Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005306

Physical Location & Seq

Genomic Coordinates Reverse (-)

13938417 .. 13942611

Gene Structure 4195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G156400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGCTTCCTCTGCCTCCCATTGATCTCAAAGATGTTCAGCAAAAGCTCGCCACGCATTTCAGGCCTTGGCAACGCTCCCTTCAGTTCTGGGCTCGGGCTGTTGATATCTACACTGGCTACAAGGTGTTTCAGCTTCGAGTGATTTTGGTGAAGGATGTGAAGAAACAAGAGGAAATGTGGGAAAGGCAGCATGAAGTTGCCGCTGAGAAGATATATGCTATGTGCTCAGACCTCGGCGGTTTCTTCCTCAAGGTTGCCCAAATCATCGGGAAGCCCGACTTGGCCCCAGCGGCATGGGTGAAAAGGCTTGTTACGTTGTGTGATCATGCTCCTGCAACCCCATTTGATGCTGTTCAACTTATGCTGGAGACAGAGTTGGGTCGAAATGTTGGTGAGGTGTTCGAAAGATTCGATGTGGATCCTCTAGGCTCTGCTTCAATTGCACAGGTTCACCGAGCAAGATTGAGAGGTGATAAGACTGATGTTGTTGTCAAGGTGCAACATCCTGGAGTTCAGGATCTAATGATGACAGATATTCGTAACTTGCAAGCTTTCGCTTTATGCATACAAAAGACAGATATCAAATTTGATCTATACTCTGTAACTAAGGAAATGGAGAAACAGATTGGATACGAATTTGACTTCATGAGGGAGGCTAATGCTATGGAAAAAATTAGACGTTTTTTGTATGAGAATAACAAAAAGAGTGTTTTGGTGCCAAGACTGATGCGAGATATAGTCACTAGGAGAGTCTTAGTTATGGAATATATCGATGGAGTTCCAATTCTGAATCTTGGTGCTGAAATTGCGAAAAGAGGAATAAATCCTGGTGGTAAGATTGCAGTGGCCGCAAAGCAGAAAATCCTCCAAAGTTTGACACTAGCATATGGACAAATGATTTTGAAGTCAGGTTTCTTCCATGCAGATCCTCATCCAGGAAATATCCTAATCTGTAAAGGCTCAGAGGTTGCGTTGCTGGACTATGGCCAAGTGAAAGATCTACCAGATGAGTTGAGACTTGGTTATGCAAGCCTTGTTCTCGCCATTGCTGATGGTGACCCTATTAGAGCATCAGAGAGCTACAGGGAGCTTGGCATAGGAACCTTAAGCAAATGTGAAAATGAACAGCATGAATTGTTAAGGTTGGCAGAGACAATGTTTGACACGAAATTGCCCCCTGGAGTGACGATGCTGCAGCCTTTTTCTGAGGAATCTTCAATTAAAAAAATTGCAGTTGAGACTTTCCCAGAAGAATTGTTTTCTGTACTTCGGACAGTGCATCTGCTGAGAGGACTTAGTGTTGGTTTGGGAATCAACTACTCATGTGCAGAACAATGGAGACCCATTGCAGAAGAAGCTTTGTTTCGTGCTGGGAGGTTAACAGGCTGTCAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

466

Amino Acids

52.4

Weight (kDa)

