RLG00000004567

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014552
Physical Location & Seq
Reverse (-)
60349575 .. 60350543
969 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004567

Sequence Viewer

Length: 969 bp
ATGCCCCCAGAAGTGCCTCATTATCGATCTTCTGTAACTCCTCCAGTACGGTTCTCTCCTTCTATCTCACCTGAAGCACAACTAAATCAACTGTACAGACACAAGTATTGGAGAGGAGAGAGAGGAGAGACAAATATGAACTTTGCCAGAAAGAAACTCATCCCTTTTCTTGTTTTAATCCTTTCAATCATTTCCGTACTCAGACTTATTAGAGTAGCAATAACTACATCTTCTTCTTCTTCACATCCATTGCCTGCTTTACCTCCTCTTGGAGACTCATGTTCCAATCCTCCCTCATGCACTAAATTTCAATCAGAGAGAAGTGCCTCCATTAACGCCACGCGCCTGCGGAAAAAGGAATACCAACTTCTGTCAAATCTCATTTCCCAGAGAGCCCCTTGCAACCTCCTCATTTTTGGGCTGGAACCTCAGTATCTATCTCTCTCATCAATCAATGCAGGCGGCACTACCATCTTTCTGGAGGATGACGTTAACAAGATAAGCACTATGACAACAGATTCCAACACCACCAGAATCTACAGAGTGGACTACGAGGTACCTGCAAAAGAGGCCTACAACCTGCTGAAGCATGCAAGGGAAAACCCAGTCTGCGCACCTAGCTCAAAACAGCTTCAAGTATCAAAATGTCAGCTTGCACTGAAAAATTTGCCACAAGAAGTTTATGAGCTCAAATGGGATGTGGTGGTGGTGGATGGACCAAGCGGGAATAGGCCGGAGGCACCAGGCAGGATGGCAGCTATATATACTGCAAGTATGTTAGCAAGAAATGGGAATATTACGGATGTAGTAGTGCATGATGTGGATCGAACAATTGAGAAGTGGTTTTCCTGGGAATTTCTGTGTGATGAGAACTTGGTTTCTTCAAAAGGGAAACTATGGAACTTTAGGATCATGGGTCACACAAATTCTTCAAAATTTTGCCTTCCCAAAGAAGTTACAATAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

323

Amino Acids

36.18

Weight (kDa)

