Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009870

Physical Location & Seq

Genomic Coordinates Forward (+)

12837353 .. 12840230

Gene Structure 2878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G24972.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAACCGACGGCGACTTTTGGTATCGGCGACACTGCTCTCGTATTTGCTCTACGGCATGGCTCTCGTCTCCGTTGAAGCCTCCGGTGGTGAAAAGCTTAGAGATAATCTGGATTTGACTAAAACGACGACGTCGTCACCGAGCATATCACATCGGAAAATGCTGCTTCTCTCTCCTGGTACTGGAAAAACAGAAAGGAGTGTAGAGCCGGAGAGAATTGGAGAAAAGTGCAAGAGTACGGACATAGTGGTGAACCAAGCAGTAACGGAACCAATGCCTAACGGAATACCAGGCTACATGGTAGAGATAACGAACCAGTGTATGTCTGGATGCATAATTTCGAGGATCCACATCAACTGCGGTTGGTTCAGCTCAGCTAAGTTGATAAACCCAAGAGTCTTCAAGCGTATTCACTACGACGACTGTCTCGTCAACAACGGCAAGCCTTTGCCTTTTGGCTCCACTCTCTCTTTTCACTACGCCAACACTTTCCCTTACCATCTCTCTGTCGCCTTCGTGACATGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0001709 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.46

Weight (kDa)

