AT4G24910

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014552
Physical Location & Seq
Reverse (-)
12817727 .. 12819206
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24910.1

Sequence Viewer

Length: 948 bp
ATGCCTCCGCAATTTCATCAATCTTCCCTTTCTATTCTCAATCCTCTACTCAGGTTCTCACCTCCTTCCTCCCCTGATAATCCCAAACACCAGAGGTTATCAACGATTAAGATGCCTAAATTCACTGTACGTAAGCTCATACCTCTTCTTATTTTCGTTCTATCAAGCCTCTCTGTTCTCCGACTCCTCCGGATTTCATACAAGTCTTCTTCTAAGTCCCAGTCCTCATCTTCAACCACATTTCGCTTGAGTCCAGCTGATTCCAGTCAGCAGCTCAGGGCTAATGAGGGCCCAACCGCTCTCATGGAAAAGGAACTGAAGCTCTTATCAGATACCGTTACTCGTAGATCCCCATGCAACATTCTTGTTTTCGGGTTTGCACCTCAATACCTCATGTTATCTTCAATCAACACTAGAGGTATTACCGTCATTCTGGAAGATGAACCTGCAAAGATAATGATACCAAAAGCTGAAGTAAATCCAAACAACACAAGAATCTACAGCTTAAAGTACCATCAGATGGAAGTAAGAAATGCTTACAATCTGCTTCAACATGCTCGAGCTAATCCCGCATGTGCACCAAATATGAATAATCAACATCAAGGCTCATCAGACTGCAAACTGGAACTGAGGGATTTGCCACAGCAGGTACACAATACCAAATGGGATGTGATAGTTGTTGATGGCCCCCGTGGAGATGACTTAGAGACACCAGGTAGGATGGGGAGTATATATACTGCAGCTGTGTTAGCAAGAAAAGGAAGTAGCAACTCAACAACAGATGTTTTCGTGCATGATGTGCACAGGACAGCTGAAAAGTGGCTCTCCTGGGAGTTCTTGTGCCAGGAGAATCTGGTTTCAGCTAAAGGAACCTTCTGGAAGTTTAGGATCAAGCGTCAATCAAATGCATCCAGGTTTTGCTCACCAGAAACAGTCATCATCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

315

Amino Acids

35.55

Weight (kDa)