9.19

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 120 - 302 6.2e-69 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24910
fragaria_vesca FvH4_5g08380
malus_domestica MD06G1141300.v1.1 MD14G1156500.v1.1
prunus_persica Prupe.5G150600_v2.0.a1
pyrus_communis pycom06g13130 pycom14g13010
rosa_chinensis RchiOBHm_Chr7g0190071
rosa_laevigata RLG00000004567
rosa_multiflora Rmu_sc0004886.1_g000008
rosa_roxburghii Rroxscaffold_3G00264910
rosa_rugosa Rorug06G0502200
rosa_samantha Rh7AG107800 Rh7BG110100 Rh7CG112300 Rh7DG110700
rosa_wichuraiana Rw7G009300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 613
Acc36I ACCTGC 2 cut(s) 568, 588
Acc65I GGTACC 1 cut(s) 556
AccB1I GGYRCC 2 cut(s) 556, 739
AccII CGCG 1 cut(s) 343
AciI CCGC 3 cut(s) 349, 462, 723
AclWI GGATC 2 cut(s) 831, 917
AcsI RAATTY 5 cut(s) 305, 664, 854, 925, 935
AcuI CTGAAG 2 cut(s) 93, 605
AfaI GTAC 4 cut(s) 48, 95, 198, 558
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 5 cut(s) 186, 311, 635, 885, 933
AjnI CCWGG 2 cut(s) 742, 848
AluBI AGCT 5 cut(s) 621, 631, 652, 688, 758
AluI AGCT 5 cut(s) 621, 631, 652, 688, 758
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 2 cut(s) 122, 267
AlwI GGATC 2 cut(s) 831, 917
AoxI GGCC 2 cut(s) 570, 731
ApeKI GCWGC 1 cut(s) 755
ApoI RAATTY 5 cut(s) 305, 664, 854, 925, 935
Asp718I GGTACC 1 cut(s) 556
AspLEI GCGC 2 cut(s) 345, 614
AspS9I GGNCC 1 cut(s) 716
AsuHPI GGTGA 1 cut(s) 60
AvaII GGWCC 1 cut(s) 716
BaeI ACNNNNGTAYC 2 cut(s) 416, 449
BanI GGYRCC 2 cut(s) 556, 739
BanII GRGCYC 2 cut(s) 397, 690
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 1 cut(s) 767
BccI CCATC 3 cut(s) 479, 707, 745
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BciT130I CCWGG 2 cut(s) 744, 850
BcoDI GTCTC 2 cut(s) 122, 267
BfaI CTAG 1 cut(s) 618
BfmI CTRYAG 1 cut(s) 538
BfuAI ACCTGC 2 cut(s) 568, 588
BisI GCNGC 2 cut(s) 463, 756
BlsI GCNGC 2 cut(s) 464, 757
Bme1390I CCNGG 2 cut(s) 744, 850
Bme18I GGWCC 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 716
BmiI GGNNCC 3 cut(s) 426, 558, 741
BmrFI CCNGG 2 cut(s) 744, 850
BmrI ACTGGG 1 cut(s) 599
BmuI ACTGGG 1 cut(s) 599
BpmI CTGGAG 2 cut(s) 27, 500
Bsa29I ATCGAT 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 822
BsaJI CCNNGG 1 cut(s) 849
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 2 cut(s) 44, 605
Bse3DI GCAATG 1 cut(s) 248
Bse8I GATNNNNATC 1 cut(s) 822
BseBI CCWGG 2 cut(s) 744, 850
BseCI ATCGAT 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 849
BseGI GGATG 7 cut(s) 159, 244, 490, 703, 718, 756, 808
BseJI GATNNNNATC 1 cut(s) 822
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMI GCAATG 1 cut(s) 248
BseMII CTCAG 2 cut(s) 214, 443
BseNI ACTGG 2 cut(s) 44, 605
BseRI GAGGAG 5 cut(s) 30, 129, 138, 255, 398
BseXI GCAGC 1 cut(s) 767
Bsh1236I CGCG 1 cut(s) 343
BshFI GGCC 2 cut(s) 572, 733
BshNI GGYRCC 2 cut(s) 556, 739
BshVI ATCGAT 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 690
BsiSI CCGG 1 cut(s) 734
