Prupe.5G150600_v2.0.a1

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014552
Physical Location & Seq
Forward (+)
13662723 .. 13663691
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G150600.1

Sequence Viewer

Length: 969 bp
ATGCCCCCAGAAGTGCCTCATTGTCGCTCTCCTGTAACTCCTCAAGTTCGATTCTCTTCCCCGGTGTCACTTAAGGCACAACTAGATCAACCTTATCAGCACAAGCACTGCAGAGGATCTAAAAACATGAACTTTAGCAGAAAGAAACTCATCCCTTTCCTTGTTTTGATCCTTTCAATCATTTCTGTACTCAGACTTCTCAGAATTGCAATAACAACTTCATCTCCTTCCCCTCCATTTCCTGCCTCGACTGCCTTGCCTCCTACTGCTCTTGGAGATGCATGTTCTCCTCTCTCCACATGCTCTAAGTTTCCATCAGAAAAAAAGGTGTCTGCCAACGTCACCGGCCTCAGGGAAAAGGAATACCGCCTTCTGTCAAATCTCATTAGGCAGAAAGCTCCCTGCAACCTCCTCATTTTCGGGATTGATCCTCAGTATGTATCTCTCTCATCAATCAATGCAGGTGGCACCACCATCTTTCTAGAGGACGATCACAACAAGATAAGCACACTGAAGACTAATTCCAACACCACCAGAGTCTACCAGGTGGACTACCAGATACCTGCAAAAGAGGCTTACAAACTGCTCAAGCATGCAAGGGAAAACCCAGATTGTGCACCTAGCTCAAAACTCCAACTATCCAAATGTCAACTTGCATTGAAAAACTTACCACAAGAAGTTTATGAGCTTAAATGGGATGTGGTGGTGGTGGACGGACCAAGCGGCAGTACACCAGACGAACCGGGGAGGATGGCAGCAATCTATACTGCTAGTATGATGGCAAGAAATGGGAATATTACAGATGTGGTAGTGCATGATGTAGATCGAATGATTGAGAAGTGGTTTTCCTGGGAGTTTCTGTGTGATGAGAACTTAGTTTCTTCGAAAGGGAGATTATGGAACTTTAGGATCACAGGCCAATCAAACTCTACAAATTTTTGCCCTGCCAAAACCATTACGATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

323

Amino Acids

35.84

Weight (kDa)

