Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009870

Physical Location & Seq

Genomic Coordinates Reverse (-)

24513908 .. 24518090

Gene Structure 4183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1151800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACGAAACGGCCAGTCGTTGCGGTCGTGGCGTCGCTGCTTCTCTTCGGAGTCGTGGCTGCAGTCGTGCTGGTGCTCGCGCTTGGATTTGACGGAGCTGGAAATTTGAAGTCTGAATTGTCTGAAGCTGGGAACTCCACACTCACCGCAATCCATCGCAAGCTGCTTATTCGTGCGACAGCAATGGAGGAACCAAACAGGATTCGGGGAGACAAGTGCAGCAGGGCAGACGTAGTGATAAACCAGGGCCCCACATCCCCGCTGCCAAGTGGCATCCCCACATACACCGTCGAGATCATGAACACGTGCGCCACCGGCTGCGACATCTTCCACATCCACGTCGCCTGCGGCTGGTTCAGCTCCGCCCGCCTCGTCAACCCCAAGATCTTCAAGCGCCTCCGCTACAACGACTGCCTGGTCAACGACGGCAAGCCCCTTGTCAGCGGCGGTACGGTGTCGTTTCAGTACGCCAACACTTTCAGCTACAAGCTCTCGGTCTCCTCGGTCACGTGCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0001709 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.45

Weight (kDa)