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 2 cut(s) 122, 267
BsnI GGCC 2 cut(s) 572, 733
Bsp1286I GDGCHC 2 cut(s) 397, 690
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 3 cut(s) 26, 823, 909
BspACI CCGC 3 cut(s) 349, 462, 723
BspANI GGCC 2 cut(s) 572, 733
BspCNI CTCAG 2 cut(s) 213, 442
BspDI ATCGAT 1 cut(s) 25
BspFNI CGCG 1 cut(s) 343
BspLI GGNNCC 3 cut(s) 426, 558, 741
BspMI ACCTGC 2 cut(s) 568, 588
BspPI GGATC 2 cut(s) 831, 917
BspT107I GGYRCC 2 cut(s) 556, 739
BsrDI GCAATG 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 2 cut(s) 44, 605
BssECI CCNNGG 1 cut(s) 849
BssMI GATC 3 cut(s) 26, 823, 909
Bst2UI CCWGG 2 cut(s) 744, 850
Bst4CI ACNGT 2 cut(s) 51, 93
BstAUI TGTACA 1 cut(s) 93
BstC8I GCNNGC 5 cut(s) 255, 347, 460, 591, 654
BstDEI CTNAG 2 cut(s) 200, 429
BstF5I GGATG 7 cut(s) 159, 244, 490, 703, 718, 756, 808
BstFNI CGCG 1 cut(s) 343
BstHHI GCGC 2 cut(s) 345, 614
BstKTI GATC 3 cut(s) 29, 826, 912
BstMAI GTCTC 2 cut(s) 122, 267
BstMBI GATC 3 cut(s) 26, 823, 909
BstMWI GCNNNNNNNGC 2 cut(s) 569, 618
BstNI CCWGG 2 cut(s) 744, 850
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 2 cut(s) 742, 848
BstSFI CTRYAG 1 cut(s) 538
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 767
BstXI CCANNNNNNTGG 1 cut(s) 478
Bsu15I ATCGAT 1 cut(s) 25
BsuRI GGCC 2 cut(s) 572, 733
BsuTUI ATCGAT 1 cut(s) 25
BtsCI GGATG 7 cut(s) 159, 244, 490, 703, 718, 756, 808
BtsIMutI CAGTG 1 cut(s) 656
BveI ACCTGC 2 cut(s) 568, 588
Cac8I GCNNGC 5 cut(s) 255, 347, 460, 591, 654
CfoI GCGC 2 cut(s) 345, 614
Cfr13I GGNCC 1 cut(s) 716
ClaI ATCGAT 1 cut(s) 25
Csp6I GTAC 4 cut(s) 47, 94, 197, 557
CviAII CATG 5 cut(s) 279, 297, 590, 815, 913
CviJI RGCY 9 cut(s) 395, 421, 572, 621, 631, 652, 688, 733, 758
CviKI_1 RGCY 9 cut(s) 395, 421, 572, 621, 631, 652, 688, 733, 758
CviQI GTAC 4 cut(s) 47, 94, 197, 557
DdeI CTNAG 2 cut(s) 200, 429
DpnI GATC 3 cut(s) 28, 825, 911
DpnII GATC 3 cut(s) 26, 823, 909
Ecl136II GAGCTC 1 cut(s) 688
Eco147I AGGCCT 1 cut(s) 572
Eco24I GRGCYC 2 cut(s) 397, 690
Eco47I GGWCC 1 cut(s) 716
Eco53kI GAGCTC 1 cut(s) 688
Eco57I CTGAAG 2 cut(s) 93, 605
EcoICRI GAGCTC 1 cut(s) 688
EcoRII CCWGG 2 cut(s) 742, 848
EcoT38I GRGCYC 2 cut(s) 397, 690
FaeI CATG 5 cut(s) 282, 300, 593, 818, 916
FatI CATG 5 cut(s) 278, 296, 589, 814, 912
FauI CCCGC 1 cut(s) 716
Fnu4HI GCNGC 2 cut(s) 463, 756
FokI GGATG 7 cut(s) 146, 231, 497, 710, 725, 763, 815
FriOI GRGCYC 2 cut(s) 397, 690
Fsp4HI GCNGC 2 cut(s) 463, 756
FspBI CTAG 1 cut(s) 618
FspI TGCGCA 1 cut(s) 613
GlaI GCGC 2 cut(s) 344, 613
GluI GCNGC 2 cut(s) 463, 756
GsuI CTGGAG 2 cut(s) 27, 500
HaeIII GGCC 2 cut(s) 572, 733
HapII CCGG 1 cut(s) 734
HhaI GCGC 2 cut(s) 345, 614
Hin1II CATG 5 cut(s) 282, 300, 593, 818, 916
Hin6I GCGC 2 cut(s) 343, 612
HinP1I GCGC 2 cut(s) 343, 612
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 3 cut(s) 275, 518, 534
HpaI GTTAAC 1 cut(s) 493
HpaII CCGG 1 cut(s) 734
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 493, 547