9.82

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 104 - 295 6.4e-75 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24910
fragaria_vesca FvH4_5g08380
malus_domestica MD06G1141300.v1.1 MD14G1156500.v1.1
prunus_persica Prupe.5G150600_v2.0.a1
pyrus_communis pycom06g13130 pycom14g13010
rosa_chinensis RchiOBHm_Chr7g0190071
rosa_laevigata RLG00000004567
rosa_multiflora Rmu_sc0004886.1_g000008
rosa_roxburghii Rroxscaffold_3G00264910
rosa_rugosa Rorug06G0502200
rosa_samantha Rh7AG107800 Rh7BG110100 Rh7CG112300 Rh7DG110700
rosa_wichuraiana Rw7G009300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 454, 637
AccB7I CCANNNNNTGG 1 cut(s) 520
AccBSI CCGCTC 1 cut(s) 299
AccIII TCCGGA 1 cut(s) 189
AciI CCGC 3 cut(s) 8, 297, 570
AclWI GGATC 2 cut(s) 342, 896
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 338, 492
AfaI GTAC 3 cut(s) 129, 512, 651
AfiI CCNNNNNNNGG 1 cut(s) 520
AgsI TTSAA 3 cut(s) 234, 405, 551
AjnI CCWGG 4 cut(s) 712, 827, 843, 911
Alw21I GWGCWC 2 cut(s) 580, 804
Alw26I GTCTC 1 cut(s) 701
Alw44I GTGCAC 2 cut(s) 576, 800
AlwI GGATC 2 cut(s) 342, 896
Ama87I CYCGRG 1 cut(s) 558
Aor13HI TCCGGA 1 cut(s) 189
AoxI GGCC 2 cut(s) 289, 685
ApaI GGGCCC 1 cut(s) 293
ApaLI GTGCAC 2 cut(s) 576, 800
ApeKI GCWGC 2 cut(s) 271, 740
ApoI RAATTY 1 cut(s) 119
AspS9I GGNCC 3 cut(s) 289, 290, 686
AsuHPI GGTGA 2 cut(s) 51, 915
AvaI CYCGRG 1 cut(s) 558
BaeGI GKGCMC 3 cut(s) 293, 580, 804
BanII GRGCYC 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 2 cut(s) 580, 804
BbvI GCAGC 2 cut(s) 283, 752
BccI CCATC 4 cut(s) 514, 522, 677, 715
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BciT130I CCWGG 4 cut(s) 714, 829, 845, 913
BcoDI GTCTC 1 cut(s) 701
BfaI CTAG 1 cut(s) 414
BfmI CTRYAG 2 cut(s) 499, 738
BfuAI ACCTGC 2 cut(s) 454, 637
BisI GCNGC 2 cut(s) 272, 741
BlsI GCNGC 2 cut(s) 273, 742
Bme1390I CCNGG 4 cut(s) 714, 829, 845, 913
BmeT110I CYCGRG 1 cut(s) 558
BmgT120I GGNCC 3 cut(s) 289, 290, 686
BmiI GGNNCC 3 cut(s) 291, 688, 871
BmrFI CCNGG 4 cut(s) 714, 829, 845, 913
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 2 cut(s) 102, 917
BmuI ACTGGG 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 268
BsaAI YACGTR 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 691, 828
BsaWI WCCGGW 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 824, 854
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse1I ACTGG 3 cut(s) 220, 264, 627
BseAI TCCGGA 1 cut(s) 189
BseBI CCWGG 4 cut(s) 714, 829, 845, 913
BseDI CCNNGG 2 cut(s) 691, 828
BseGI GGATG 3 cut(s) 673, 726, 908
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMII CTCAG 3 cut(s) 64, 289, 620
BseNI ACTGG 3 cut(s) 220, 264, 627
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 3 cut(s) 293, 580, 804
BseXI GCAGC 2 cut(s) 283, 752
BshFI GGCC 2 cut(s) 291, 687
BsiHKAI GWGCWC 2 cut(s) 580, 804
BsiHKCI CYCGRG 1 cut(s) 558
BsiSI CCGG 1 cut(s) 190
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 520
BsmAI GTCTC 1 cut(s) 701