9.3

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	75 - 171	1.3e-41	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24972
fragaria_vesca	FvH4_5g08940 FvH4_5g08940
malus_domestica	MD06G1137000.v1.1 MD14G1151800.v1.1
prunus_persica	Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1
pyrus_communis	pycom06g12830
rosa_chinensis	RchiOBHm_Chr7g0189441
rosa_laevigata	RLG00000004611
rosa_roxburghii	Rroxscaffold_3G00265440
rosa_rugosa	Rorug06G0497800 Rorug06G0497900 Rorug06G0498000 Rorug06G0498000
rosa_samantha	Rh7AG102700 Rh7DG104800
rosa_wichuraiana	Rw7G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	416
AccII	CGCG	1 cut(s)	80
AciI	CCGC	9 cut(s)	23, 147, 260, 348, 363, 367, 400, 444, 447
AcoI	YGGCCR	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	144
AcvI	CACGTG	2 cut(s)	306, 510
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	2 cut(s)	451, 467
AfiI	CCNNNNNNNGG	1 cut(s)	351
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	109, 391
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	243, 414
AluBI	AGCT	6 cut(s)	98, 128, 163, 360, 483, 490
AluI	AGCT	6 cut(s)	98, 128, 163, 360, 483, 490
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	204, 502
AoxI	GGCC	2 cut(s)	11, 247
ApaI	GGGCCC	1 cut(s)	251
ApeKI	GCWGC	6 cut(s)	37, 59, 163, 219, 262, 318
ApoI	RAATTY	1 cut(s)	103
AspLEI	GCGC	3 cut(s)	82, 311, 396
AspS9I	GGNCC	2 cut(s)	247, 248
AsuHPI	GGTGA	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	251
BbrPI	CACGTG	2 cut(s)	306, 510
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	6 cut(s)	24, 46, 150, 231, 249, 305
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	3 cut(s)	26, 442, 498
BciT130I	CCWGG	2 cut(s)	245, 416
BcoDI	GTCTC	2 cut(s)	204, 502
BfmI	CTRYAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	397
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	8 cut(s)	38, 60, 164, 220, 263, 319, 349, 445
BlsI	GCNGC	8 cut(s)	39, 61, 165, 221, 264, 320, 350, 446
Bme1390I	CCNGG	2 cut(s)	245, 416
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	2 cut(s)	247, 248
BmiI	GGNNCC	3 cut(s)	192, 249, 250
BmrFI	CCNGG	2 cut(s)	245, 416
BmsI	GCATC	1 cut(s)	282
BsaAI	YACGTR	2 cut(s)	306, 510
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	244, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	2 cut(s)	245, 416
BseDI	CCNNGG	2 cut(s)	244, 501
BseGI	GGATG	3 cut(s)	254, 273, 333
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMI	GCAATG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	490
BseSI	GKGCMC	1 cut(s)	251
BseXI	GCAGC	6 cut(s)	24, 46, 150, 231, 249, 305
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	80
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	13, 249
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	2 cut(s)	204, 502
BsnI	GGCC	2 cut(s)	13, 249
Bso31I	GGTCTC	1 cut(s)	502
Bsp120I	GGGCCC	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	78, 251
Bsp143I	GATC	2 cut(s)	294, 384
BspACI	CCGC	9 cut(s)	23, 147, 260, 348, 363, 367, 400, 444, 447
BspANI	GGCC	2 cut(s)	13, 249
BspFNI	CGCG	1 cut(s)	80
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	192, 249, 250
BspMAI	CTGCAG	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	244, 501
BssMI	GATC	2 cut(s)	294, 384
BssNI	GRCGYC	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	245, 416
Bst4CI	ACNGT	2 cut(s)	289, 454
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	32
BstBAI	YACGTR	2 cut(s)	306, 510
BstC8I	GCNNGC	5 cut(s)	78, 161, 346, 367, 431
BstF5I	GGATG	3 cut(s)	254, 273, 333
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	3 cut(s)	82, 311, 396
BstKTI	GATC	2 cut(s)	297, 387
BstMAI	GTCTC	2 cut(s)	204, 502
BstMBI	GATC	2 cut(s)	294, 384
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 315, 357, 366
BstNI	CCWGG	2 cut(s)	245, 416
BstSCI	CCNGG	2 cut(s)	243, 414
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	251
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	6 cut(s)	24, 46, 150, 231, 249, 305
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BsuRI	GGCC	2 cut(s)	13, 249
BtgZI	GCGATG	1 cut(s)	140
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	3 cut(s)	254, 273, 333
Cac8I	GCNNGC	5 cut(s)	78, 161, 346, 367, 431
CciI	TCATGA	1 cut(s)	297
CfoI	GCGC	3 cut(s)	82, 311, 396
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	247, 248
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	450, 466
CviAII	CATG	1 cut(s)	298
CviQI	GTAC	2 cut(s)	450, 466
DpnI	GATC	2 cut(s)	296, 386
DpnII	GATC	2 cut(s)	294, 384
DrdI	GACNNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	416
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	144
Eco72I	CACGTG	2 cut(s)	306, 510
EcoO109I	RGGNCCY	2 cut(s)	247, 248
EcoRII	CCWGG	2 cut(s)	243, 414
EcoT38I	GRGCYC	1 cut(s)	251
FaeI	CATG	1 cut(s)	301
FaiI	YATR	2 cut(s)	283, 299
FatI	CATG	1 cut(s)	297
FauI	CCCGC	2 cut(s)	267, 374
Fnu4HI	GCNGC	8 cut(s)	38, 60, 164, 220, 263, 319, 349, 445
FokI	GGATG	3 cut(s)	241, 260, 320
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	8 cut(s)	38, 60, 164, 220, 263, 319, 349, 445
GlaI	GCGC	3 cut(s)	81, 310, 395
GluI	GCNGC	8 cut(s)	38, 60, 164, 220, 263, 319, 349, 445
GsaI	CCCAGC	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	13, 249
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	21
HhaI	GCGC	3 cut(s)	82, 311, 396
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	3 cut(s)	80, 309, 394
HinP1I	GCGC	3 cut(s)	80, 309, 394
HincII	GTYRAC	2 cut(s)	376, 421
HindII	GTYRAC	2 cut(s)	376, 421
HinfI	GANTC	2 cut(s)	51, 202
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	376, 421
Hpy188I	TCNGA	3 cut(s)	50, 115, 124
Hpy188III	TCNNGA	2 cut(s)	292, 298
Hpy8I	GTNNAC	2 cut(s)	376, 421
Hpy99I	CGWCG	4 cut(s)	37, 293, 344, 428
HpyCH4III	ACNGT	2 cut(s)	289, 454
HpyCH4IV	ACGT	4 cut(s)	231, 305, 339, 509
HpyCH4V	TGCA	2 cut(s)	62, 219
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 315, 357, 366
HpySE526I	ACGT	4 cut(s)	231, 305, 339, 509
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	3 cut(s)	80, 309, 394
Kzo9I	GATC	2 cut(s)	294, 384
LmnI	GCTCC	2 cut(s)	95, 365
Lsp1109I	GCAGC	6 cut(s)	24, 46, 150, 231, 249, 305
LweI	GCATC	1 cut(s)	282
MaeII	ACGT	4 cut(s)	231, 305, 339, 509
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	2 cut(s)	296, 386
MboI	GATC	2 cut(s)	294, 384
MboII	GAAGA	3 cut(s)	37, 319, 379
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	2 cut(s)	78, 251
MluCI	AATT	2 cut(s)	103, 116
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	4 cut(s)	181, 380, 407, 511
MseI	TTAA	1 cut(s)	517
MspA1I	CMGCKG	2 cut(s)	262, 444
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	245, 416
MvaI	CCWGG	2 cut(s)	245, 416
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	4 cut(s)	29, 315, 357, 366
NdeII	GATC	2 cut(s)	294, 384
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	3 cut(s)	192, 249, 250
NmuCI	GTSAC	1 cut(s)	505
PagI	TCATGA	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	8 cut(s)	39, 61, 165, 221, 264, 320, 350, 446
PleI	GAGTC	1 cut(s)	59
PmaCI	CACGTG	2 cut(s)	306, 510
PmlI	CACGTG	2 cut(s)	306, 510
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	2 cut(s)	306, 510
Psp6I	CCWGG	2 cut(s)	243, 414
PspCI	CACGTG	2 cut(s)	306, 510
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	2 cut(s)	243, 414
PspN4I	GGNNCC	3 cut(s)	192, 249, 250
PspOMI	GGGCCC	1 cut(s)	247
PspPI	GGNCC	2 cut(s)	247, 248
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	384
RsaI	GTAC	2 cut(s)	451, 467
RsaNI	GTAC	2 cut(s)	450, 466
SaqAI	TTAA	1 cut(s)	517
SatI	GCNGC	8 cut(s)	38, 60, 164, 220, 263, 319, 349, 445
Sau3AI	GATC	2 cut(s)	294, 384
Sau96I	GGNCC	2 cut(s)	247, 248
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	245, 416
SduI	GDGCHC	2 cut(s)	78, 251
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	60
Sse9I	AATT	2 cut(s)	103, 116
SsiI	CCGC	9 cut(s)	23, 147, 260, 348, 363, 367, 400, 444, 447
StyD4I	CCNGG	2 cut(s)	243, 414
TaaI	ACNGT	2 cut(s)	289, 454
TaiI	ACGT	4 cut(s)	234, 308, 342, 512
TaqI	TCGA	1 cut(s)	291
TaqII	GACCGA	2 cut(s)	484, 493
TasI	AATT	2 cut(s)	103, 116
TauI	GCSGC	2 cut(s)	351, 447
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	517
Tru9I	TTAA	1 cut(s)	517
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	6 cut(s)	37, 59, 163, 219, 262, 318
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	108
XapI	RAATTY	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.