Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009870

Physical Location & Seq

Genomic Coordinates Reverse (-)

8017462 .. 8020486

Gene Structure 3025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG102700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGGCTTTCACTATCCCAATTTCATTACAAACTTAAAAGACCCTCTTTCTCTTTTTGCCTTTTCCTTTACATGATTCATGTGTACACAGGGCAAGAAAATGTGGAGGAACCGAATCGAATTTGGGGGGAGAAGTGTAGCCGGTCCGACATAGTGATTGAACAGGGTCCCACGGCACCGCTGCCGAGCGGCATTCCCACTTACACGGTGGAGATCATGAACGTGTGCGTCACCGGCTGTAACATTAGCCACATCCACCTCACCTGTGGTTGGTTCAGCTCCGCCACGCTGGTTAACCCGAAAGTCTTCAGGCGGCTACGCTATAATGACTGCCTTGTGAACGACGGCAAGCCTCTGGTCAATGGTGGTACAATCTCTTTTGAGTATGCCAACACCTTCCTCTACCCACTCAAGGTTTCCTCTGTAGCTTGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0001709 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.35

Weight (kDa)

8.16

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	48 - 144	1e-41	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24972
fragaria_vesca	FvH4_5g08940 FvH4_5g08940
malus_domestica	MD06G1137000.v1.1 MD14G1151800.v1.1
prunus_persica	Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1
pyrus_communis	pycom06g12830
rosa_chinensis	RchiOBHm_Chr7g0189441
rosa_laevigata	RLG00000004611
rosa_roxburghii	Rroxscaffold_3G00265440
rosa_rugosa	Rorug06G0497800 Rorug06G0497900 Rorug06G0498000 Rorug06G0498000
rosa_samantha	Rh7AG102700 Rh7DG104800
rosa_wichuraiana	Rw7G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccBSI	CCGCTC	1 cut(s)	189
AciI	CCGC	4 cut(s)	179, 189, 282, 313
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	292
AfaI	GTAC	2 cut(s)	86, 370
AfiI	CCNNNNNNNGG	2 cut(s)	270, 412
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	161
AluBI	AGCT	2 cut(s)	279, 428
AluI	AGCT	2 cut(s)	279, 428
ApeKI	GCWGC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	144, 167
AsuHPI	GGTGA	2 cut(s)	223, 253
AvaII	GGWCC	2 cut(s)	144, 167
BanI	GGYRCC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	168
BceAI	ACGGC	2 cut(s)	189, 361
BfmI	CTRYAG	1 cut(s)	423
BisI	GCNGC	3 cut(s)	182, 190, 314
BlsI	GCNGC	3 cut(s)	183, 191, 315
Bme18I	GGWCC	2 cut(s)	144, 167
BmgT120I	GGNCC	2 cut(s)	144, 167
BmiI	GGNNCC	4 cut(s)	111, 168, 169, 177
BpiI	GAAGAC	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 412
Bse118I	RCCGGY	2 cut(s)	141, 233
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	270, 412
BseXI	GCAGC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	142, 234
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	270, 412
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	4 cut(s)	179, 189, 282, 313
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	4 cut(s)	111, 168, 169, 177
BspT107I	GGYRCC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	189
BsrFI	RCCGGY	2 cut(s)	141, 233
BsrGI	TGTACA	1 cut(s)	84
BssAI	RCCGGY	2 cut(s)	141, 233
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	208
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	350, 430
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	252
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	298
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	350, 430
CciI	TCATGA	1 cut(s)	216
Cfr10I	RCCGGY	2 cut(s)	141, 233
Cfr13I	GGNCC	2 cut(s)	144, 167
CpoI	CGGWCCG	1 cut(s)	144
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	85, 369
CspI	CGGWCCG	1 cut(s)	144
CviAII	CATG	3 cut(s)	73, 80, 217
CviJI	RGCY	8 cut(s)	7, 141, 237, 249, 279, 316, 352, 428
CviKI_1	RGCY	8 cut(s)	7, 141, 237, 249, 279, 316, 352, 428
CviQI	GTAC	2 cut(s)	85, 369
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	144, 167
Eco57I	CTGAAG	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	167
FaeI	CATG	3 cut(s)	76, 83, 220
FaiI	YATR	6 cut(s)	74, 81, 152, 218, 324, 387
FalI	AAGNNNNNCTT	2 cut(s)	31, 63
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	3 cut(s)	72, 79, 216
Fnu4HI	GCNGC	3 cut(s)	182, 190, 314
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	182, 190, 314
GluI	GCNGC	3 cut(s)	182, 190, 314
HapII	CCGG	2 cut(s)	142, 234
HgaI	GACGC	1 cut(s)	217
Hin1II	CATG	3 cut(s)	76, 83, 220
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	76, 115
HpaI	GTTAAC	1 cut(s)	295
HpaII	CCGG	2 cut(s)	142, 234
HphI	GGTGA	2 cut(s)	223, 253
Hpy166II	GTNNAC	4 cut(s)	85, 87, 295, 340
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	4 cut(s)	85, 87, 295, 340
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	76, 83, 220
KflI	GGGWCCC	1 cut(s)	167
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	8 cut(s)	75, 149, 155, 247, 275, 277, 295, 341
Lsp1109I	GCAGC	1 cut(s)	168
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	229, 239
MalI	GATC	1 cut(s)	215
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	1 cut(s)	213
MboII	GAAGA	1 cut(s)	298
MluCI	AATT	2 cut(s)	20, 120
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	6 cut(s)	55, 100, 269, 363, 410, 430
MroXI	GAANNNNTTC	1 cut(s)	305
MseI	TTAA	2 cut(s)	36, 294
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	2 cut(s)	142, 234
Mva1269I	GAATGC	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	234
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	3 cut(s)	76, 83, 220
NlaIV	GGNNCC	4 cut(s)	111, 168, 169, 177
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	229
PagI	TCATGA	1 cut(s)	216
PctI	GAATGC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	2 cut(s)	76, 115
PkrI	GCNGC	3 cut(s)	183, 191, 315
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
PspN4I	GGNNCC	4 cut(s)	111, 168, 169, 177
PspPI	GGNCC	2 cut(s)	144, 167
PspPPI	RGGWCCY	1 cut(s)	167
RsaI	GTAC	2 cut(s)	86, 370
RsaNI	GTAC	2 cut(s)	85, 369
RseI	CAYNNNNRTG	1 cut(s)	221
Rsr2I	CGGWCCG	1 cut(s)	144
RsrII	CGGWCCG	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	36, 294
SatI	GCNGC	3 cut(s)	182, 190, 314
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	2 cut(s)	144, 167
SetI	ASST	7 cut(s)	225, 261, 266, 281, 398, 417, 430
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	2 cut(s)	144, 167
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	2 cut(s)	20, 120
SsiI	CCGC	4 cut(s)	179, 189, 282, 313
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	118
TasI	AATT	2 cut(s)	20, 120
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	2 cut(s)	192, 316
TfiI	GAWTC	2 cut(s)	76, 115
Tru1I	TTAA	2 cut(s)	36, 294
Tru9I	TTAA	2 cut(s)	36, 294
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	14, 68, 233
VpaK11BI	GGWCC	2 cut(s)	144, 167
XapI	RAATTY	1 cut(s)	120
XcmI	CCANNNNNNNNNTGG	2 cut(s)	205, 263
XmnI	GAANNNNTTC	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.