pycom06g13130

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0014552
Physical Location & Seq
Forward (+)
18186784 .. 18187722
939 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13130.1

Sequence Viewer

Length: 939 bp
ATGCCACCAGAAGTGCCTCATTTTCGCTCTATCGTAACTCCTCTGGTTCGGTTCTCTTCTCCTGTCTCACCAGAAGCACAAGAGTGCCAGCCTCATAGACACAAGCAATCGAGAGGATCAAAAGCCATGAACTTTTCCAGAACCAAACTCTTCCCTTTCCTTGTTTTGATCCTTTCGATCGTTTCGGTGCTCAGACTAGTTAGAATTGCTGTAACTACACCTCCTCCTCCTCCTACTCTTGGAAAGACATGTTCTTTCTCTTCCACATGCACCAAGTTTCGTGCAGAAACAAACGCCTCTGCCAACACCTCCGGCCTCATGAAAAAGGAATACCAACTGCTGTTGAATCTCATTTCGCAGAAAGCTCCCTGCAACCTCCTCATATTCGGGCTTGAACCTCAGTATATGTCTCTGTCATCAATCAATGCAGGCGGCATCACTGTCTTTCTAGAGGATGATCAAAAGAAGATAAGCACACTGAAACCAAATTCCAACACCACCAGAGTCTACAAGGTGGACTACCAGATACCTGCAAAAGAGGCGTACAGGCTGCTCAAGCACGCAAGGGAACACCCAGACTGCGCACCCAGCTCAAAACTGCTTCAACGATCAAAATGTCAACTTGCATTGAAAAATTTACCACAAGAAGTTTACCAGCTTAAATGGGATGTGGTGGTAGTGGATGGACCGAGCGGGAATGCACCAGAGGAACCAGGTAGGATGTCAGCAATCTATTCTGCTAGTATGATAGCAAGAAATGCAAACATTACGCATGTGGTAGTGCATGATGTAGACCGAATGATCGAGAAGTGGTTTTCCTGGGAGTTTCTGTGTGATGAGAACTTAGTTTCTTCCAAGGGGAGATTATGGAACTTTAGGATCACAAGCCAATCAAATTCTACAAATTTTTGCCCTGCCAAAGCAATTAGGATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

313

Amino Acids

35.03

Weight (kDa)