7.11

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24810 AT4G24810 AT4G24810 AT4G24810 AT4G24810 AT4G24810 AT5G50330 AT5G50330
fragaria_vesca	FvH4_5g07580 FvH4_5g07580 FvH4_5g07580 FvH4_5g07580
malus_domestica	MD06G1149200.v1.1 MD17G1259300.v1.1
prunus_persica	Prupe.5G156400_v2.0.a1 Prupe.5G156400_v2.0.a1 Prupe.5G156400_v2.0.a1
pyrus_communis	pycom06g13850 pycom17g26070
rosa_chinensis	RchiOBHm_Chr7g0190911
rosa_laevigata	RLG00000004486
rosa_multiflora	Rmu_sc0006903.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264210
rosa_rugosa	Rorug06G0507900
rosa_samantha	Rh7AG114700 Rh7BG117100 Rh7CG120200 Rh7DG118500
rosa_wichuraiana	Rw7G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	715
AciI	CCGC	4 cut(s)	201, 237, 290, 849
AclWI	GGATC	4 cut(s)	413, 426, 525, 920
AcoI	YGGCCR	2 cut(s)	846, 985
AcsI	RAATTY	2 cut(s)	584, 635
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	1266
AfiI	CCNNNNNNNGG	1 cut(s)	935
AflII	CTTAAG	1 cut(s)	1105
AgsI	TTSAA	4 cut(s)	356, 438, 904, 1218
AjnI	CCWGG	4 cut(s)	505, 826, 934, 1177
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	6 cut(s)	46, 133, 551, 1080, 1090, 1358
AluI	AGCT	6 cut(s)	46, 133, 551, 1080, 1090, 1358
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	5 cut(s)	362, 1009, 1145, 1232, 1333
AlwI	GGATC	4 cut(s)	413, 426, 525, 920
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	4 cut(s)	62, 282, 846, 985
ApeKI	GCWGC	3 cut(s)	187, 1192, 1195
ApoI	RAATTY	2 cut(s)	584, 635
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	6 cut(s)	160, 310, 404, 443, 482, 1067
AsuII	TTCGAA	1 cut(s)	402
AvaI	CYCGRG	1 cut(s)	93
BalI	TGGCCA	1 cut(s)	987
BamHI	GGATCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	3 cut(s)	199, 1179, 1207
BccI	CCATC	2 cut(s)	767, 1046
BciT130I	CCWGG	4 cut(s)	507, 828, 936, 1179
BciVI	GTATCC	1 cut(s)	623
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	5 cut(s)	362, 1009, 1145, 1232, 1333
BfaI	CTAG	4 cut(s)	425, 744, 881, 1396
BfmI	CTRYAG	2 cut(s)	1081, 1193
BfrI	CTTAAG	1 cut(s)	1105
BfuI	GTATCC	1 cut(s)	623
BglI	GCCNNNNNGGC	1 cut(s)	290
BglII	AGATCT	1 cut(s)	997
BisI	GCNGC	6 cut(s)	188, 201, 291, 849, 1193, 1196
BlsI	GCNGC	6 cut(s)	189, 202, 292, 850, 1194, 1197
Bme1390I	CCNGG	4 cut(s)	507, 828, 936, 1179
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	4 cut(s)	285, 420, 717, 1102
BmrFI	CCNGG	4 cut(s)	507, 828, 936, 1179
BmsI	GCATC	5 cut(s)	337, 717, 1079, 1179, 1288
BpmI	CTGGAG	3 cut(s)	386, 528, 1200
Bpu14I	TTCGAA	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	771
BsaBI	GATNNNNATC	2 cut(s)	417, 930
BsaI	GGTCTC	1 cut(s)	1333
BsaJI	CCNNGG	3 cut(s)	65, 232, 1177
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	935
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	2 cut(s)	1044, 1344
Bse8I	GATNNNNATC	2 cut(s)	417, 930
