Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009870

Physical Location & Seq

Genomic Coordinates Forward (+)

5168055 .. 5170812

Gene Structure 2758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCGAGCCGCGGCGGTCATCGGAACGGCGTCGTTGCTCTTCGTCGGAGCTATGGTGCTGCTGTACGTCACCTCCTCGCCTGGGTTTCTCAACGGCGGCCATGGTTTAATGGAGGTGAGCTTTTTGAGGTCCGGTACTACTCACCGGAAGCTTCTCGTTCGGGGAGAAGAAAATGTGGAGGAGCCAAATCGGATTTGGGGGGAGAAGTGCAGCCGGTCTGACATAGTGATCGACCAGGGTCCCACGGCACCGCTGCCTAGTGGCATTCCCACTTACACGGTGGAGATCATGAATGTATGTGGCACCGGCTGTAACATTAGCCGCATCCACCTCAACTGCGGTTGGTTCAGCTCCGCCACGCTGGTGAACCCGAGAGTGTTCAAGCGGCTTCGCTACAATGACTGCCTTGTGAATGACGGCAAGCCTCTGGTCAATGGTGGTTCAATCTCTTTTGAGTATGCCAACACCTTCCTCTACCCACTCAAGGTTTCCTCTGTTGTTTGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0001709 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.39

Weight (kDa)

