Rh7BG110100

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014552
Physical Location & Seq
Forward (+)
8306700 .. 8307668
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG110100.1

Sequence Viewer

Length: 969 bp
ATGCCCCCAGAAGTGCCCCATTATCGATCTTCTGTAACTCCTCTAGTACGGTTCTCTCCTTCTATCTCACCTGAAGCCCAACTAAATCAACTGTACAGACACAAGTATTGGAGAGGAGAGAAAGGAGAGACAAATATGAACTTTGCCAGAAAGACACTCATCCCTTTTCTTGTTTTAATCCTTTCAATCATTTCTGTACTCAGACTTATTAGAGTAGCAATAACTACATCTTCTTCTTCTTCACATCCATTGCCTGCTTTACCTCCTCTTGGAGACTCATGTTCCAATCCTCCCTCATGCACTAAATTTCAATCAGAGAGAAGTGCCTCCATTAACGCCACCCGCCTGAGGAAAAAGGAATACCAACTTCTGTCAAATCTCATTTCCCAGAGAGCCCCTTGCAACCTCCTCATTTTTGGGCTGGAACCTCAGTATCTATCTCTCTCATCAATCAATGCAGGCGGCACTACCATCTTTCTGGAGGATGACGTTAACAAGATAAGCACCATGACAACAGATTCCAACACCACCAGAATCTACAGGGTGGACTACGAGGTACCTGCAAAAGAGGCCTACAACCTGCTGAAGCATGCAAGGGAAAACCCAGTCTGTGCACCTAGCTCAAAACAGCTTCAAGTATCAAAATGTCAGCTTGCGCTGAAAAATTTGCCACAAGAAGTTTATGAGCTTAAATGGGATGTGGTGGTGGTGGATGGACCAAGCGGGAATACGCCAGAGGCACCAGGCAGGATGGCAGCTATATATACTGCAAGTATGTTAGCAAGAAATGGGAATATTACGGATGTAGTAGTGCATGATGTGGATCGAACAATTGAGAAGTGGTTTTCCTGGGAATTTCTGTGTGATGAGAACTTGGTTTCTTCAAAAGGGAAACTATGGAACTTTAGGATCGTGGGTCACACAAATTCTTCAAAATTTTGCCTTCCCAAAGAAGTTACAATAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

322

Amino Acids

36.05

Weight (kDa)