9.1

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	79 - 175	8.9e-38	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24972
fragaria_vesca	FvH4_5g08940 FvH4_5g08940
malus_domestica	MD06G1137000.v1.1 MD14G1151800.v1.1
prunus_persica	Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1
pyrus_communis	pycom06g12830
rosa_chinensis	RchiOBHm_Chr7g0189441
rosa_laevigata	RLG00000004611
rosa_roxburghii	Rroxscaffold_3G00265440
rosa_rugosa	Rorug06G0497800 Rorug06G0497900 Rorug06G0498000 Rorug06G0498000
rosa_samantha	Rh7AG102700 Rh7DG104800
rosa_wichuraiana	Rw7G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	133, 428
AatII	GACGTC	1 cut(s)	134
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	2 cut(s)	340, 353
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	2 cut(s)	181, 238
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	521
AgsI	TTSAA	2 cut(s)	77, 403
AjnI	CCWGG	2 cut(s)	175, 289
AluBI	AGCT	3 cut(s)	97, 372, 377
AluI	AGCT	3 cut(s)	97, 372, 377
Alw26I	GTCTC	2 cut(s)	73, 431
AlwI	GGATC	2 cut(s)	340, 353
ApeKI	GCWGC	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	101, 129, 262
BamHI	GGATCC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	1 cut(s)	507
BceAI	ACGGC	3 cut(s)	26, 70, 454
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	2 cut(s)	177, 291
BcoDI	GTCTC	2 cut(s)	73, 431
BisI	GCNGC	1 cut(s)	164
BlpI	GCTNAGC	1 cut(s)	373
BlsI	GCNGC	1 cut(s)	165
Bme1390I	CCNGG	2 cut(s)	177, 291
BmiI	GGNNCC	3 cut(s)	270, 347, 460
BmrFI	CCNGG	2 cut(s)	177, 291
BmsI	GCATC	1 cut(s)	320
BoxI	GACNNNNGTC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	391
Bpu1102I	GCTNAGC	1 cut(s)	373
BsaBI	GATNNNNATC	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	131
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	187, 316
Bse8I	GATNNNNATC	1 cut(s)	350
BseBI	CCWGG	2 cut(s)	177, 291
BseGI	GGATG	1 cut(s)	335
BseJI	GATNNNNATC	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	187, 316
BseXI	GCAGC	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	84, 209
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	2 cut(s)	73, 431
BsmBI	CGTCTC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	345
Bsp1720I	GCTNAGC	1 cut(s)	373
BspACI	CCGC	1 cut(s)	360
BspCNI	CTCAG	1 cut(s)	386
BspLI	GGNNCC	3 cut(s)	270, 347, 460
BspPI	GGATC	2 cut(s)	340, 353
BsrI	ACTGG	2 cut(s)	187, 316
BssMI	GATC	1 cut(s)	345
BssNI	GRCGYC	1 cut(s)	131
Bst2UI	CCWGG	2 cut(s)	177, 291
Bst4CI	ACNGT	1 cut(s)	425
BstACI	GRCGYC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	4 cut(s)	98, 373, 378, 528
BstF5I	GGATG	1 cut(s)	335
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	2 cut(s)	73, 431
BstMBI	GATC	1 cut(s)	345
BstNI	CCWGG	2 cut(s)	177, 291
BstNSI	RCATGY	1 cut(s)	525
BstPAI	GACNNNNGTC	1 cut(s)	423
BstSCI	CCNGG	2 cut(s)	175, 289
BstV1I	GCAGC	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	391
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	335
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	32, 323
Cac8I	GCNNGC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	180, 237
CviAII	CATG	3 cut(s)	58, 298, 522
CviJI	RGCY	9 cut(s)	62, 80, 97, 208, 294, 372, 377, 445, 459
CviKI_1	RGCY	9 cut(s)	62, 80, 97, 208, 294, 372, 377, 445, 459
CviQI	GTAC	2 cut(s)	180, 237
DdeI	CTNAG	4 cut(s)	98, 373, 378, 528
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
DrdI	GACNNNNNNGTC	2 cut(s)	133, 428
DseDI	GACNNNNNNGTC	2 cut(s)	133, 428
EcoRII	CCWGG	2 cut(s)	175, 289
EcoT22I	ATGCAT	1 cut(s)	335
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	3 cut(s)	61, 301, 525
FaiI	YATR	7 cut(s)	59, 146, 245, 299, 323, 335, 523
FatI	CATG	3 cut(s)	57, 297, 521
Fnu4HI	GCNGC	1 cut(s)	164
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	164
GluI	GCNGC	1 cut(s)	164
HapII	CCGG	2 cut(s)	84, 209
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	61, 301, 525
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	1 cut(s)	396
HpaII	CCGG	2 cut(s)	84, 209
HphI	GGTGA	3 cut(s)	101, 129, 262
Hpy166II	GTNNAC	2 cut(s)	253, 433
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	3 cut(s)	110, 327, 517
Hpy8I	GTNNAC	2 cut(s)	253, 433
Hpy99I	CGWCG	5 cut(s)	12, 130, 133, 136, 422
HpyAV	CCTTC	1 cut(s)	523
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	231, 333
HpyF3I	CTNAG	4 cut(s)	98, 373, 378, 528
HpySE526I	ACGT	1 cut(s)	131
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	3 cut(s)	61, 301, 525
Kzo9I	GATC	1 cut(s)	345
LmnI	GCTCC	1 cut(s)	464
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	1 cut(s)	320
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	3 cut(s)	135, 262, 517
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	1 cut(s)	391
MflI	RGATCY	1 cut(s)	345
MluCI	AATT	2 cut(s)	216, 336
MlyI	GAGTC	1 cut(s)	405
MnlI	CCTC	2 cut(s)	91, 336
Mph1103I	ATGCAT	1 cut(s)	335
MslI	CAYNNNNRTG	1 cut(s)	248
MspI	CCGG	2 cut(s)	84, 209
MspR9I	CCNGG	2 cut(s)	177, 291
MvaI	CCWGG	2 cut(s)	177, 291
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	3 cut(s)	61, 301, 525
NlaIV	GGNNCC	3 cut(s)	270, 347, 460
NmuCI	GTSAC	2 cut(s)	135, 517
NsiI	ATGCAT	1 cut(s)	335
NspI	RCATGY	1 cut(s)	525
PciI	ACATGT	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	3 cut(s)	131, 137, 426
PflFI	GACNNNGTC	2 cut(s)	130, 133
PkrI	GCNGC	1 cut(s)	165
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PscI	ACATGT	1 cut(s)	521
PshAI	GACNNNNGTC	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	175, 289
PspGI	CCWGG	2 cut(s)	175, 289
PspN4I	GGNNCC	3 cut(s)	270, 347, 460
PsuI	RGATCY	1 cut(s)	345
PsyI	GACNNNGTC	2 cut(s)	130, 133
RsaI	GTAC	2 cut(s)	181, 238
RsaNI	GTAC	2 cut(s)	180, 237
RseI	CAYNNNNRTG	1 cut(s)	248
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	345
SchI	GAGTC	1 cut(s)	405
ScrFI	CCNGG	2 cut(s)	177, 291
SetI	ASST	4 cut(s)	99, 134, 374, 379
SfaNI	GCATC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	216, 336
SsiI	CCGC	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	175, 289
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	341
TasI	AATT	2 cut(s)	216, 336
TscAI	CASTG	2 cut(s)	39, 323
TseFI	GTSAC	2 cut(s)	135, 517
TseI	GCWGC	1 cut(s)	163
Tsp45I	GTSAC	2 cut(s)	135, 517
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	4 cut(s)	61, 254, 281, 297
TspRI	CASTG	2 cut(s)	39, 323
Tth111I	GACNNNGTC	2 cut(s)	130, 133
XceI	RCATGY	1 cut(s)	525
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
ZraI	GACGTC	1 cut(s)	132
Zsp2I	ATGCAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.