BseBI	CCWGG	4 cut(s)	507, 828, 936, 1179
BseCI	ATCGAT	1 cut(s)	771
BseDI	CCNNGG	3 cut(s)	65, 232, 1177
BseGI	GGATG	3 cut(s)	160, 502, 931
BseJI	GATNNNNATC	2 cut(s)	417, 930
BseLI	CCNNNNNNNGG	1 cut(s)	935
BseMI	GCAATG	2 cut(s)	1044, 1344
BseMII	CTCAG	5 cut(s)	195, 240, 975, 1197, 1277
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	199, 1179, 1207
BseYI	CCCAGC	2 cut(s)	286, 1370
BsgI	GTGCAG	1 cut(s)	1347
BshFI	GGCC	4 cut(s)	64, 284, 848, 987
BshNI	GGYRCC	1 cut(s)	715
BshVI	ATCGAT	1 cut(s)	771
BsiHKAI	GWGCWC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	935
BsmAI	GTCTC	5 cut(s)	362, 1009, 1145, 1232, 1333
BsnI	GGCC	4 cut(s)	64, 284, 848, 987
Bso31I	GGTCTC	1 cut(s)	1333
BsoBI	CYCGRG	1 cut(s)	93
Bsp119I	TTCGAA	1 cut(s)	402
Bsp1286I	GDGCHC	2 cut(s)	94, 227
Bsp143I	GATC	7 cut(s)	22, 322, 418, 517, 589, 925, 997
BspACI	CCGC	4 cut(s)	201, 237, 290, 849
BspANI	GGCC	4 cut(s)	64, 284, 848, 987
BspCNI	CTCAG	5 cut(s)	196, 239, 974, 1198, 1278
BspDI	ATCGAT	1 cut(s)	771
BspHI	TCATGA	1 cut(s)	645
BspLI	GGNNCC	4 cut(s)	285, 420, 717, 1102
BspMAI	CTGCAG	1 cut(s)	1197
BspPI	GGATC	4 cut(s)	413, 426, 525, 920
BspT104I	TTCGAA	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	715
BspTI	CTTAAG	1 cut(s)	1105
BspTNI	GGTCTC	1 cut(s)	1333
BsrDI	GCAATG	2 cut(s)	1044, 1344
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	65, 232, 1177
BssMI	GATC	7 cut(s)	22, 322, 418, 517, 589, 925, 997
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	4 cut(s)	507, 828, 936, 1179
Bst4CI	ACNGT	1 cut(s)	1276
BstAFI	CTTAAG	1 cut(s)	1105
BstBI	TTCGAA	1 cut(s)	402
BstC8I	GCNNGC	3 cut(s)	48, 549, 1030
BstDEI	CTNAG	8 cut(s)	204, 226, 606, 754, 961, 1206, 1286, 1295
BstEII	GGTNACC	1 cut(s)	1055
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	3 cut(s)	160, 502, 931
BstKTI	GATC	7 cut(s)	25, 325, 421, 520, 592, 928, 1000
BstMAI	GTCTC	5 cut(s)	362, 1009, 1145, 1232, 1333
BstMBI	GATC	7 cut(s)	22, 322, 418, 517, 589, 925, 997
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 52, 61, 290, 440, 806, 848, 1355, 1392
BstNI	CCWGG	4 cut(s)	507, 828, 936, 1179
BstPI	GGTNACC	1 cut(s)	1055
BstSCI	CCNGG	4 cut(s)	505, 826, 934, 1177
BstSFI	CTRYAG	2 cut(s)	1081, 1193
BstV1I	GCAGC	3 cut(s)	199, 1179, 1207
BstX2I	RGATCY	4 cut(s)	418, 517, 925, 997
BstXI	CCANNNNNNTGG	1 cut(s)	294
BstYI	RGATCY	4 cut(s)	418, 517, 925, 997
Bsu15I	ATCGAT	1 cut(s)	771
BsuI	GTATCC	1 cut(s)	623
BsuRI	GGCC	4 cut(s)	64, 284, 848, 987
BsuTUI	ATCGAT	1 cut(s)	771
BtsCI	GGATG	3 cut(s)	160, 502, 931
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	3 cut(s)	111, 849, 1281
Cac8I	GCNNGC	3 cut(s)	48, 549, 1030
CciI	TCATGA	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	283
ClaI	ATCGAT	1 cut(s)	771
Csp6I	GTAC	1 cut(s)	1265
CviAII	CATG	7 cut(s)	191, 294, 326, 646, 920, 1130, 1323