8.99

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 120 - 302 4e-69 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24910
fragaria_vesca FvH4_5g08380
malus_domestica MD06G1141300.v1.1 MD14G1156500.v1.1
prunus_persica Prupe.5G150600_v2.0.a1
pyrus_communis pycom06g13130 pycom14g13010
rosa_chinensis RchiOBHm_Chr7g0190071
rosa_laevigata RLG00000004567
rosa_multiflora Rmu_sc0004886.1_g000008
rosa_roxburghii Rroxscaffold_3G00264910
rosa_rugosa Rorug06G0502200
rosa_samantha Rh7AG107800 Rh7BG110100 Rh7CG112300 Rh7DG110700
rosa_wichuraiana Rw7G009300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 568, 588
Acc65I GGTACC 1 cut(s) 556
AccB1I GGYRCC 2 cut(s) 556, 739
AciI CCGC 3 cut(s) 343, 462, 723
AclWI GGATC 2 cut(s) 831, 917
AcsI RAATTY 5 cut(s) 305, 664, 854, 925, 935
AcuI CTGAAG 2 cut(s) 93, 605
AfaI GTAC 4 cut(s) 48, 95, 198, 558
AfiI CCNNNNNNNGG 2 cut(s) 269, 348
AgsI TTSAA 5 cut(s) 186, 311, 635, 885, 933
AjnI CCWGG 2 cut(s) 742, 848
AluBI AGCT 5 cut(s) 621, 631, 652, 688, 758
AluI AGCT 5 cut(s) 621, 631, 652, 688, 758
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 2 cut(s) 122, 267
Alw44I GTGCAC 1 cut(s) 612
AlwI GGATC 2 cut(s) 831, 917
AoxI GGCC 1 cut(s) 570
ApaLI GTGCAC 1 cut(s) 612
ApeKI GCWGC 1 cut(s) 755
ApoI RAATTY 5 cut(s) 305, 664, 854, 925, 935
Asp718I GGTACC 1 cut(s) 556
AspLEI GCGC 1 cut(s) 658
AspS9I GGNCC 1 cut(s) 716
AsuHPI GGTGA 1 cut(s) 60
AvaII GGWCC 1 cut(s) 716
AxyI CCTNAGG 1 cut(s) 347
BaeGI GKGCMC 2 cut(s) 18, 616
BaeI ACNNNNGTAYC 2 cut(s) 416, 449
BanI GGYRCC 2 cut(s) 556, 739
BanII GRGCYC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 1 cut(s) 767
BccI CCATC 3 cut(s) 479, 707, 745
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BciT130I CCWGG 2 cut(s) 744, 850
BcoDI GTCTC 2 cut(s) 122, 267
BfaI CTAG 2 cut(s) 44, 618
BfmI CTRYAG 1 cut(s) 538
BfuAI ACCTGC 2 cut(s) 568, 588
BisI GCNGC 2 cut(s) 463, 756
BlsI GCNGC 2 cut(s) 464, 757
Bme1390I CCNGG 2 cut(s) 744, 850
Bme18I GGWCC 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 716
BmiI GGNNCC 3 cut(s) 426, 558, 741
BmrFI CCNGG 2 cut(s) 744, 850
BmrI ACTGGG 1 cut(s) 599
BmuI ACTGGG 1 cut(s) 599
BpmI CTGGAG 1 cut(s) 500
Bsa29I ATCGAT 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 822
BsaJI CCNNGG 1 cut(s) 849
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 348
Bse1I ACTGG 1 cut(s) 605
Bse21I CCTNAGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 248
Bse8I GATNNNNATC 1 cut(s) 822
BseBI CCWGG 2 cut(s) 744, 850
BseCI ATCGAT 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 849
BseGI GGATG 7 cut(s) 159, 244, 490, 703, 718, 756, 808
BseJI GATNNNNATC 1 cut(s) 822
BseLI CCNNNNNNNGG 2 cut(s) 269, 348
BseMI GCAATG 1 cut(s) 248
BseMII CTCAG 3 cut(s) 214, 338, 443
BseNI ACTGG 1 cut(s) 605
BseRI GAGGAG 4 cut(s) 30, 129, 255, 398
BseSI GKGCMC 2 cut(s) 18, 616
BseXI GCAGC 1 cut(s) 767
BshFI GGCC 1 cut(s) 572
BshNI GGYRCC 2 cut(s) 556, 739
BshVI ATCGAT 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 616
BslI CCNNNNNNNGG 2 cut(s) 269, 348
BsmAI GTCTC 2 cut(s) 122, 267
BsnI GGCC 1 cut(s) 572
Bsp1286I GDGCHC 3 cut(s) 18, 397, 616
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 3 cut(s) 26, 823, 909
BspACI CCGC 3 cut(s) 343, 462, 723
BspANI GGCC 1 cut(s) 572
BspCNI CTCAG 3 cut(s) 213, 339, 442
BspDI ATCGAT 1 cut(s) 25
BspLI GGNNCC 3 cut(s) 426, 558, 741
BspMI ACCTGC 2 cut(s) 568, 588
BspPI GGATC 2 cut(s) 831, 917
BspT107I GGYRCC 2 cut(s) 556, 739
BsrDI GCAATG 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 605
BssECI CCNNGG 1 cut(s) 849
BssMI GATC 3 cut(s) 26, 823, 909
Bst2UI CCWGG 2 cut(s) 744, 850
Bst4CI ACNGT 2 cut(s) 51, 93
BstAUI TGTACA 1 cut(s) 93
BstC8I GCNNGC 4 cut(s) 255, 460, 591, 654
BstDEI CTNAG 3 cut(s) 200, 347, 429
BstF5I GGATG 7 cut(s) 159, 244, 490, 703, 718, 756, 808
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 3 cut(s) 29, 826, 912
BstMAI GTCTC 2 cut(s) 122, 267
BstMBI GATC 3 cut(s) 26, 823, 909
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstNI CCWGG 2 cut(s) 744, 850
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 2 cut(s) 742, 848
BstSFI CTRYAG 1 cut(s) 538
BstSLI GKGCMC 2 cut(s) 18, 616
BstV1I GCAGC 1 cut(s) 767
BstXI CCANNNNNNTGG 1 cut(s) 478
Bsu15I ATCGAT 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 347
