Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009870

Physical Location & Seq

Genomic Coordinates Reverse (-)

28197213 .. 28197626

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1137000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATGGTCTCATTTTCTTTTCCTATATTAAATCGTATATATTCATATCATTTGCTTTCTTGTTTTACAGCGGCAGCAATGGAGGAACCAGACAGGATTCGAGGAGACAAGTGCAGCAAGGCAGACATAGTGATAAACCAGGGCCCCACACCCCCGCTGCCAAGTGGCATCCCCACATACACCGTCGAGATCATGAACATGTGCGTCACCGGCTGCGACATCTCCCACATCCACCTCACCTGCGGTTGGTTCAGCTCCGCCCGCCTCGTCAACCCCAAGATCTTCAAGCGCCTCCGCTACAACGACTGCCTCGTCAACGACGGCAAGCCCCTCGCCAACGGCGGCACGGTGTCGTTTCAGTACGCCAACACTTTCAGCTACAAGCTCTCCGTCTCCTCGGTCACGTGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0001709 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.16

Weight (kDa)

8.5

Isoelectric Point (pI)

28.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	39 - 137	2.4e-43	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24972
fragaria_vesca	FvH4_5g08940 FvH4_5g08940
malus_domestica	MD06G1137000.v1.1 MD14G1151800.v1.1
prunus_persica	Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1
pyrus_communis	pycom06g12830
rosa_chinensis	RchiOBHm_Chr7g0189441
rosa_laevigata	RLG00000004611
rosa_roxburghii	Rroxscaffold_3G00265440
rosa_rugosa	Rorug06G0497800 Rorug06G0497900 Rorug06G0498000 Rorug06G0498000
rosa_samantha	Rh7AG102700 Rh7DG104800
rosa_wichuraiana	Rw7G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	248
AasI	GACNNNNNNGTC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	248
AciI	CCGC	7 cut(s)	71, 155, 243, 258, 262, 295, 342
AcvI	CACGTG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	3 cut(s)	255, 378, 385
AluI	AGCT	3 cut(s)	255, 378, 385
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	3 cut(s)	13, 99, 397
AoxI	GGCC	1 cut(s)	142
ApaI	GGGCCC	1 cut(s)	146
ApeKI	GCWGC	4 cut(s)	74, 114, 157, 213
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	142, 143
AsuHPI	GGTGA	2 cut(s)	199, 229
BaeGI	GKGCMC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	146
BbrPI	CACGTG	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	4 cut(s)	86, 126, 144, 200
BceAI	ACGGC	2 cut(s)	337, 355
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	3 cut(s)	13, 99, 397
BfoI	RGCGCY	1 cut(s)	292
BfuAI	ACCTGC	1 cut(s)	248
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	6 cut(s)	72, 75, 115, 158, 214, 343
BlsI	GCNGC	6 cut(s)	73, 76, 116, 159, 215, 344
Bme1390I	CCNGG	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	142, 143
BmiI	GGNNCC	3 cut(s)	87, 144, 145
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	139, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse118I	RCCGGY	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	139, 396
BseGI	GGATG	2 cut(s)	168, 228
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	84
BseRI	GAGGAG	2 cut(s)	117, 385
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	4 cut(s)	86, 126, 144, 200
BsgI	GTGCAG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	3 cut(s)	13, 99, 397
BsmBI	CGTCTC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	144
Bso31I	GGTCTC	1 cut(s)	13
Bsp120I	GGGCCC	1 cut(s)	142
Bsp1286I	GDGCHC	2 cut(s)	146, 410
Bsp143I	GATC	2 cut(s)	189, 279
BspACI	CCGC	7 cut(s)	71, 155, 243, 258, 262, 295, 342
BspANI	GGCC	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	3 cut(s)	87, 144, 145
BspMI	ACCTGC	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	139, 396
BssMI	GATC	2 cut(s)	189, 279
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	184, 349
BstBAI	YACGTR	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	262, 326
BstDEI	CTNAG	1 cut(s)	411
BstF5I	GGATG	2 cut(s)	168, 228
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	2 cut(s)	192, 282
BstMAI	GTCTC	3 cut(s)	13, 99, 397
BstMBI	GATC	2 cut(s)	189, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 261
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	4 cut(s)	86, 126, 144, 200