CviQI	GTAC	1 cut(s)	1265
DdeI	CTNAG	8 cut(s)	204, 226, 606, 754, 961, 1206, 1286, 1295
DpnI	GATC	7 cut(s)	24, 324, 420, 519, 591, 927, 999
DpnII	GATC	7 cut(s)	22, 322, 418, 517, 589, 925, 997
EaeI	YGGCCR	2 cut(s)	846, 985
Eco130I	CCWWGG	1 cut(s)	65
Eco147I	AGGCCT	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	1333
Eco32I	GATATC	2 cut(s)	106, 580
Eco57I	CTGAAG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	93
Eco91I	GGTNACC	1 cut(s)	1055
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoO65I	GGTNACC	1 cut(s)	1055
EcoRII	CCWGG	4 cut(s)	505, 826, 934, 1177
EcoRV	GATATC	2 cut(s)	106, 580
EcoT14I	CCWWGG	1 cut(s)	65
EcoT22I	ATGCAT	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	7 cut(s)	194, 297, 329, 649, 923, 1133, 1326
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	7 cut(s)	190, 293, 325, 645, 919, 1129, 1322
FauNDI	CATATG	1 cut(s)	886
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	6 cut(s)	188, 201, 291, 849, 1193, 1196
FokI	GGATG	3 cut(s)	167, 489, 918
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	6 cut(s)	188, 201, 291, 849, 1193, 1196
FspBI	CTAG	4 cut(s)	425, 744, 881, 1396
GluI	GCNGC	6 cut(s)	188, 201, 291, 849, 1193, 1196
GsaI	CCCAGC	2 cut(s)	290, 1374
GsuI	CTGGAG	3 cut(s)	386, 528, 1200
HaeIII	GGCC	4 cut(s)	64, 284, 848, 987
Hin1II	CATG	7 cut(s)	194, 297, 329, 649, 923, 1133, 1326
HincII	GTYRAC	1 cut(s)	1380
HindII	GTYRAC	1 cut(s)	1380
HindIII	AAGCTT	2 cut(s)	549, 1356
HinfI	GANTC	5 cut(s)	408, 750, 790, 1211, 1311
HpaI	GTTAAC	1 cut(s)	1380
HphI	GGTGA	6 cut(s)	160, 310, 404, 443, 482, 1067
Hpy166II	GTNNAC	2 cut(s)	451, 1380
Hpy188I	TCNGA	6 cut(s)	229, 789, 964, 1075, 1207, 1272
Hpy188III	TCNNGA	3 cut(s)	268, 515, 646
Hpy8I	GTNNAC	2 cut(s)	451, 1380
HpyAV	CCTTC	2 cut(s)	89, 145
HpyCH4III	ACNGT	1 cut(s)	1276
HpyCH4IV	ACGT	2 cut(s)	314, 679
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 52, 61, 290, 440, 806, 848, 1355, 1392
HpyF3I	CTNAG	8 cut(s)	204, 226, 606, 754, 961, 1206, 1286, 1295
HpySE526I	ACGT	2 cut(s)	314, 679
Hsp92II	CATG	7 cut(s)	194, 297, 329, 649, 923, 1133, 1326
Ksp22I	TGATCA	1 cut(s)	322
KspAI	GTTAAC	1 cut(s)	1380
Kzo9I	GATC	7 cut(s)	22, 322, 418, 517, 589, 925, 997
LmnI	GCTCC	3 cut(s)	80, 334, 1087
Lsp1109I	GCAGC	3 cut(s)	199, 1179, 1207
LweI	GCATC	5 cut(s)	337, 717, 1079, 1179, 1288
MaeI	CTAG	4 cut(s)	425, 744, 881, 1396
MaeII	ACGT	2 cut(s)	314, 679
MaeIII	GTNAC	6 cut(s)	310, 539, 601, 739, 1055, 1183
MalI	GATC	7 cut(s)	24, 324, 420, 519, 591, 927, 999
MboI	GATC	7 cut(s)	22, 322, 418, 517, 589, 925, 997
MboII	GAAGA	7 cut(s)	172, 220, 235, 907, 1206, 1262, 1364
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	4 cut(s)	418, 517, 925, 997
MhlI	GDGCHC	2 cut(s)	94, 227
MlsI	TGGCCA	1 cut(s)	987
MluNI	TGGCCA	1 cut(s)	987