9.51

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 110 - 292 2.9e-67 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24910
fragaria_vesca FvH4_5g08380
malus_domestica MD06G1141300.v1.1 MD14G1156500.v1.1
prunus_persica Prupe.5G150600_v2.0.a1
pyrus_communis pycom06g13130 pycom14g13010
rosa_chinensis RchiOBHm_Chr7g0190071
rosa_laevigata RLG00000004567
rosa_multiflora Rmu_sc0004886.1_g000008
rosa_roxburghii Rroxscaffold_3G00264910
rosa_rugosa Rorug06G0502200
rosa_samantha Rh7AG107800 Rh7BG110100 Rh7CG112300 Rh7DG110700
rosa_wichuraiana Rw7G009300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 583
Acc36I ACCTGC 1 cut(s) 538
AccBSI CCGCTC 1 cut(s) 693
AccI GTMKAC 2 cut(s) 507, 792
AciI CCGC 2 cut(s) 432, 693
AclWI GGATC 3 cut(s) 124, 163, 887
AcsI RAATTY 4 cut(s) 487, 634, 895, 904
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 248
AgsI TTSAA 4 cut(s) 346, 395, 605, 631
AhlI ACTAGT 1 cut(s) 196
AjnI CCWGG 2 cut(s) 712, 818
AleI CACNNNNGTG 1 cut(s) 82
AluBI AGCT 3 cut(s) 365, 591, 658
AluI AGCT 3 cut(s) 365, 591, 658
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 70, 414
AlwI GGATC 3 cut(s) 124, 163, 887
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 550
ApoI RAATTY 4 cut(s) 487, 634, 895, 904
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 1 cut(s) 686
AsuHPI GGTGA 1 cut(s) 60
AvaII GGWCC 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 537
BccI CCATC 1 cut(s) 677
BciT130I CCWGG 2 cut(s) 714, 820
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 2 cut(s) 70, 414
BcuI ACTAGT 1 cut(s) 196
BfaI CTAG 3 cut(s) 197, 449, 741
BfuAI ACCTGC 1 cut(s) 538
BisI GCNGC 2 cut(s) 433, 551
BlsI GCNGC 2 cut(s) 434, 552
Bme1390I CCNGG 2 cut(s) 714, 820
Bme18I GGWCC 1 cut(s) 686
BmgT120I GGNCC 1 cut(s) 686
BmiI GGNNCC 1 cut(s) 711
BmrFI CCNGG 2 cut(s) 714, 820
BmsI GCATC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 539
BsaJI CCNNGG 2 cut(s) 819, 855
BsaXI ACNNNNNCTCC 6 cut(s) 205, 208, 235, 238, 815, 845
Bsc4I CCNNNNNNNGG 1 cut(s) 239
BseBI CCWGG 2 cut(s) 714, 820
BseDI CCNNGG 2 cut(s) 819, 855
BseGI GGATG 4 cut(s) 460, 673, 688, 726
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMII CTCAG 2 cut(s) 205, 413
BseRI GAGGAG 5 cut(s) 30, 213, 216, 219, 368
BseXI GCAGC 1 cut(s) 537
BseYI CCCAGC 1 cut(s) 587
BsgI GTGCAG 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 315
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 2 cut(s) 70, 414
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 7 cut(s) 116, 168, 177, 457, 608, 801, 879
BspACI CCGC 2 cut(s) 432, 693
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 2 cut(s) 204, 412
BspHI TCATGA 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 711
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 3 cut(s) 124, 163, 887
BsrBI CCGCTC 1 cut(s) 693
BssECI CCNNGG 2 cut(s) 819, 855
BssMI GATC 7 cut(s) 116, 168, 177, 457, 608, 801, 879
BssT1I CCWWGG 1 cut(s) 855
Bst2UI CCWGG 2 cut(s) 714, 820
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 3 cut(s) 61, 155, 265
BstAPI GCANNNNNTGC 1 cut(s) 758
BstC8I GCNNGC 3 cut(s) 89, 430, 561
BstDEI CTNAG 3 cut(s) 191, 399, 844
BstF5I GGATG 4 cut(s) 460, 673, 688, 726
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 7 cut(s) 119, 171, 180, 460, 611, 804, 882
BstMAI GTCTC 2 cut(s) 70, 414
BstMBI GATC 7 cut(s) 116, 168, 177, 457, 608, 801, 879
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 4 cut(s) 539, 556, 588, 758
BstNI CCWGG 2 cut(s) 714, 820
BstNSI RCATGY 3 cut(s) 252, 270, 776
BstSCI CCNGG 2 cut(s) 712, 818
BstV1I GCAGC 1 cut(s) 537
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 4 cut(s) 460, 673, 688, 726
BtsIMutI CAGTG 2 cut(s) 438, 476
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 3 cut(s) 89, 430, 561
CciI TCATGA 1 cut(s) 318
CfoI GCGC 1 cut(s) 584
Cfr13I GGNCC 1 cut(s) 686
CsiI ACCWGGT 1 cut(s) 712
Csp6I GTAC 1 cut(s) 544
CviAII CATG 6 cut(s) 127, 249, 267, 319, 773, 785
CviJI RGCY 9 cut(s) 91, 125, 315, 365, 391, 550, 591, 658, 888
CviKI_1 RGCY 9 cut(s) 91, 125, 315, 365, 391, 550, 591, 658, 888
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 3 cut(s) 191, 399, 844
DpnI GATC 7 cut(s) 118, 170, 179, 459, 610, 803, 881