8.57

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	72 - 168	1.4e-40	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24972
fragaria_vesca	FvH4_5g08940 FvH4_5g08940
malus_domestica	MD06G1137000.v1.1 MD14G1151800.v1.1
prunus_persica	Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1
pyrus_communis	pycom06g12830
rosa_chinensis	RchiOBHm_Chr7g0189441
rosa_laevigata	RLG00000004611
rosa_roxburghii	Rroxscaffold_3G00265440
rosa_rugosa	Rorug06G0497800 Rorug06G0497900 Rorug06G0498000 Rorug06G0498000
rosa_samantha	Rh7AG102700 Rh7DG104800
rosa_wichuraiana	Rw7G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	247, 302
AccII	CGCG	1 cut(s)	11
AciI	CCGC	9 cut(s)	9, 11, 14, 96, 251, 322, 339, 354, 385
AcoI	YGGCCR	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	2 cut(s)	65, 136
AfiI	CCNNNNNNNGG	2 cut(s)	81, 484
AgsI	TTSAA	2 cut(s)	382, 444
AjnI	CCWGG	2 cut(s)	79, 234
AleI	CACNNNNGTG	1 cut(s)	362
AluBI	AGCT	4 cut(s)	50, 120, 151, 351
AluI	AGCT	4 cut(s)	50, 120, 151, 351
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	3 cut(s)	58, 210, 253
AspS9I	GGNCC	2 cut(s)	129, 239
AsuHPI	GGTGA	4 cut(s)	61, 127, 134, 376
AvaI	CYCGRG	1 cut(s)	370
AvaII	GGWCC	2 cut(s)	129, 239
BanI	GGYRCC	2 cut(s)	247, 302
BbvI	GCAGC	3 cut(s)	45, 222, 240
BceAI	ACGGC	4 cut(s)	42, 109, 261, 433
BciT130I	CCWGG	2 cut(s)	81, 236
BfaI	CTAG	1 cut(s)	258
BisI	GCNGC	8 cut(s)	9, 12, 59, 97, 211, 254, 322, 386
BlsI	GCNGC	8 cut(s)	10, 13, 60, 98, 212, 255, 323, 387
Bme1390I	CCNGG	2 cut(s)	81, 236
Bme18I	GGWCC	2 cut(s)	129, 239
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	129, 239
BmiI	GGNNCC	5 cut(s)	183, 240, 241, 249, 304
BmrFI	CCNGG	2 cut(s)	81, 236
BmsI	GCATC	1 cut(s)	333
BoxI	GACNNNNGTC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	467
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	5 cut(s)	9, 80, 100, 235, 243
BsaWI	WCCGGW	2 cut(s)	131, 144
BsaXI	ACNNNNNCTCC	4 cut(s)	39, 56, 69, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 484
Bse118I	RCCGGY	2 cut(s)	213, 305
BseBI	CCWGG	2 cut(s)	81, 236
BseDI	CCNNGG	5 cut(s)	9, 80, 100, 235, 243
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	81, 484
BseRI	GAGGAG	2 cut(s)	64, 194
BseXI	GCAGC	3 cut(s)	45, 222, 240
BsgI	GTGCAG	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	99
BshNI	GGYRCC	2 cut(s)	247, 302
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	4 cut(s)	132, 145, 214, 306
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	2 cut(s)	81, 484
BsmFI	GGGAC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	228, 285
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	9 cut(s)	9, 11, 14, 96, 251, 322, 339, 354, 385
BspANI	GGCC	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	5 cut(s)	183, 240, 241, 249, 304
BspQI	GCTCTTC	1 cut(s)	44
BspT107I	GGYRCC	2 cut(s)	247, 302
BsrFI	RCCGGY	2 cut(s)	213, 305
BssAI	RCCGGY	2 cut(s)	213, 305
BssECI	CCNNGG	5 cut(s)	9, 80, 100, 235, 243
BssMI	GATC	2 cut(s)	228, 285
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	2 cut(s)	81, 236
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	6, 422
BstDSI	CCRYGG	3 cut(s)	9, 100, 243
BstF5I	GGATG	1 cut(s)	324
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	2 cut(s)	231, 288
BstMBI	GATC	2 cut(s)	228, 285
BstNI	CCWGG	2 cut(s)	81, 236
BstPAI	GACNNNNGTC	1 cut(s)	237
BstSCI	CCNGG	2 cut(s)	79, 234
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	45, 222, 240
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	3 cut(s)	9, 100, 243
BtsCI	GGATG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	6, 422
CciI	TCATGA	1 cut(s)	288
Cfr10I	RCCGGY	2 cut(s)	213, 305
Cfr13I	GGNCC	2 cut(s)	129, 239
Cfr42I	CCGCGG	1 cut(s)	12
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	64, 135
CviAII	CATG	2 cut(s)	101, 289
CviQI	GTAC	2 cut(s)	64, 135
DpnI	GATC	2 cut(s)	230, 287
DpnII	GATC	2 cut(s)	228, 285
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	100
Eco47I	GGWCC	2 cut(s)	129, 239
Eco88I	CYCGRG	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	79, 234
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	2 cut(s)	104, 292
FaiI	YATR	6 cut(s)	53, 102, 224, 290, 298, 459
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	2 cut(s)	100, 288
Fnu4HI	GCNGC	8 cut(s)	9, 12, 59, 97, 211, 254, 322, 386
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	8 cut(s)	9, 12, 59, 97, 211, 254, 322, 386
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	8 cut(s)	9, 12, 59, 97, 211, 254, 322, 386
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	4 cut(s)	132, 145, 214, 306
HgaI	GACGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	104, 292
HindIII	AAGCTT	1 cut(s)	149
HpaII	CCGG	4 cut(s)	132, 145, 214, 306
HphI	GGTGA	4 cut(s)	61, 127, 134, 376
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	4 cut(s)	23, 47, 192, 220
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	2 cut(s)	34, 47
HpyAV	CCTTC	1 cut(s)	478
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	104, 292
KflI	GGGWCCC	1 cut(s)	239
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	228, 285
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	3 cut(s)	47, 181, 356
Lsp1109I	GCAGC	3 cut(s)	45, 222, 240
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	67, 311
MalI	GATC	2 cut(s)	230, 287
MboI	GATC	2 cut(s)	228, 285
MboII	GAAGA	2 cut(s)	31, 179
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	9 cut(s)	82, 85, 106, 120, 172, 341, 435, 482, 502
MseI	TTAA	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	2 cut(s)	11, 253
MspI	CCGG	4 cut(s)	132, 145, 214, 306
MspR9I	CCNGG	2 cut(s)	81, 236
Mva1269I	GAATGC	1 cut(s)	264
MvaI	CCWGG	2 cut(s)	81, 236
MvnI	CGCG	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	2 cut(s)	228, 285
NlaIII	CATG	2 cut(s)	104, 292
NlaIV	GGNNCC	5 cut(s)	183, 240, 241, 249, 304
NmuCI	GTSAC	1 cut(s)	67
OliI	CACNNNNGTG	1 cut(s)	362
PagI	TCATGA	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	44
PctI	GAATGC	1 cut(s)	264
PkrI	GCNGC	8 cut(s)	10, 13, 60, 98, 212, 255, 323, 387
PpuMI	RGGWCCY	1 cut(s)	239
PshAI	GACNNNNGTC	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	79, 234
PspGI	CCWGG	2 cut(s)	79, 234
PspN4I	GGNNCC	5 cut(s)	183, 240, 241, 249, 304
PspPI	GGNCC	2 cut(s)	129, 239
PspPPI	RGGWCCY	1 cut(s)	239
RsaI	GTAC	2 cut(s)	65, 136
RsaNI	GTAC	2 cut(s)	64, 135
RseI	CAYNNNNRTG	1 cut(s)	362
SacII	CCGCGG	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	8 cut(s)	9, 12, 59, 97, 211, 254, 322, 386
Sau3AI	GATC	2 cut(s)	228, 285
Sau96I	GGNCC	2 cut(s)	129, 239
ScrFI	CCNGG	2 cut(s)	81, 236
SfaNI	GCATC	1 cut(s)	333
Sfr303I	CCGCGG	1 cut(s)	12
SgrBI	CCGCGG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	129, 239
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
SsiI	CCGC	9 cut(s)	9, 11, 14, 96, 251, 322, 339, 354, 385
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	79, 234
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	231
TauI	GCSGC	5 cut(s)	11, 14, 99, 324, 388
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	3 cut(s)	58, 210, 253
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	305
VpaK11BI	GGWCC	2 cut(s)	129, 239
XcmI	CCANNNNNNNNNTGG	2 cut(s)	192, 277
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.