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	168, 228
BveI	ACCTGC	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	262, 326
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	1 cut(s)	291
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	142, 143
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	193, 199
CviJI	RGCY	6 cut(s)	144, 213, 255, 328, 378, 385
CviKI_1	RGCY	6 cut(s)	144, 213, 255, 328, 378, 385
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	2 cut(s)	191, 281
DpnII	GATC	2 cut(s)	189, 279
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EciI	GGCGGA	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	13
Eco72I	CACGTG	1 cut(s)	405
EcoO109I	RGGNCCY	2 cut(s)	142, 143
EcoRII	CCWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	146
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	2 cut(s)	196, 202
FaiI	YATR	8 cut(s)	26, 38, 40, 46, 128, 178, 194, 200
FatI	CATG	2 cut(s)	192, 198
FauI	CCCGC	2 cut(s)	162, 269
Fnu4HI	GCNGC	6 cut(s)	72, 75, 115, 158, 214, 343
FokI	GGATG	2 cut(s)	155, 215
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	6 cut(s)	72, 75, 115, 158, 214, 343
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	6 cut(s)	72, 75, 115, 158, 214, 343
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	196, 202
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HincII	GTYRAC	2 cut(s)	271, 316
HindII	GTYRAC	2 cut(s)	271, 316
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	199, 229
Hpy166II	GTNNAC	2 cut(s)	271, 316
Hpy188III	TCNNGA	2 cut(s)	187, 193
Hpy8I	GTNNAC	2 cut(s)	271, 316
Hpy99I	CGWCG	2 cut(s)	188, 323
HpyCH4III	ACNGT	2 cut(s)	184, 349
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 261
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	2 cut(s)	196, 202
HspAI	GCGC	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	189, 279
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	6 cut(s)	79, 102, 125, 152, 223, 253
Lsp1109I	GCAGC	4 cut(s)	86, 126, 144, 200
LweI	GCATC	1 cut(s)	177
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	2 cut(s)	205, 400
MalI	GATC	2 cut(s)	191, 281
MboI	GATC	2 cut(s)	189, 279
MboII	GAAGA	1 cut(s)	274
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	2 cut(s)	146, 410
MnlI	CCTC	8 cut(s)	76, 95, 245, 275, 302, 320, 341, 406
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	2 cut(s)	71, 157
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	210, 261
NdeII	GATC	2 cut(s)	189, 279
NlaIII	CATG	2 cut(s)	196, 202
NlaIV	GGNNCC	3 cut(s)	87, 144, 145
NmuCI	GTSAC	2 cut(s)	205, 400
NspI	RCATGY	1 cut(s)	202
PagI	TCATGA	1 cut(s)	192
PaqCI	CACCTGC	1 cut(s)	248
PciI	ACATGT	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	6 cut(s)	73, 76, 116, 159, 215, 344
PmaCI	CACGTG	1 cut(s)	405
PmlI	CACGTG	1 cut(s)	405
Ppu21I	YACGTR	1 cut(s)	405
PscI	ACATGT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	138
PspCI	CACGTG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	3 cut(s)	87, 144, 145
PspOMI	GGGCCC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	142, 143
PsuI	RGATCY	1 cut(s)	279
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	6 cut(s)	72, 75, 115, 158, 214, 343
Sau3AI	GATC	2 cut(s)	189, 279
Sau96I	GGNCC	2 cut(s)	142, 143
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	146, 410
SetI	ASST	6 cut(s)	237, 242, 257, 380, 387, 407
SfaNI	GCATC	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	197
SsiI	CCGC	7 cut(s)	71, 155, 243, 258, 262, 295, 342
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	184, 349
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	2 cut(s)	100, 186
TaqII	GACCGA	1 cut(s)	388
TauI	GCSGC	2 cut(s)	74, 345
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TseFI	GTSAC	2 cut(s)	205, 400
TseI	GCWGC	4 cut(s)	74, 114, 157, 213
Tsp45I	GTSAC	2 cut(s)	205, 400
TspDTI	ATGAA	2 cut(s)	33, 209
TspGWI	ACGGA	1 cut(s)	379
XceI	RCATGY	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.