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 2 cut(s) 291, 687
BsoBI CYCGRG 1 cut(s) 558
Bsp120I GGGCCC 1 cut(s) 289
Bsp1286I GDGCHC 3 cut(s) 293, 580, 804
Bsp13I TCCGGA 1 cut(s) 189
Bsp143I GATC 2 cut(s) 347, 888
BspACI CCGC 3 cut(s) 8, 297, 570
BspANI GGCC 2 cut(s) 291, 687
BspCNI CTCAG 3 cut(s) 63, 288, 621
BspEI TCCGGA 1 cut(s) 189
BspLI GGNNCC 3 cut(s) 291, 688, 871
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 2 cut(s) 454, 637
BspPI GGATC 2 cut(s) 342, 896
BsrBI CCGCTC 1 cut(s) 299
BsrI ACTGG 3 cut(s) 220, 264, 627
BssECI CCNNGG 2 cut(s) 691, 828
BssMI GATC 2 cut(s) 347, 888
Bst2UI CCWGG 4 cut(s) 714, 829, 845, 913
Bst4CI ACNGT 4 cut(s) 127, 337, 427, 934
Bst6I CTCTTC 1 cut(s) 150
BstAPI GCANNNNNTGC 1 cut(s) 799
BstBAI YACGTR 1 cut(s) 131
BstDEI CTNAG 5 cut(s) 50, 213, 275, 629, 703
BstDSI CCRYGG 1 cut(s) 691
BstF5I GGATG 3 cut(s) 673, 726, 908
BstKTI GATC 2 cut(s) 350, 891
BstMAI GTCTC 1 cut(s) 701
BstMBI GATC 2 cut(s) 347, 888
BstMWI GCNNNNNNNGC 3 cut(s) 569, 749, 799
BstNI CCWGG 4 cut(s) 714, 829, 845, 913
BstNSI RCATGY 2 cut(s) 557, 576
BstSCI CCNGG 4 cut(s) 712, 827, 843, 911
BstSFI CTRYAG 2 cut(s) 499, 738
BstSLI GKGCMC 3 cut(s) 293, 580, 804
BstSNI TACGTA 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 283, 752
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuRI GGCC 2 cut(s) 291, 687
BtgI CCRYGG 1 cut(s) 691
BtsCI GGATG 3 cut(s) 673, 726, 908
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 2 cut(s) 454, 637
Cfr13I GGNCC 3 cut(s) 289, 290, 686
CseI GACGC 1 cut(s) 884
CsiI ACCWGGT 1 cut(s) 712
Csp6I GTAC 3 cut(s) 128, 511, 650
CviAII CATG 6 cut(s) 304, 354, 394, 554, 573, 794
CviQI GTAC 3 cut(s) 128, 511, 650
DdeI CTNAG 5 cut(s) 50, 213, 275, 629, 703
DpnI GATC 2 cut(s) 349, 890
DpnII GATC 2 cut(s) 347, 888
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco105I TACGTA 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 293
Eco57I CTGAAG 2 cut(s) 338, 492
Eco88I CYCGRG 1 cut(s) 558
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 4 cut(s) 712, 827, 843, 911
EcoT22I ATGCAT 1 cut(s) 910
EcoT38I GRGCYC 1 cut(s) 293
FaeI CATG 6 cut(s) 307, 357, 397, 557, 576, 797
FalI AAGNNNNNCTT 2 cut(s) 520, 552
FaqI GGGAC 1 cut(s) 202
FatI CATG 6 cut(s) 303, 353, 393, 553, 572, 793
FauI CCCGC 1 cut(s) 577
Fnu4HI GCNGC 2 cut(s) 272, 741
FokI GGATG 3 cut(s) 680, 733, 895
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 272, 741
FspBI CTAG 1 cut(s) 414
GluI GCNGC 2 cut(s) 272, 741
HaeIII GGCC 2 cut(s) 291, 687
HapII CCGG 1 cut(s) 190
HgaI GACGC 1 cut(s) 884
Hin1II CATG 6 cut(s) 307, 357, 397, 557, 576, 797
HinfI GANTC 5 cut(s) 183, 250, 260, 495, 850
HpaII CCGG 1 cut(s) 190
HphI GGTGA 2 cut(s) 51, 915
Hpy166II GTNNAC 3 cut(s) 578, 652, 802
Hpy188I TCNGA 5 cut(s) 182, 331, 519, 613, 944
Hpy188III TCNNGA 3 cut(s) 190, 434, 877
Hpy8I GTNNAC 3 cut(s) 578, 652, 802
HpyAV CCTTC 2 cut(s) 75, 883
HpyCH4III ACNGT 4 cut(s) 127, 337, 427, 934
