, 203, 284, 990, 1151
BtsCI GGATG 2 cut(s) 160, 502
BtsIMutI CAGTG 1 cut(s) 1284
Cac8I GCNNGC 2 cut(s) 48, 549
CaiI CAGNNNCTG 1 cut(s) 46
CciI TCATGA 1 cut(s) 645
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 1268
CviAII CATG 7 cut(s) 191, 232, 294, 326, 646, 923, 1326
CviQI GTAC 1 cut(s) 1268
DdeI CTNAG 4 cut(s) 372, 757, 1289, 1298
DpnI GATC 7 cut(s) 24, 324, 420, 519, 591, 930, 1002
DpnII GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
EaeI YGGCCR 4 cut(s) 48, 201, 988, 1149
EagI CGGCCG 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 1113
EclXI CGGCCG 1 cut(s) 201
Eco130I CCWWGG 3 cut(s) 65, 606, 1074
Eco147I AGGCCT 1 cut(s) 64
Eco24I GRGCYC 2 cut(s) 94, 1115
Eco31I GGTCTC 2 cut(s) 729, 1336
Eco32I GATATC 3 cut(s) 106, 535, 1396
Eco52I CGGCCG 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 1113
Eco57I CTGAAG 1 cut(s) 926
Eco88I CYCGRG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 1113
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 3 cut(s) 505, 937, 1180
EcoRV GATATC 3 cut(s) 106, 535, 1396
EcoT14I CCWWGG 3 cut(s) 65, 606, 1074
EcoT38I GRGCYC 2 cut(s) 94, 1115
ErhI CCWWGG 3 cut(s) 65, 606, 1074
FaeI CATG 7 cut(s) 194, 235, 297, 329, 649, 926, 1329
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 7 cut(s) 190, 231, 293, 325, 645, 922, 1325
FauNDI CATATG 1 cut(s) 889
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 7 cut(s) 134, 201, 291, 846, 849, 852, 1199
FokI GGATG 2 cut(s) 167, 489
FriOI GRGCYC 2 cut(s) 94, 1115
Fsp4HI GCNGC 7 cut(s) 134, 201, 291, 846, 849, 852, 1199
FspBI CTAG 4 cut(s) 740, 747, 831, 884
GluI GCNGC 7 cut(s) 134, 201, 291, 846, 849, 852, 1199
GsaI CCCAGC 2 cut(s) 290, 1377
GsuI CTGGAG 2 cut(s) 528, 1203
HaeIII GGCC 6 cut(s) 50, 64, 203, 284, 990, 1151
HapII CCGG 1 cut(s) 114
Hin1II CATG 7 cut(s) 194, 235, 297, 329, 649, 926, 1329
HinfI GANTC 7 cut(s) 408, 706, 753, 793, 901, 1214, 1314
HpaII CCGG 1 cut(s) 114
HphI GGTGA 5 cut(s) 310, 443, 482, 812, 848
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 4 cut(s) 229, 906, 967, 1210
Hpy188III TCNNGA 5 cut(s) 515, 646, 790, 1250, 1438
Hpy8I GTNNAC 1 cut(s) 451
HpyAV CCTTC 2 cut(s) 145, 1126
HpyCH4III ACNGT 2 cut(s) 399, 1279
HpyCH4IV ACGT 1 cut(s) 1411
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 290, 440, 851, 1241, 1294, 1358
HpyF3I CTNAG 4 cut(s) 372, 757, 1289, 1298
HpySE526I ACGT 1 cut(s) 1411
Hsp92II CATG 7 cut(s) 194, 235, 297, 329, 649, 926, 1329
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
LmnI GCTCC 2 cut(s) 80, 334
Lsp1109I GCAGC 5 cut(s) 120, 277, 857, 863, 1210
LweI GCATC 4 cut(s) 145, 337, 351, 1291
MaeI CTAG 4 cut(s) 740, 747, 831, 884
MaeII ACGT 1 cut(s) 1411
MaeIII GTNAC 6 cut(s) 310, 539, 601, 742, 1186, 1431
MalI GATC 7 cut(s) 24, 324, 420, 519, 591, 930, 1002
MboI GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
MboII GAAGA 7 cut(s) 235, 910, 919, 1209, 1240, 1367, 1419
MflI RGATCY 4 cut(s) 418, 517, 928, 1000
MhlI GDGCHC 2 cut(s) 94, 1115
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 7 cut(s) 56, 261, 584, 635, 672, 807, 1172
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 2 cut(s) 700, 762