MlyI	GAGTC	1 cut(s)	759
Mox20I	TGGCCA	1 cut(s)	987
Mph1103I	ATGCAT	1 cut(s)	566
MscI	TGGCCA	1 cut(s)	987
MseI	TTAA	4 cut(s)	1106, 1139, 1221, 1379
Msp20I	TGGCCA	1 cut(s)	987
MspA1I	CMGCKG	2 cut(s)	203, 290
MspCI	CTTAAG	1 cut(s)	1105
MspR9I	CCNGG	4 cut(s)	507, 828, 936, 1179
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	4 cut(s)	507, 828, 936, 1179
MwoI	GCNNNNNNNGC	9 cut(s)	10, 52, 61, 290, 440, 806, 848, 1355, 1392
NdeI	CATATG	1 cut(s)	886
NdeII	GATC	7 cut(s)	22, 322, 418, 517, 589, 925, 997
NlaIII	CATG	7 cut(s)	194, 297, 329, 649, 923, 1133, 1326
NlaIV	GGNNCC	4 cut(s)	285, 420, 717, 1102
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	3 cut(s)	739, 1055, 1183
NsiI	ATGCAT	1 cut(s)	566
NspV	TTCGAA	1 cut(s)	402
PagI	TCATGA	1 cut(s)	645
PceI	AGGCCT	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 408
PfeI	GAWTC	4 cut(s)	408, 790, 1211, 1311
PfoI	TCCNGGA	2 cut(s)	505, 934
PkrI	GCNGC	6 cut(s)	189, 202, 292, 850, 1194, 1197
PleI	GAGTC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	758
Psp6I	CCWGG	4 cut(s)	505, 826, 934, 1177
PspEI	GGTNACC	1 cut(s)	1055
PspFI	CCCAGC	2 cut(s)	286, 1370
PspGI	CCWGG	4 cut(s)	505, 826, 934, 1177
PspN4I	GGNNCC	4 cut(s)	285, 420, 717, 1102
PspPI	GGNCC	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	1197
PsuI	RGATCY	4 cut(s)	418, 517, 925, 997
RsaI	GTAC	1 cut(s)	1266
RsaNI	GTAC	1 cut(s)	1265
SaqAI	TTAA	4 cut(s)	1106, 1139, 1221, 1379
SatI	GCNGC	6 cut(s)	188, 201, 291, 849, 1193, 1196
Sau3AI	GATC	7 cut(s)	22, 322, 418, 517, 589, 925, 997
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	759
ScrFI	CCNGG	4 cut(s)	507, 828, 936, 1179
SduI	GDGCHC	2 cut(s)	94, 227
SfaNI	GCATC	5 cut(s)	337, 717, 1079, 1179, 1288
SfcI	CTRYAG	2 cut(s)	1081, 1193
SfuI	TTCGAA	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	248, 1105
SmoI	CTYRAG	2 cut(s)	248, 1105
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	4 cut(s)	201, 237, 290, 849
SspMI	CTAG	4 cut(s)	425, 744, 881, 1396
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	4 cut(s)	505, 826, 934, 1177
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	1276
TaiI	ACGT	2 cut(s)	317, 682
TaqI	TCGA	5 cut(s)	136, 382, 402, 411, 771
TatI	WGTACW	1 cut(s)	1264
TauI	GCSGC	3 cut(s)	203, 293, 851
TfiI	GAWTC	4 cut(s)	408, 790, 1211, 1311
Tru1I	TTAA	4 cut(s)	1106, 1139, 1221, 1379
Tru9I	TTAA	4 cut(s)	1106, 1139, 1221, 1379
TscAI	CASTG	3 cut(s)	118, 849, 1281
TseFI	GTSAC	3 cut(s)	739, 1055, 1183
TseI	GCWGC	3 cut(s)	187, 1192, 1195
Tsp45I	GTSAC	3 cut(s)	739, 1055, 1183
TspDTI	ATGAA	4 cut(s)	207, 634, 1137, 1146
TspRI	CASTG	3 cut(s)	118, 849, 1281
Vha464I	CTTAAG	1 cut(s)	1105
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	2 cut(s)	584, 635
XspI	CTAG	4 cut(s)	425, 744, 881, 1396
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.