Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009870

Physical Location & Seq

Genomic Coordinates Reverse (-)

8227658 .. 8230559

Gene Structure 2902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G008880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAATCAAGGTTGTTGAGGTCTGGGGATGGAAACAGCAAGCTCGCCGCTGCTCACCGCAAGCTTCTTGTTCGGGGGCAAGAAAATGTGGAGGAACCCAATCGAATTTGGGGGGAGAAGTGTAGCCGGTCCGACATAGTGATTGAACAGGGTCCCACGGCACCGCTGCCGAGCGGCATTCCCACTTACACGGTGGAGATCATGAACGTGTGCGTCACCGGCTGTAACATTAGCCACATCCACCTCACCTGTGGTTGGTTCAGCTCCGCCACGCTGGTTAACCCGAAAGTCTTCAGGCGGCTACGCTATAATGACTGCCTTGTGAACGACGGCAAGCCTCTGGTCAATGGTGGTACAATCTCTTTTGAGTATGCCAACACCTTCCTCTACCCACTCAAGGTTTCCTCTGTAGCTTGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0001709 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.47

Weight (kDa)

8.57

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	43 - 139	9e-42	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24972
fragaria_vesca	FvH4_5g08940 FvH4_5g08940
malus_domestica	MD06G1137000.v1.1 MD14G1151800.v1.1
prunus_persica	Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1
pyrus_communis	pycom06g12830
rosa_chinensis	RchiOBHm_Chr7g0189441
rosa_laevigata	RLG00000004611
rosa_roxburghii	Rroxscaffold_3G00265440
rosa_rugosa	Rorug06G0497800 Rorug06G0497900 Rorug06G0498000 Rorug06G0498000
rosa_samantha	Rh7AG102700 Rh7DG104800
rosa_wichuraiana	Rw7G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	174
AciI	CCGC	6 cut(s)	48, 58, 164, 174, 267, 298
AcsI	RAATTY	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	277
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	2 cut(s)	255, 397
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	4 cut(s)	43, 64, 264, 413
AluI	AGCT	4 cut(s)	43, 64, 264, 413
ApeKI	GCWGC	2 cut(s)	50, 166
ApoI	RAATTY	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	129, 152
AsuHPI	GGTGA	3 cut(s)	47, 208, 238
AvaII	GGWCC	2 cut(s)	129, 152
BanI	GGYRCC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	37, 153
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	2 cut(s)	174, 346
BfmI	CTRYAG	1 cut(s)	408
BisI	GCNGC	5 cut(s)	48, 51, 167, 175, 299
BlsI	GCNGC	5 cut(s)	49, 52, 168, 176, 300
Bme18I	GGWCC	2 cut(s)	129, 152
BmgT120I	GGNCC	2 cut(s)	129, 152
BmiI	GGNNCC	4 cut(s)	96, 153, 154, 162
BpiI	GAAGAC	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 397
Bse118I	RCCGGY	2 cut(s)	126, 218
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	2 cut(s)	34, 237
BseLI	CCNNNNNNNGG	2 cut(s)	255, 397
BseXI	GCAGC	2 cut(s)	37, 153
BshNI	GGYRCC	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	127, 219
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	255, 397
BsmFI	GGGAC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	198
BspACI	CCGC	6 cut(s)	48, 58, 164, 174, 267, 298
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	4 cut(s)	96, 153, 154, 162
BspT107I	GGYRCC	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	174
BsrFI	RCCGGY	2 cut(s)	126, 218
BssAI	RCCGGY	2 cut(s)	126, 218
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	193
BstC8I	GCNNGC	5 cut(s)	41, 45, 62, 335, 415
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	34, 237
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	2 cut(s)	37, 153
BstV2I	GAAGAC	1 cut(s)	283
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	34, 237
Cac8I	GCNNGC	5 cut(s)	41, 45, 62, 335, 415
CciI	TCATGA	1 cut(s)	201
Cfr10I	RCCGGY	2 cut(s)	126, 218
Cfr13I	GGNCC	2 cut(s)	129, 152
CpoI	CGGWCCG	1 cut(s)	129
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	354
CspI	CGGWCCG	1 cut(s)	129
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	9 cut(s)	43, 64, 126, 222, 234, 264, 301, 337, 413
CviKI_1	RGCY	9 cut(s)	43, 64, 126, 222, 234, 264, 301, 337, 413
CviQI	GTAC	1 cut(s)	354
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	129, 152
Eco57I	CTGAAG	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	152
FaeI	CATG	1 cut(s)	205
FaiI	YATR	4 cut(s)	137, 203, 309, 372
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	5 cut(s)	48, 51, 167, 175, 299
FokI	GGATG	2 cut(s)	41, 224
Fsp4HI	GCNGC	5 cut(s)	48, 51, 167, 175, 299
GluI	GCNGC	5 cut(s)	48, 51, 167, 175, 299
HapII	CCGG	2 cut(s)	127, 219
HgaI	GACGC	1 cut(s)	202
Hin1II	CATG	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	1 cut(s)	5
HpaI	GTTAAC	1 cut(s)	280
HpaII	CCGG	2 cut(s)	127, 219
HphI	GGTGA	3 cut(s)	47, 208, 238
Hpy166II	GTNNAC	2 cut(s)	280, 325
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	2 cut(s)	280, 325
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	205
KflI	GGGWCCC	1 cut(s)	152
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	8 cut(s)	9, 134, 140, 232, 260, 262, 280, 326
Lsp1109I	GCAGC	2 cut(s)	37, 153
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	214, 224
MalI	GATC	1 cut(s)	200
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	1 cut(s)	198
MboII	GAAGA	1 cut(s)	283
MluCI	AATT	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	6 cut(s)	12, 85, 254, 348, 395, 415
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	2 cut(s)	50, 166
MspI	CCGG	2 cut(s)	127, 219
Mva1269I	GAATGC	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	219
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	4 cut(s)	96, 153, 154, 162
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	214
PagI	TCATGA	1 cut(s)	201
PctI	GAATGC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	5 cut(s)	49, 52, 168, 176, 300
PpuMI	RGGWCCY	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	152
PspN4I	GGNNCC	4 cut(s)	96, 153, 154, 162
PspPI	GGNCC	2 cut(s)	129, 152
PspPPI	RGGWCCY	1 cut(s)	152
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
RseI	CAYNNNNRTG	1 cut(s)	206
Rsr2I	CGGWCCG	1 cut(s)	129
RsrII	CGGWCCG	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	5 cut(s)	48, 51, 167, 175, 299
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	2 cut(s)	129, 152
SfcI	CTRYAG	1 cut(s)	408
SinI	GGWCC	2 cut(s)	129, 152
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	6 cut(s)	48, 58, 164, 174, 267, 298
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	103
TasI	AATT	1 cut(s)	105
TauI	GCSGC	3 cut(s)	50, 177, 301
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	50, 166
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	218
VpaK11BI	GGWCC	2 cut(s)	129, 152
XapI	RAATTY	1 cut(s)	105
XcmI	CCANNNNNNNNNTGG	2 cut(s)	190, 248
XmnI	GAANNNNTTC	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.