9.15

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24910
fragaria_vesca FvH4_5g08380
malus_domestica MD06G1141300.v1.1 MD14G1156500.v1.1
prunus_persica Prupe.5G150600_v2.0.a1
pyrus_communis pycom06g13130 pycom14g13010
rosa_chinensis RchiOBHm_Chr7g0190071
rosa_laevigata RLG00000004567
rosa_multiflora Rmu_sc0004886.1_g000008
rosa_roxburghii Rroxscaffold_3G00264910
rosa_rugosa Rorug06G0502200
rosa_samantha Rh7AG107800 Rh7BG110100 Rh7CG112300 Rh7DG110700
rosa_wichuraiana Rw7G009300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 452
Acc36I ACCTGC 2 cut(s) 452, 571
AccB1I GGYRCC 1 cut(s) 467
AccI GTMKAC 1 cut(s) 540
AciI CCGC 2 cut(s) 367, 723
AclWI GGATC 4 cut(s) 124, 163, 422, 917
AcsI RAATTY 1 cut(s) 934
AcuI CTGAAG 1 cut(s) 533
AfaI GTAC 2 cut(s) 189, 730
AfiI CCNNNNNNNGG 1 cut(s) 351
AflII CTTAAG 1 cut(s) 71
AgsI TTSAA 2 cut(s) 177, 661
AjnI CCWGG 2 cut(s) 543, 848
AluBI AGCT 3 cut(s) 398, 624, 688
AluI AGCT 3 cut(s) 398, 624, 688
Alw21I GWGCWC 1 cut(s) 619
Alw44I GTGCAC 1 cut(s) 615
AlwI GGATC 4 cut(s) 124, 163, 422, 917
AoxI GGCC 2 cut(s) 346, 916
ApaLI GTGCAC 1 cut(s) 615
ApeKI GCWGC 1 cut(s) 755
ApoI RAATTY 1 cut(s) 934
AspS9I GGNCC 1 cut(s) 716
AsuC2I CCSGG 2 cut(s) 62, 744
AsuHPI GGTGA 1 cut(s) 334
AsuII TTCGAA 1 cut(s) 884
AvaII GGWCC 1 cut(s) 716
AxyI CCTNAGG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 619
BanI GGYRCC 1 cut(s) 467
BarI GAAGNNNNNNTAC 2 cut(s) 180, 212
BbsI GAAGAC 1 cut(s) 521
Bbv12I GWGCWC 1 cut(s) 619
BbvI GCAGC 1 cut(s) 767
BccI CCATC 4 cut(s) 322, 482, 745, 772
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 2 cut(s) 545, 850
BcnI CCSGG 2 cut(s) 62, 744
BfaI CTAG 4 cut(s) 83, 482, 621, 771
BfmI CTRYAG 1 cut(s) 109
BfrI CTTAAG 1 cut(s) 71
BfuAI ACCTGC 2 cut(s) 452, 571
BisI GCNGC 2 cut(s) 724, 756
BlsI GCNGC 2 cut(s) 725, 757
Bme1390I CCNGG 4 cut(s) 62, 545, 744, 850
Bme18I GGWCC 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 716
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 4 cut(s) 62, 545, 744, 850
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 521
Bpu14I TTCGAA 1 cut(s) 884
BpuEI CTTGAG 2 cut(s) 27, 572
BpuMI CCSGG 2 cut(s) 62, 744
BsaBI GATNNNNATC 1 cut(s) 822
BsaJI CCNNGG 3 cut(s) 60, 743, 849
BsaXI ACNNNNNCTCC 4 cut(s) 208, 238, 845, 875
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse118I RCCGGY 1 cut(s) 344
Bse21I CCTNAGG 1 cut(s) 350
Bse8I GATNNNNATC 1 cut(s) 822
BseBI CCWGG 2 cut(s) 545, 850
BseDI CCNNGG 3 cut(s) 60, 743, 849
BseGI GGATG 3 cut(s) 150, 703, 756
BseJI GATNNNNATC 1 cut(s) 822
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMII CTCAG 4 cut(s) 205, 214, 364, 446
BseRI GAGGAG 3 cut(s) 30, 279, 401
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 1 cut(s) 767
BshFI GGCC 2 cut(s) 348, 918
BshNI GGYRCC 1 cut(s) 467
BsiHKAI GWGCWC 1 cut(s) 619
BsiSI CCGG 3 cut(s) 62, 345, 743
BslI CCNNNNNNNGG 1 cut(s) 351
BsnI GGCC 2 cut(s) 348, 918