BsuRI GGCC 1 cut(s) 572
BsuTUI ATCGAT 1 cut(s) 25
BtsCI GGATG 7 cut(s) 159, 244, 490, 703, 718, 756, 808
BveI ACCTGC 2 cut(s) 568, 588
Cac8I GCNNGC 4 cut(s) 255, 460, 591, 654
CfoI GCGC 1 cut(s) 658
Cfr13I GGNCC 1 cut(s) 716
ClaI ATCGAT 1 cut(s) 25
Csp6I GTAC 4 cut(s) 47, 94, 197, 557
CviAII CATG 5 cut(s) 279, 297, 508, 590, 815
CviJI RGCY 9 cut(s) 77, 395, 421, 572, 621, 631, 652, 688, 758
CviKI_1 RGCY 9 cut(s) 77, 395, 421, 572, 621, 631, 652, 688, 758
CviQI GTAC 4 cut(s) 47, 94, 197, 557
DdeI CTNAG 3 cut(s) 200, 347, 429
DpnI GATC 3 cut(s) 28, 825, 911
DpnII GATC 3 cut(s) 26, 823, 909
Eco147I AGGCCT 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 716
Eco57I CTGAAG 2 cut(s) 93, 605
Eco81I CCTNAGG 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 742, 848
EcoT38I GRGCYC 1 cut(s) 397
FaeI CATG 5 cut(s) 282, 300, 511, 593, 818
FatI CATG 5 cut(s) 278, 296, 507, 589, 814
FauI CCCGC 2 cut(s) 350, 716
Fnu4HI GCNGC 2 cut(s) 463, 756
FokI GGATG 7 cut(s) 146, 231, 497, 710, 725, 763, 815
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 2 cut(s) 463, 756
FspBI CTAG 2 cut(s) 44, 618
GlaI GCGC 1 cut(s) 657
GluI GCNGC 2 cut(s) 463, 756
GsuI CTGGAG 1 cut(s) 500
HaeIII GGCC 1 cut(s) 572
HhaI GCGC 1 cut(s) 658
Hin1II CATG 5 cut(s) 282, 300, 511, 593, 818
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 3 cut(s) 275, 518, 534
HpaI GTTAAC 1 cut(s) 493
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 3 cut(s) 493, 547, 614
Hpy188I TCNGA 2 cut(s) 203, 316
Hpy188III TCNNGA 1 cut(s) 479
Hpy8I GTNNAC 3 cut(s) 493, 547, 614
HpyAV CCTTC 2 cut(s) 69, 953
HpyCH4III ACNGT 2 cut(s) 51, 93
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 8 cut(s) 300, 402, 458, 563, 593, 614, 770, 814
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 3 cut(s) 200, 347, 429
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 5 cut(s) 282, 300, 511, 593, 818
HspAI GCGC 1 cut(s) 656
KpnI GGTACC 1 cut(s) 560
KspAI GTTAAC 1 cut(s) 493
Kzo9I GATC 3 cut(s) 26, 823, 909
Lsp1109I GCAGC 1 cut(s) 767
MaeI CTAG 2 cut(s) 44, 618
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 3 cut(s) 34, 917, 955
MalI GATC 3 cut(s) 28, 825, 911
MboI GATC 3 cut(s) 26, 823, 909
MboII GAAGA 7 cut(s) 21, 222, 225, 228, 231, 873, 921
MfeI CAATTG 1 cut(s) 831
MhlI GDGCHC 3 cut(s) 18, 397, 616
MluCI AATT 6 cut(s) 305, 664, 831, 854, 925, 935
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 546
MseI TTAA 4 cut(s) 176, 333, 492, 690
MspR9I CCNGG 2 cut(s) 744, 850
MunI CAATTG 1 cut(s) 831
MvaI CCWGG 2 cut(s) 744, 850
MwoI GCNNNNNNNGC 1 cut(s) 569
NdeII GATC 3 cut(s) 26, 823, 909
NlaIII CATG 5 cut(s) 282, 300, 511, 593, 818
NlaIV GGNNCC 3 cut(s) 426, 558, 741
NmuCI GTSAC 1 cut(s) 917
NspI RCATGY 1 cut(s) 593
PaeI GCATGC 1 cut(s) 593
PceI AGGCCT 1 cut(s) 572
PfeI GAWTC 2 cut(s) 518, 534
PkrI GCNGC 2 cut(s) 464, 757
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Psp6I CCWGG 2 cut(s) 742, 848
PspGI CCWGG 2 cut(s) 742, 848
PspN4I GGNNCC 3 cut(s) 426, 558, 741
PspPI GGNCC 1 cut(s) 716
RsaI GTAC 4 cut(s) 48, 95, 198, 558
RsaNI GTAC 4 cut(s) 47, 94, 197, 557
SaqAI TTAA 4 cut(s) 176, 333, 492, 690
SatI GCNGC 2 cut(s) 463, 756
Sau3AI GATC 3 cut(s) 26, 823, 909
Sau96I GGNCC 1 cut(s) 716
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 744, 850
SduI GDGCHC 3 cut(s) 18, 397, 616
SfcI CTRYAG 1 cut(s) 538
SinI GGWCC 1 cut(s) 716
SphI GCATGC 1 cut(s) 593
Sse9I AATT 6 cut(s) 305, 664, 831, 854, 925, 935
SseBI AGGCCT 1 cut(s) 572
SsiI CCGC 3 cut(s) 343, 462, 723
SspI AATATT 1 cut(s) 796
SspMI CTAG 2 cut(s) 44, 618
StuI AGGCCT 1 cut(s) 572
StyD4I CCNGG 2 cut(s) 742, 848
TaaI ACNGT 2 cut(s) 51, 93
TaiI ACGT 1 cut(s) 492
TaqI TCGA 2 cut(s) 25, 826
TasI AATT 6 cut(s) 305, 664, 831, 854, 925, 935
TatI WGTACW 2 cut(s) 93, 196
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 2 cut(s) 518, 534
Tru1I TTAA 4 cut(s) 176, 333, 492, 690
Tru9I TTAA 4 cut(s) 176, 333, 492, 690
TseFI GTSAC 1 cut(s) 917
TseI GCWGC 1 cut(s) 755
Tsp45I GTSAC 1 cut(s) 917
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 1 cut(s) 815
VneI GTGCAC 1 cut(s) 612
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 5 cut(s) 305, 664, 854, 925, 935
XceI RCATGY 1 cut(s) 593
XspI CTAG 2 cut(s) 44, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.