DpnII GATC 7 cut(s) 116, 168, 177, 457, 608, 801, 879
Eam1104I CTCTTC 3 cut(s) 61, 155, 265
EarI CTCTTC 3 cut(s) 61, 155, 265
Eco130I CCWWGG 1 cut(s) 855
Eco47I GGWCC 1 cut(s) 686
EcoRII CCWGG 2 cut(s) 712, 818
EcoT14I CCWWGG 1 cut(s) 855
ErhI CCWWGG 1 cut(s) 855
FaeI CATG 6 cut(s) 130, 252, 270, 322, 776, 788
FatI CATG 6 cut(s) 126, 248, 266, 318, 772, 784
FauI CCCGC 1 cut(s) 686
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 2 cut(s) 507, 792
Fnu4HI GCNGC 2 cut(s) 433, 551
FokI GGATG 4 cut(s) 467, 680, 695, 733
Fsp4HI GCNGC 2 cut(s) 433, 551
FspBI CTAG 3 cut(s) 197, 449, 741
FspI TGCGCA 1 cut(s) 583
GlaI GCGC 1 cut(s) 583
GluI GCNGC 2 cut(s) 433, 551
GsaI CCCAGC 1 cut(s) 591
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 312
HhaI GCGC 1 cut(s) 584
Hin1II CATG 6 cut(s) 130, 252, 270, 322, 776, 788
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 1 cut(s) 620
HindII GTYRAC 1 cut(s) 620
HinfI GANTC 2 cut(s) 346, 504
HpaII CCGG 1 cut(s) 312
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 5 cut(s) 508, 517, 620, 652, 793
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 5 cut(s) 111, 138, 319, 449, 805
Hpy8I GTNNAC 5 cut(s) 508, 517, 620, 652, 793
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 9 cut(s) 270, 284, 372, 428, 533, 626, 701, 761, 784
HpyF10VI GCNNNNNNNGC 4 cut(s) 539, 556, 588, 758
HpyF3I CTNAG 3 cut(s) 191, 399, 844
Hsp92II CATG 6 cut(s) 130, 252, 270, 322, 776, 788
HspAI GCGC 1 cut(s) 582
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 7 cut(s) 116, 168, 177, 457, 608, 801, 879
LmnI GCTCC 1 cut(s) 370
Lsp1109I GCAGC 1 cut(s) 537
LweI GCATC 1 cut(s) 444
MabI ACCWGGT 1 cut(s) 712
MaeI CTAG 3 cut(s) 197, 449, 741
MaeIII GTNAC 2 cut(s) 34, 211
MalI GATC 7 cut(s) 118, 170, 179, 459, 610, 803, 881
MbiI CCGCTC 1 cut(s) 693
MboI GATC 7 cut(s) 116, 168, 177, 457, 608, 801, 879
MboII GAAGA 5 cut(s) 48, 142, 252, 478, 843
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 6 cut(s) 204, 487, 634, 895, 904, 924
MlyI GAGTC 1 cut(s) 513
MmeI TCCRAC 1 cut(s) 516
MseI TTAA 1 cut(s) 660
MslI CAYNNNNRTG 1 cut(s) 82
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 2 cut(s) 714, 820
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 2 cut(s) 714, 820
MwoI GCNNNNNNNGC 4 cut(s) 539, 556, 588, 758
NdeII GATC 7 cut(s) 116, 168, 177, 457, 608, 801, 879
NlaIII CATG 6 cut(s) 130, 252, 270, 322, 776, 788
NlaIV GGNNCC 1 cut(s) 711
NsbI TGCGCA 1 cut(s) 583
NspI RCATGY 3 cut(s) 252, 270, 776
OliI CACNNNNGTG 1 cut(s) 82
PagI TCATGA 1 cut(s) 318
PciI ACATGT 1 cut(s) 248
PctI GAATGC 1 cut(s) 703
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 2 cut(s) 434, 552
Ple19I CGATCG 1 cut(s) 180
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
PscI ACATGT 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 712, 818
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 2 cut(s) 712, 818
PspN4I GGNNCC 1 cut(s) 711
PspPI GGNCC 1 cut(s) 686
PvuI CGATCG 1 cut(s) 180
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
RseI CAYNNNNRTG 1 cut(s) 82
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 2 cut(s) 433, 551
Sau3AI GATC 7 cut(s) 116, 168, 177, 457, 608, 801, 879
Sau96I GGNCC 1 cut(s) 686
SchI GAGTC 1 cut(s) 513
ScrFI CCNGG 2 cut(s) 714, 820
SduI GDGCHC 1 cut(s) 192
SexAI ACCWGGT 1 cut(s) 712
SfaNI GCATC 1 cut(s) 444
SinI GGWCC 1 cut(s) 686
SmiMI CAYNNNNRTG 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
SpeI ACTAGT 1 cut(s) 196
Sse9I AATT 6 cut(s) 204, 487, 634, 895, 904, 924
SsiI CCGC 2 cut(s) 432, 693
SspMI CTAG 3 cut(s) 197, 449, 741
StyD4I CCNGG 2 cut(s) 712, 818
StyI CCWWGG 1 cut(s) 855
TaaI ACNGT 1 cut(s) 442
TaqI TCGA 3 cut(s) 110, 176, 804
TaqII GACCGA 2 cut(s) 703, 810
TasI AATT 6 cut(s) 204, 487, 634, 895, 904, 924
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 2 cut(s) 445, 483
TseI GCWGC 1 cut(s) 550
TspDTI ATGAA 2 cut(s) 143, 335
TspRI CASTG 2 cut(s) 445, 483
VpaK11BI GGWCC 1 cut(s) 686
XapI RAATTY 4 cut(s) 487, 634, 895, 904
XbaI TCTAGA 1 cut(s) 448
XceI RCATGY 3 cut(s) 252, 270, 776
XmiI GTMKAC 2 cut(s) 507, 792
XspI CTAG 3 cut(s) 197, 449, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.