Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009870

Physical Location & Seq

Genomic Coordinates Forward (+)

60758759 .. 60767049

Gene Structure 8291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCGTGCCGCGGCGGTTATCGGAAAGGCGTCGTTGCTCTTCGTCGGAGTAGTGGCTGCGGCGGTGGTGTTGTTGTGCTCGCCTGGGTTTCTGAACGGTGGCCATGGTTTTATGGAGTCAAGGTTGTTGAGGTCTGGGGAAGGAAACAGCACGCTCGCCGCTGCTCACCGCAAGCTTCTTGTTCGGGGGCACGAAAATGTGGAGGAACCGAATCGAATCTGGGGGGAGAAGTGTAGCCGGTCCGACATAGTGATTGAACAGGGTCCCACGGCACCGCTGCCGAGCGGCATTCCCACTTACACGGTGGAGATCATGAACGTGTGCGTCACCGGCTGTAACATTAGCCACATCCACCTCACCTGCGGTTGGTTCAGCTCCGCCACGCTGGTTAGCCCGAAAGTCTTCAGGCGGCTTCGCTATAATGACTGCCTTGTGAACGACGGCAAGCCTCTGGTCAATGGTGGTACAATCTCTTTTGAGTATGCCAACACCTTCCTCTACCCACTCAAGGTTTCCTCTGTAGCTTGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0001709 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.04

Weight (kDa)