Hpy188I TCNGA 2 cut(s) 203, 316
Hpy188III TCNNGA 1 cut(s) 479
Hpy8I GTNNAC 2 cut(s) 493, 547
HpyAV CCTTC 2 cut(s) 69, 953
HpyCH4III ACNGT 2 cut(s) 51, 93
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 8 cut(s) 300, 402, 458, 563, 593, 656, 770, 814
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 618
HpyF3I CTNAG 2 cut(s) 200, 429
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 5 cut(s) 282, 300, 593, 818, 916
HspAI GCGC 2 cut(s) 343, 612
KpnI GGTACC 1 cut(s) 560
KspAI GTTAAC 1 cut(s) 493
Kzo9I GATC 3 cut(s) 26, 823, 909
Lsp1109I GCAGC 1 cut(s) 767
MaeI CTAG 1 cut(s) 618
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 3 cut(s) 34, 917, 955
MalI GATC 3 cut(s) 28, 825, 911
MboI GATC 3 cut(s) 26, 823, 909
MboII GAAGA 7 cut(s) 21, 222, 225, 228, 231, 873, 921
MfeI CAATTG 1 cut(s) 831
MhlI GDGCHC 2 cut(s) 397, 690
MluCI AATT 6 cut(s) 305, 664, 831, 854, 925, 935
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 546
MseI TTAA 3 cut(s) 176, 333, 492
MspI CCGG 1 cut(s) 734
MspR9I CCNGG 2 cut(s) 744, 850
MunI CAATTG 1 cut(s) 831
MvaI CCWGG 2 cut(s) 744, 850
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 2 cut(s) 569, 618
NdeII GATC 3 cut(s) 26, 823, 909
NlaIII CATG 5 cut(s) 282, 300, 593, 818, 916
NlaIV GGNNCC 3 cut(s) 426, 558, 741
NmuCI GTSAC 1 cut(s) 917
NsbI TGCGCA 1 cut(s) 613
NspI RCATGY 1 cut(s) 593
PaeI GCATGC 1 cut(s) 593
PceI AGGCCT 1 cut(s) 572
PfeI GAWTC 2 cut(s) 518, 534
PkrI GCNGC 2 cut(s) 464, 757
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Psp124BI GAGCTC 1 cut(s) 690
Psp6I CCWGG 2 cut(s) 742, 848
PspGI CCWGG 2 cut(s) 742, 848
PspN4I GGNNCC 3 cut(s) 426, 558, 741
PspPI GGNCC 1 cut(s) 716
RsaI GTAC 4 cut(s) 48, 95, 198, 558
RsaNI GTAC 4 cut(s) 47, 94, 197, 557
SacI GAGCTC 1 cut(s) 690
SaqAI TTAA 3 cut(s) 176, 333, 492
SatI GCNGC 2 cut(s) 463, 756
Sau3AI GATC 3 cut(s) 26, 823, 909
Sau96I GGNCC 1 cut(s) 716
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 744, 850
SduI GDGCHC 2 cut(s) 397, 690
SfcI CTRYAG 1 cut(s) 538
SinI GGWCC 1 cut(s) 716
SphI GCATGC 1 cut(s) 593
Sse9I AATT 6 cut(s) 305, 664, 831, 854, 925, 935
SseBI AGGCCT 1 cut(s) 572
SsiI CCGC 3 cut(s) 349, 462, 723
SspI AATATT 1 cut(s) 796
SspMI CTAG 1 cut(s) 618
SstI GAGCTC 1 cut(s) 690
StuI AGGCCT 1 cut(s) 572
StyD4I CCNGG 2 cut(s) 742, 848
TaaI ACNGT 2 cut(s) 51, 93
TaiI ACGT 1 cut(s) 492
TaqI TCGA 2 cut(s) 25, 826
TasI AATT 6 cut(s) 305, 664, 831, 854, 925, 935
TatI WGTACW 1 cut(s) 93
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 2 cut(s) 518, 534
Tru1I TTAA 3 cut(s) 176, 333, 492
Tru9I TTAA 3 cut(s) 176, 333, 492
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 1 cut(s) 917
TseI GCWGC 1 cut(s) 755
Tsp45I GTSAC 1 cut(s) 917
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 2 cut(s) 184, 815
TspRI CASTG 1 cut(s) 663
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 5 cut(s) 305, 664, 854, 925, 935
XceI RCATGY 1 cut(s) 593
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.