Bsp119I TTCGAA 1 cut(s) 884
Bsp1286I GDGCHC 1 cut(s) 619
Bsp143I GATC 7 cut(s) 85, 116, 168, 427, 490, 823, 909
BspACI CCGC 2 cut(s) 367, 723
BspANI GGCC 2 cut(s) 348, 918
BspCNI CTCAG 4 cut(s) 204, 213, 363, 445
BspLI GGNNCC 1 cut(s) 469
BspMAI CTGCAG 1 cut(s) 113
BspMI ACCTGC 2 cut(s) 452, 571
BspPI GGATC 4 cut(s) 124, 163, 422, 917
BspT104I TTCGAA 1 cut(s) 884
BspT107I GGYRCC 1 cut(s) 467
BspTI CTTAAG 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 3 cut(s) 60, 743, 849
BssMI GATC 7 cut(s) 85, 116, 168, 427, 490, 823, 909
Bst2UI CCWGG 2 cut(s) 545, 850
Bst6I CTCTTC 1 cut(s) 61
BstAFI CTTAAG 1 cut(s) 71
BstBI TTCGAA 1 cut(s) 884
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 6 cut(s) 191, 200, 306, 350, 432, 874
BstF5I GGATG 3 cut(s) 150, 703, 756
BstKTI GATC 7 cut(s) 88, 119, 171, 430, 493, 826, 912
BstMBI GATC 7 cut(s) 85, 116, 168, 427, 490, 823, 909
BstMWI GCNNNNNNNGC 2 cut(s) 251, 572
BstNI CCWGG 2 cut(s) 545, 850
BstNSI RCATGY 3 cut(s) 285, 303, 596
BstSCI CCNGG 4 cut(s) 60, 543, 742, 848
BstSFI CTRYAG 1 cut(s) 109
BstSLI GKGCMC 1 cut(s) 619
BstV1I GCAGC 1 cut(s) 767
BstV2I GAAGAC 1 cut(s) 521
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 2 cut(s) 348, 918
BtsCI GGATG 3 cut(s) 150, 703, 756
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 106, 509
BveI ACCTGC 2 cut(s) 452, 571
Cac8I GCNNGC 1 cut(s) 594
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 716
CsiI ACCWGGT 1 cut(s) 543
Csp6I GTAC 2 cut(s) 188, 729
CspCI CAANNNNNGTGG 2 cut(s) 445, 480
CviAII CATG 5 cut(s) 127, 282, 300, 593, 815
CviJI RGCY 6 cut(s) 348, 398, 575, 624, 688, 918
CviKI_1 RGCY 6 cut(s) 348, 398, 575, 624, 688, 918
CviQI GTAC 2 cut(s) 188, 729
DdeI CTNAG 6 cut(s) 191, 200, 306, 350, 432, 874
DpnI GATC 7 cut(s) 87, 118, 170, 429, 492, 825, 911
DpnII GATC 7 cut(s) 85, 116, 168, 427, 490, 823, 909
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 716
Eco57I CTGAAG 1 cut(s) 533
Eco81I CCTNAGG 1 cut(s) 350
EcoRII CCWGG 2 cut(s) 543, 848
EcoT22I ATGCAT 1 cut(s) 283
FaeI CATG 5 cut(s) 130, 285, 303, 596, 818
FatI CATG 5 cut(s) 126, 281, 299, 592, 814
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 2 cut(s) 724, 756
FokI GGATG 3 cut(s) 137, 710, 763
Fsp4HI GCNGC 2 cut(s) 724, 756
FspBI CTAG 4 cut(s) 83, 482, 621, 771
GluI GCNGC 2 cut(s) 724, 756
HaeIII GGCC 2 cut(s) 348, 918
HapII CCGG 3 cut(s) 62, 345, 743
Hin1II CATG 5 cut(s) 130, 285, 303, 596, 818
HincII GTYRAC 1 cut(s) 650
HindII GTYRAC 1 cut(s) 650
HinfI GANTC 2 cut(s) 51, 537
HpaII CCGG 3 cut(s) 62, 345, 743
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 6 cut(s) 541, 550, 617, 650, 712, 731
Hpy188I TCNGA 3 cut(s) 194, 203, 319
Hpy188III TCNNGA 2 cut(s) 421, 482
Hpy8I GTNNAC 6 cut(s) 541, 550, 617, 650, 712, 731
HpyAV CCTTC 2 cut(s) 237, 380
HpyCH4IV ACGT 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 572
HpyF3I CTNAG 6 cut(s) 191, 200, 306, 350, 432, 874