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 9 cut(s) 357, 380, 449, 578, 618, 740, 793, 802, 908
HpyF10VI GCNNNNNNNGC 3 cut(s) 569, 749, 799
HpyF3I CTNAG 5 cut(s) 50, 213, 275, 629, 703
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 6 cut(s) 307, 357, 397, 557, 576, 797
Kpn2I TCCGGA 1 cut(s) 189
Kzo9I GATC 2 cut(s) 347, 888
Lsp1109I GCAGC 2 cut(s) 283, 752
LweI GCATC 2 cut(s) 102, 917
MabI ACCWGGT 1 cut(s) 712
MaeI CTAG 1 cut(s) 414
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 337
MalI GATC 2 cut(s) 349, 890
MbiI CCGCTC 1 cut(s) 299
MboI GATC 2 cut(s) 347, 888
MboII GAAGA 7 cut(s) 15, 137, 198, 201, 222, 393, 449
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 3 cut(s) 293, 580, 804
MluCI AATT 2 cut(s) 11, 119
MlyI GAGTC 2 cut(s) 177, 259
MmeI TCCRAC 1 cut(s) 205
Mph1103I ATGCAT 1 cut(s) 910
MroI TCCGGA 1 cut(s) 189
MseI TTAA 2 cut(s) 108, 506
MspA1I CMGCKG 3 cut(s) 257, 743, 812
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 4 cut(s) 714, 829, 845, 913
MvaI CCWGG 4 cut(s) 714, 829, 845, 913
MwoI GCNNNNNNNGC 3 cut(s) 569, 749, 799
NdeII GATC 2 cut(s) 347, 888
NlaIII CATG 6 cut(s) 307, 357, 397, 557, 576, 797
NlaIV GGNNCC 3 cut(s) 291, 688, 871
NsiI ATGCAT 1 cut(s) 910
NspI RCATGY 2 cut(s) 557, 576
PaeR7I CTCGAG 1 cut(s) 558
PfeI GAWTC 3 cut(s) 260, 495, 850
PflMI CCANNNNNTGG 1 cut(s) 520
PkrI GCNGC 2 cut(s) 273, 742
PleI GAGTC 2 cut(s) 177, 258
PpsI GAGTC 2 cut(s) 177, 258
Ppu21I YACGTR 1 cut(s) 131
Psp6I CCWGG 4 cut(s) 712, 827, 843, 911
PspGI CCWGG 4 cut(s) 712, 827, 843, 911
PspN4I GGNNCC 3 cut(s) 291, 688, 871
PspOMI GGGCCC 1 cut(s) 289
PspPI GGNCC 3 cut(s) 289, 290, 686
PspXI VCTCGAGB 1 cut(s) 558
PstI CTGCAG 1 cut(s) 742
PsuI RGATCY 1 cut(s) 347
PvuII CAGCTG 3 cut(s) 257, 743, 812
RsaI GTAC 3 cut(s) 129, 512, 651
RsaNI GTAC 3 cut(s) 128, 511, 650
SaqAI TTAA 2 cut(s) 108, 506
SatI GCNGC 2 cut(s) 272, 741
Sau3AI GATC 2 cut(s) 347, 888
Sau96I GGNCC 3 cut(s) 289, 290, 686
SchI GAGTC 2 cut(s) 177, 259
ScrFI CCNGG 4 cut(s) 714, 829, 845, 913
SduI GDGCHC 3 cut(s) 293, 580, 804
SexAI ACCWGGT 1 cut(s) 712
SfaNI GCATC 2 cut(s) 102, 917
SfcI CTRYAG 2 cut(s) 499, 738
Sfr274I CTCGAG 1 cut(s) 558
SlaI CTCGAG 1 cut(s) 558
SmlI CTYRAG 2 cut(s) 247, 558
SmoI CTYRAG 2 cut(s) 247, 558
SnaBI TACGTA 1 cut(s) 131
Sse9I AATT 2 cut(s) 11, 119
SsiI CCGC 3 cut(s) 8, 297, 570
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 4 cut(s) 712, 827, 843, 911
TaaI ACNGT 4 cut(s) 127, 337, 427, 934
TaiI ACGT 1 cut(s) 133
TaqI TCGA 1 cut(s) 559
TasI AATT 2 cut(s) 11, 119
TfiI GAWTC 3 cut(s) 260, 495, 850
Tru1I TTAA 2 cut(s) 108, 506
Tru9I TTAA 2 cut(s) 108, 506
TscAI CASTG 1 cut(s) 130
TseI GCWGC 2 cut(s) 271, 740
TspDTI ATGAA 4 cut(s) 5, 186, 456, 602
TspRI CASTG 1 cut(s) 130
Van91I CCANNNNNTGG 1 cut(s) 520
VneI GTGCAC 2 cut(s) 576, 800
XapI RAATTY 1 cut(s) 119
XceI RCATGY 2 cut(s) 557, 576
XhoI CTCGAG 1 cut(s) 558
XspI CTAG 1 cut(s) 414
Zsp2I ATGCAT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.