8.73

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	80 - 176	7e-41	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24972
fragaria_vesca	FvH4_5g08940 FvH4_5g08940
malus_domestica	MD06G1137000.v1.1 MD14G1151800.v1.1
prunus_persica	Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1
pyrus_communis	pycom06g12830
rosa_chinensis	RchiOBHm_Chr7g0189441
rosa_laevigata	RLG00000004611
rosa_roxburghii	Rroxscaffold_3G00265440
rosa_rugosa	Rorug06G0497800 Rorug06G0497900 Rorug06G0498000 Rorug06G0498000
rosa_samantha	Rh7AG102700 Rh7DG104800
rosa_wichuraiana	Rw7G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	368
Acc36I	ACCTGC	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	271
AccBSI	CCGCTC	1 cut(s)	285
AccII	CGCG	1 cut(s)	11
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	388
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	2 cut(s)	366, 508
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	3 cut(s)	175, 375, 524
AluI	AGCT	3 cut(s)	175, 375, 524
Alw21I	GWGCWC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	56, 161, 277
Asp700I	GAANNNNTTC	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	240, 263
AsuHPI	GGTGA	3 cut(s)	158, 319, 349
AvaII	GGWCC	2 cut(s)	240, 263
BaeGI	GKGCMC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	3 cut(s)	43, 148, 264
BceAI	ACGGC	2 cut(s)	285, 457
BciT130I	CCWGG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	368
BisI	GCNGC	9 cut(s)	9, 12, 57, 60, 159, 162, 278, 286, 410
BlsI	GCNGC	9 cut(s)	10, 13, 58, 61, 160, 163, 279, 287, 411
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	2 cut(s)	240, 263
BmgT120I	GGNCC	2 cut(s)	240, 263
BmiI	GGNNCC	4 cut(s)	207, 264, 265, 273
BmrFI	CCNGG	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	4 cut(s)	9, 83, 103, 267
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 508
Bse118I	RCCGGY	2 cut(s)	237, 329
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	4 cut(s)	9, 83, 103, 267
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	2 cut(s)	366, 508
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	43, 148, 264
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	238, 330
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	366, 508
BsmFI	GGGAC	1 cut(s)	249
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	80, 192
Bsp143I	GATC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	103
BspANI	GGCC	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	4 cut(s)	207, 264, 265, 273
BspMI	ACCTGC	1 cut(s)	368
BspQI	GCTCTTC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	271
BsrBI	CCGCTC	1 cut(s)	285
BsrFI	RCCGGY	2 cut(s)	237, 329
BssAI	RCCGGY	2 cut(s)	237, 329
BssECI	CCNNGG	4 cut(s)	9, 83, 103, 267
BssMI	GATC	1 cut(s)	309
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	98, 304
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	7 cut(s)	6, 80, 152, 156, 173, 446, 526
BstDSI	CCRYGG	3 cut(s)	9, 103, 267
BstF5I	GGATG	1 cut(s)	348
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	43, 148, 264
BstV2I	GAAGAC	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	3 cut(s)	9, 103, 267
BtsCI	GGATG	1 cut(s)	348
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	7 cut(s)	6, 80, 152, 156, 173, 446, 526
CciI	TCATGA	1 cut(s)	312
Cfr10I	RCCGGY	2 cut(s)	237, 329
Cfr13I	GGNCC	2 cut(s)	240, 263
Cfr42I	CCGCGG	1 cut(s)	12
CpoI	CGGWCCG	1 cut(s)	240
CseI	GACGC	2 cut(s)	18, 313
Csp6I	GTAC	1 cut(s)	465
CspI	CGGWCCG	1 cut(s)	240
CviAII	CATG	2 cut(s)	104, 313
CviQI	GTAC	1 cut(s)	465
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	240, 263
Eco57I	CTGAAG	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	2 cut(s)	107, 316
FaiI	YATR	6 cut(s)	105, 113, 248, 314, 420, 483
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	2 cut(s)	103, 312
Fnu4HI	GCNGC	9 cut(s)	9, 12, 57, 60, 159, 162, 278, 286, 410
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	9 cut(s)	9, 12, 57, 60, 159, 162, 278, 286, 410
GluI	GCNGC	9 cut(s)	9, 12, 57, 60, 159, 162, 278, 286, 410
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	238, 330
HgaI	GACGC	2 cut(s)	18, 313
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	107, 316
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	3 cut(s)	116, 211, 216
HpaII	CCGG	2 cut(s)	238, 330
HphI	GGTGA	3 cut(s)	158, 319, 349
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	4 cut(s)	23, 47, 93, 244
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	3 cut(s)	34, 47, 443
HpyAV	CCTTC	2 cut(s)	134, 502
HpyCH4III	ACNGT	2 cut(s)	98, 304
HpyCH4IV	ACGT	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	318
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	107, 316
KflI	GGGWCCC	1 cut(s)	263
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	309
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	3 cut(s)	43, 148, 264
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	325, 335
MalI	GATC	1 cut(s)	311
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	1 cut(s)	309
MboII	GAAGA	2 cut(s)	31, 394
MhlI	GDGCHC	2 cut(s)	80, 192
MlsI	TGGCCA	1 cut(s)	102
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	2 cut(s)	25, 267
MnlI	CCTC	6 cut(s)	123, 196, 365, 459, 506, 526
Mox20I	TGGCCA	1 cut(s)	102
MroXI	GAANNNNTTC	1 cut(s)	401
MscI	TGGCCA	1 cut(s)	102
MslI	CAYNNNNRTG	2 cut(s)	195, 317
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	3 cut(s)	11, 161, 277
MspI	CCGG	2 cut(s)	238, 330
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	2 cut(s)	107, 316
NlaIV	GGNNCC	4 cut(s)	207, 264, 265, 273
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	325
PagI	TCATGA	1 cut(s)	312
PaqCI	CACCTGC	1 cut(s)	368
PciSI	GCTCTTC	1 cut(s)	44
PctI	GAATGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	211, 216
PkrI	GCNGC	9 cut(s)	10, 13, 58, 61, 160, 163, 279, 287, 411
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	4 cut(s)	207, 264, 265, 273
PspPI	GGNCC	2 cut(s)	240, 263
PspPPI	RGGWCCY	1 cut(s)	263
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
RseI	CAYNNNNRTG	2 cut(s)	195, 317
Rsr2I	CGGWCCG	1 cut(s)	240
RsrII	CGGWCCG	1 cut(s)	240
SacII	CCGCGG	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	44
SatI	GCNGC	9 cut(s)	9, 12, 57, 60, 159, 162, 278, 286, 410
Sau3AI	GATC	1 cut(s)	309
Sau96I	GGNCC	2 cut(s)	240, 263
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	80, 192
SfcI	CTRYAG	1 cut(s)	519
Sfr303I	CCGCGG	1 cut(s)	12
SgrBI	CCGCGG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	240, 263
SmiMI	CAYNNNNRTG	2 cut(s)	195, 317
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	98, 304
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	214
TauI	GCSGC	6 cut(s)	11, 14, 62, 161, 288, 412
TfiI	GAWTC	2 cut(s)	211, 216
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	3 cut(s)	56, 161, 277
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	240, 263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.