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 5 cut(s) 130, 285, 303, 596, 818
Kzo9I GATC 7 cut(s) 85, 116, 168, 427, 490, 823, 909
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 1 cut(s) 767
LweI GCATC 1 cut(s) 268
MabI ACCWGGT 1 cut(s) 543
MaeI CTAG 4 cut(s) 83, 482, 621, 771
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 3 cut(s) 34, 66, 340
MalI GATC 7 cut(s) 87, 118, 170, 429, 492, 825, 911
MboI GATC 7 cut(s) 85, 116, 168, 427, 490, 823, 909
MboII GAAGA 3 cut(s) 48, 526, 873
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 619
MluCI AATT 3 cut(s) 204, 520, 934
MlyI GAGTC 1 cut(s) 546
MmeI TCCRAC 2 cut(s) 549, 658
Mph1103I ATGCAT 1 cut(s) 283
MseI TTAA 2 cut(s) 72, 690
MspCI CTTAAG 1 cut(s) 71
MspI CCGG 3 cut(s) 62, 345, 743
MspR9I CCNGG 4 cut(s) 62, 545, 744, 850
MvaI CCWGG 2 cut(s) 545, 850
MwoI GCNNNNNNNGC 2 cut(s) 251, 572
NciI CCSGG 2 cut(s) 62, 744
NdeII GATC 7 cut(s) 85, 116, 168, 427, 490, 823, 909
NlaIII CATG 5 cut(s) 130, 285, 303, 596, 818
NlaIV GGNNCC 1 cut(s) 469
NmuCI GTSAC 2 cut(s) 66, 340
NsiI ATGCAT 1 cut(s) 283
NspI RCATGY 3 cut(s) 285, 303, 596
NspV TTCGAA 1 cut(s) 884
PaeI GCATGC 1 cut(s) 596
PaqCI CACCTGC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 2 cut(s) 725, 757
PleI GAGTC 1 cut(s) 545
PpsI GAGTC 1 cut(s) 545
Psp6I CCWGG 2 cut(s) 543, 848
PspGI CCWGG 2 cut(s) 543, 848
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 1 cut(s) 716
PstI CTGCAG 1 cut(s) 113
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 2 cut(s) 189, 730
RsaNI GTAC 2 cut(s) 188, 729
SaqAI TTAA 2 cut(s) 72, 690
SatI GCNGC 2 cut(s) 724, 756
Sau3AI GATC 7 cut(s) 85, 116, 168, 427, 490, 823, 909
Sau96I GGNCC 1 cut(s) 716
SchI GAGTC 1 cut(s) 546
ScrFI CCNGG 4 cut(s) 62, 545, 744, 850
SduI GDGCHC 1 cut(s) 619
SexAI ACCWGGT 1 cut(s) 543
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 109
SfuI TTCGAA 1 cut(s) 884
SinI GGWCC 1 cut(s) 716
SmlI CTYRAG 3 cut(s) 42, 71, 587
SmoI CTYRAG 3 cut(s) 42, 71, 587
SphI GCATGC 1 cut(s) 596
Sse9I AATT 3 cut(s) 204, 520, 934
SsiI CCGC 2 cut(s) 367, 723
SspI AATATT 1 cut(s) 796
SspMI CTAG 4 cut(s) 83, 482, 621, 771
StyD4I CCNGG 4 cut(s) 60, 543, 742, 848
TaiI ACGT 1 cut(s) 342
TaqI TCGA 4 cut(s) 49, 248, 826, 884
TasI AATT 3 cut(s) 204, 520, 934
TatI WGTACW 2 cut(s) 187, 728
TauI GCSGC 1 cut(s) 726
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 2 cut(s) 72, 690
Tru9I TTAA 2 cut(s) 72, 690
TscAI CASTG 2 cut(s) 113, 516
TseFI GTSAC 2 cut(s) 66, 340
TseI GCWGC 1 cut(s) 755
Tsp45I GTSAC 2 cut(s) 66, 340
TspDTI ATGAA 2 cut(s) 143, 210
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 2 cut(s) 113, 516
Vha464I CTTAAG 1 cut(s) 71
VneI GTGCAC 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 1 cut(s) 934
XbaI TCTAGA 1 cut(s) 481
XceI RCATGY 3 cut(s) 285, 303, 596
XmiI GTMKAC 1 cut(s) 540
XspI CTAG 4 cut(s) 83, 482, 621, 771
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.