MmeI TCCRAC 1 cut(s) 1285
Mox20I TGGCCA 1 cut(s) 50
MroXI GAANNNNTTC 2 cut(s) 672, 914
MscI TGGCCA 1 cut(s) 50
MseI TTAA 3 cut(s) 1224, 1382, 1427
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 2 cut(s) 133, 290
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 3 cut(s) 507, 939, 1182
MvaI CCWGG 3 cut(s) 507, 939, 1182
MwoI GCNNNNNNNGC 7 cut(s) 10, 290, 440, 851, 1241, 1294, 1358
NdeI CATATG 1 cut(s) 889
NdeII GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
NlaIII CATG 7 cut(s) 194, 235, 297, 329, 649, 926, 1329
NlaIV GGNNCC 3 cut(s) 285, 420, 720
NmeAIII GCCGAG 1 cut(s) 1177
NmuCI GTSAC 2 cut(s) 742, 1186
NspV TTCGAA 2 cut(s) 676, 1273
PaeR7I CTCGAG 1 cut(s) 93
PagI TCATGA 1 cut(s) 645
PceI AGGCCT 1 cut(s) 64
PcsI WCGNNNNNNNCGW 1 cut(s) 730
PdmI GAANNNNTTC 2 cut(s) 672, 914
PfeI GAWTC 5 cut(s) 408, 793, 901, 1214, 1314
PflFI GACNNNGTC 1 cut(s) 740
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 7 cut(s) 135, 202, 292, 847, 850, 853, 1200
PleI GAGTC 2 cut(s) 700, 761
PpsI GAGTC 2 cut(s) 700, 761
PshAI GACNNNNGTC 1 cut(s) 578
Psp124BI GAGCTC 1 cut(s) 1115
Psp6I CCWGG 3 cut(s) 505, 937, 1180
PspFI CCCAGC 2 cut(s) 286, 1373
PspGI CCWGG 3 cut(s) 505, 937, 1180
PspN4I GGNNCC 3 cut(s) 285, 420, 720
PspPI GGNCC 1 cut(s) 283
PspXI VCTCGAGB 1 cut(s) 93
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 4 cut(s) 418, 517, 928, 1000
PsyI GACNNNGTC 1 cut(s) 740
PvuII CAGCTG 2 cut(s) 133, 290
RsaI GTAC 1 cut(s) 1269
RsaNI GTAC 1 cut(s) 1268
SacI GAGCTC 1 cut(s) 1115
SaqAI TTAA 3 cut(s) 1224, 1382, 1427
SatI GCNGC 7 cut(s) 134, 201, 291, 846, 849, 852, 1199
Sau3AI GATC 7 cut(s) 22, 322, 418, 517, 589, 928, 1000
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 2 cut(s) 700, 762
ScrFI CCNGG 3 cut(s) 507, 939, 1182
SduI GDGCHC 2 cut(s) 94, 1115
SfaNI GCATC 4 cut(s) 145, 337, 351, 1291
SfcI CTRYAG 1 cut(s) 1084
Sfr274I CTCGAG 1 cut(s) 93
SfuI TTCGAA 2 cut(s) 676, 1273
SlaI CTCGAG 1 cut(s) 93
SmlI CTYRAG 3 cut(s) 93, 248, 1108
SmoI CTYRAG 3 cut(s) 93, 248, 1108
Sse9I AATT 7 cut(s) 56, 261, 584, 635, 672, 807, 1172
SseBI AGGCCT 1 cut(s) 64
SsiI CCGC 3 cut(s) 200, 237, 849
SspMI CTAG 4 cut(s) 740, 747, 831, 884
SstI GAGCTC 1 cut(s) 1115
StuI AGGCCT 1 cut(s) 64
StyD4I CCNGG 3 cut(s) 505, 937, 1180
StyI CCWWGG 3 cut(s) 65, 606, 1074
TaaI ACNGT 2 cut(s) 399, 1279
TaiI ACGT 1 cut(s) 1414
TaqI TCGA 9 cut(s) 94, 382, 411, 437, 639, 676, 724, 981, 1273
TasI AATT 7 cut(s) 56, 261, 584, 635, 672, 807, 1172
TatI WGTACW 1 cut(s) 1267
TauI GCSGC 2 cut(s) 203, 851
TfiI GAWTC 5 cut(s) 408, 793, 901, 1214, 1314
Tru1I TTAA 3 cut(s) 1224, 1382, 1427
Tru9I TTAA 3 cut(s) 1224, 1382, 1427
TscAI CASTG 1 cut(s) 1284
TseFI GTSAC 2 cut(s) 742, 1186
TseI GCWGC 5 cut(s) 133, 290, 845, 851, 1198
Tsp45I GTSAC 2 cut(s) 742, 1186
TspDTI ATGAA 5 cut(s) 207, 634, 648, 819, 1140
TspGWI ACGGA 2 cut(s) 527, 589
TspRI CASTG 1 cut(s) 1284
Tth111I GACNNNGTC 1 cut(s) 740
XapI RAATTY 3 cut(s) 584, 635, 672
XhoI CTCGAG 1 cut(s) 93
XmnI GAANNNNTTC 2 cut(s) 672, 914
XspI CTAG 4 cut(s) 740, 747, 831, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.